Basic Information

Insect: Chymomyza costata
Gene Symbol: salm
Assembly: GCA_018150985.1
Location: JAECWU010000634.1:112948-119742[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.6 1.3e+02 3.4 0.1 10 23 362 375 360 375 0.91

2 8 2.9e-05 0.0023 18.3 3.5 1 23 381 403 381 403 0.98

3 8 2 1.6e+02 3.1 2.5 5 23 649 667 646 667 0.84

4 8 3e-08 2.4e-06 27.7 0.2 1 23 673 695 673 695 0.98

5 8 0.00092 0.073 13.6 0.9 1 23 705 727 705 727 0.98

6 8 0.046 3.7 8.3 0.1 2 23 921 943 921 943 0.96

7 8 9.9e-06 0.00079 19.8 5.0 1 23 1090 1112 1090 1112 0.96

8 8 7.9e-08 6.3e-06 26.4 0.7 1 23 1118 1140 1118 1140 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.6	1.3e+02	3.4	0.1	10	23	362	375	360	375	0.91
2	8	2.9e-05	0.0023	18.3	3.5	1	23	381	403	381	403	0.98
3	8	2	1.6e+02	3.1	2.5	5	23	649	667	646	667	0.84
4	8	3e-08	2.4e-06	27.7	0.2	1	23	673	695	673	695	0.98
5	8	0.00092	0.073	13.6	0.9	1	23	705	727	705	727	0.98
6	8	0.046	3.7	8.3	0.1	2	23	921	943	921	943	0.96
7	8	9.9e-06	0.00079	19.8	5.0	1	23	1090	1112	1090	1112	0.96
8	8	7.9e-08	6.3e-06	26.4	0.7	1	23	1118	1140	1118	1140	0.98

Sequence Information

Coding Sequence: ATGTGTTCAATCTTTCGAAATCGCATCAATTATCGAGGCACTCGAAGCAGCTCGAATGGTGCTGGTGGCACGGCTGCTGCTACGGATGCGACAGCCGGTTTGCTCGGTAAGGAGCTGGATGCGGACAGCAATAATAACGCTAGCGCAGCCGATGACTCTGAGGCCAGGCCTACGACCGAGGCGGATGCTGAAGAAGTCGGCGAGCGACTAAGCGAGCAGCATGCCTCACCGATTGATGCAGACGAAGATGAAGAGCCGGGTAACAGCAATGAGGCACTGGATTTGTCTGTGATCTCCGGCAGCAGATTGCCTACCAGCGGGCATGTGGCACTAGAAGCTTTACAACATACCAAAGTAGCAGTGGCGCAGTTTGCGGCCACTGCACTGGCCAATAGCCAGTACTATGGCGAGGGCGGAGCGGGCACTGCCAGCGAGCTGGCCATGGTGCAGTCGACGATCTTTAATGTACAGCGGCAGCATTTAATGCAGCTGCAACTTATACAGCACCTACAGAGTCAATTGAAGCGTGCGGGCGGCGTGGTGGCAGCTCTGAGCAGGCAAACCGACGAACAGCCCGCCGAACAGAACGAAGAAGAGCTCATGCCAGCGAGCCCAAACGCGGCGTTGCCACGCGAAGCAGCGCCATCGCCCGTGCAGTCGCCTGCACCAAGTCCAAGGCAGAATGGCGAGCTCGACAAGCCAACTACAGAACGAGAGGAGAATACAAAGACTGATAATTGCGTAGAATTGGGAAACGAAATGGAAGTGGATGTAGCTAGGAATGCGTGCAATAGTGTAGAAAATAAAGCGCCTGCCGTCAAGGATAGCGACTACCAGCCGTTGAGCCATTGCGATATAAGCTCGAGCCTGGCCTCCAGCATTATCACCAATCATGACCCGCCACCAGCACCCAATGAACCCAACTGTTTGGAGATGCTGCAACGTCGCACCGAGGAAGTGCTGGACTCGGCCTCACAGAGCCTACACGCCTCGCAAATGCAGGAGGAGTACGAGTATACAGCCAAAGATGCACAGGGGCGTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTTGGTAGCTATTCGGCGCTGCAGATACACCTGCGTTCACACACCGGCGAACGACCCTTTCACTGCAATGTTTGTGGCAGCAAGTTTACCACCAAGGGCAATTTGAAGGTGCACTATCAACGGCATACACAAATCTTTCCGCCTATGCTGCTGCCGCCTACGGCCAATGGTATTCCATCTGCTAGTGAACAGTACCCAGGCTTTCCAAACCCGAGCAATGGTACACCACTGACACCCATACGCCTGCCCTTTGTGCCACCGCCGCCGCCGCCAGCGTCAGCAGCAGCGGAACAACTGGCCAAGGATAAGCAGTGTACGAATGAGTTGACTGCAGTAATAGAGCCGGAACCTGAGGTTCGCGGACATGAAGACAACACCAAAGAGGTAGCCGAGCTGGCCGAAGATCTTAGTAAGCCAGCCAAAGCTGCCATTAGAGAAAGCTCGCCAGTAGAAAGAGTCAAGACACCCAAAACGTCGGAAACCACGCTGGACAAGCTAGAGAAGCGTCTGTGCTCGCCGGCGGCCAAACGTAATGGCAATGTGCGCAAGCGACATACAAGCAGCCATAGTCCATCTAGTGAGCCCAAGAAGACGCTAGTGCCCAGTCCAGCGACTGAGGAGCGCGAGCATGTGGAGCATATTGCACGACTGGTGCGGCGTTCTTCAGCAAGCCGTAGCTCGGGCTCTGCTTCAGCCAGCTTTGATAACTTGCCGGCTGAGTACTCGCTGGCACAAATGGAGCGCATTATAGACAAATCCTGGGAGGATCTCATTGAGATAGACAAAACCTCGGAAACTTCAAAGTTACAGCAGCTGGTGGACAACATAGAGAACAAGCTGACAGATCCAAATCAATGCATTTTTTGCCAAAAGGTCATGTCCTGTCGCAGCTCACTGCAAATGCACATACGCACGCATACGGGTGAGCGTCCTTTTCGCTGTAAGATATGCGGACGTGCGTTTGCTACCAAAGGCAATCTTAAGGCGCATATGAGCATACACAAGATCAAACCGCCCATGCGCAGCCAGTTCAAGTGCCCCGTATGTCATCAAAAGTTCTCCAATGGCATCATCCTGCAGCAGCACATACGCATACATACCATGGATGATGGTAGTGGGAGCCAGGCCGCGGCCATAGCTGAAGCTGGAGCACGTGCGGCGCAACACCTGGACATGAGCATAGAGGATCAGAACTCGAACAAGTCTTTGGGCACCTCGGATACTCTGGACTTTTCCACTATCTCAGATAACTCGGGACAGCGTTCGGAGTCTTCGCAGGGTGATTTCGATGAGTTCATGACTATGGACAGCACCGACGACTCGCGTGACAACTCCAGCGCAGCTACTGCCACGCCACTGGACAAACGTGTGCCACATGACTACGATGACAAATCCGAGCTAGACTGTGGCCGTGAAAGTAGCGAACCAGCCATGGACCTCTCGGCGCCAACACGCCTGTTTGGCGTTAATGGCAATGCTGGTGGAACCGTCGGCGTCGGCGCTGCATTGCCCAAACAGCTGGAGCGTCTGCCCATGCTGGGCATGCCCATGCCGCCCAACTTCCTGCTAATGGCTGCGGCACGCGAAGAAATGCAAGCGTTGGGCCAGGCACATGCCAAGTTTCCACTGCTGCCGTTCGGTCCGCTGAGCTTTATGGGTCTACATCCGCCTCCAAATGTGTGCAATTTATGCTTTAAGATGCTGCCCAGCCTCGCAGCCTTGGAAAGTCATCTGCAGAGCGAACATGCGAAAGATGCTGCGGTTGGCAACCCTAGGAACCCAATTAATGATGCCGCCGCACCCTATGGCGCTAAGCTAACACTCAATCCCAATTTATTTGCCAAGAAGCCATCAGCTGAAAAGACGTCGGAGCATTATGCCTGTTCGTTGGAACAGAAACCGCGTGAGCAGAGTCCTGCTCCTCAACCAGCGCATATCAAAGAAGAGCCGGATTTTGAAGGCTTATCCGCGGAAGCTCAGACGCAGCCTGGCGCCGAGGAAGCTGGCTCGGAGAGTGGTGCAAGCTACTCACAGACTGCTCAGGAGGCTACCGATGCGGAACAGGCACTCATGAAGATGCAGCTGCATGCCCATCGTTTTCCCGCTAGTCCGCTGGACTTTCAGCAGGCGTTGATGTCGGCGGGACCGCCTAGCTCTAGTTTGGACCCACCCGTAAACAACAAGCACTTTTGTCATGTCTGTCGACGTAACTTTAGCTCCAGCTCGGCTCTACAGATACACATGCGCACTCATACGGGAGACAAGCCATTTCAGTGCAATGTCTGCCAGAAAGCCTTTACCACCAAAGGAAATCTGAAGGTACACATGGGCACGCATATGTGGACGAATCCCACTTCGCGACGCGGTAGACGCATGTCCTTGGAGCTGCCCATGCATAGCAGACCAGGTCCAGGGCTACCCACAGCTGAGCAAGAGTTTATGCAGCGCAGACCTGAACTGTTCTTTCCATATTTGCCGCCTTTCTTCAATGGACTGCCGCCCAAGCCCGGCGAGCTCAGTCCCGGCGCCTTTGCCAGCCTGCCTGCGCCACATTTTCCCAATGGCGCTAATGCCAAGTATCCGCCGGGTCTGTTAGGCTTTCCCAACTTTTTGGGCGCACAGCAGCAGTACAGTCTGGGGCATATGCCGCCATTGGAGCGGCGCAGTAGCAGCAAGTCTCCAACGCCACCTGCGCTCACGAAACAGCGTACAGTCACGCCTGAGCCTGCTATGCCTAGTCCGGCACGGGAGGATGCAAGTGCGCCCATTTGGCATCCCTTGAGCCGTGCCATCAAGACGGAAAACTATCAGCTGCAGGAAGTCAATGAACATGACGAACAATCCGTCGAGTTGGAGGAGGAGGATGAGGAAGAGAGCGGTACAGCCAAGTAG
Protein Sequence: MCSIFRNRINYRGTRSSSNGAGGTAAATDATAGLLGKELDADSNNNASAADDSEARPTTEADAEEVGERLSEQHASPIDADEDEEPGNSNEALDLSVISGSRLPTSGHVALEALQHTKVAVAQFAATALANSQYYGEGGAGTASELAMVQSTIFNVQRQHLMQLQLIQHLQSQLKRAGGVVAALSRQTDEQPAEQNEEELMPASPNAALPREAAPSPVQSPAPSPRQNGELDKPTTEREENTKTDNCVELGNEMEVDVARNACNSVENKAPAVKDSDYQPLSHCDISSSLASSIITNHDPPPAPNEPNCLEMLQRRTEEVLDSASQSLHASQMQEEYEYTAKDAQGRNXXXXXXXXXXXXXFGSYSALQIHLRSHTGERPFHCNVCGSKFTTKGNLKVHYQRHTQIFPPMLLPPTANGIPSASEQYPGFPNPSNGTPLTPIRLPFVPPPPPPASAAAEQLAKDKQCTNELTAVIEPEPEVRGHEDNTKEVAELAEDLSKPAKAAIRESSPVERVKTPKTSETTLDKLEKRLCSPAAKRNGNVRKRHTSSHSPSSEPKKTLVPSPATEEREHVEHIARLVRRSSASRSSGSASASFDNLPAEYSLAQMERIIDKSWEDLIEIDKTSETSKLQQLVDNIENKLTDPNQCIFCQKVMSCRSSLQMHIRTHTGERPFRCKICGRAFATKGNLKAHMSIHKIKPPMRSQFKCPVCHQKFSNGIILQQHIRIHTMDDGSGSQAAAIAEAGARAAQHLDMSIEDQNSNKSLGTSDTLDFSTISDNSGQRSESSQGDFDEFMTMDSTDDSRDNSSAATATPLDKRVPHDYDDKSELDCGRESSEPAMDLSAPTRLFGVNGNAGGTVGVGAALPKQLERLPMLGMPMPPNFLLMAAAREEMQALGQAHAKFPLLPFGPLSFMGLHPPPNVCNLCFKMLPSLAALESHLQSEHAKDAAVGNPRNPINDAAAPYGAKLTLNPNLFAKKPSAEKTSEHYACSLEQKPREQSPAPQPAHIKEEPDFEGLSAEAQTQPGAEEAGSESGASYSQTAQEATDAEQALMKMQLHAHRFPASPLDFQQALMSAGPPSSSLDPPVNNKHFCHVCRRNFSSSSALQIHMRTHTGDKPFQCNVCQKAFTTKGNLKVHMGTHMWTNPTSRRGRRMSLELPMHSRPGPGLPTAEQEFMQRRPELFFPYLPPFFNGLPPKPGELSPGAFASLPAPHFPNGANAKYPPGLLGFPNFLGAQQQYSLGHMPPLERRSSSKSPTPPALTKQRTVTPEPAMPSPAREDASAPIWHPLSRAIKTENYQLQEVNEHDEQSVELEEEDEEESGTAK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00339342; iTF_00338586; iTF_00336155; iTF_00336968;
90% Identity: iTF_00338586;
80% Identity: -