Basic Information

Insect: Chymomyza costata
Gene Symbol: Kr-h1
Assembly: GCA_018150985.1
Location: JAECWU010000003.1:4765087-4768518[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.004 0.32 11.6 3.1 1 23 206 228 206 228 0.98

2 8 1.6e-06 0.00013 22.3 0.5 1 23 283 305 283 305 0.99

3 8 2e-05 0.0016 18.9 2.3 1 23 311 333 311 333 0.98

4 8 4.3e-07 3.4e-05 24.1 2.8 1 23 339 361 339 361 0.99

5 8 3.1e-07 2.5e-05 24.5 1.3 1 23 367 389 367 389 0.98

6 8 0.00013 0.01 16.3 1.5 1 23 395 419 395 419 0.99

7 8 0.56 45 4.9 3.7 1 23 425 447 425 447 0.94

8 8 1.2e-06 9.2e-05 22.7 0.5 1 23 453 475 453 475 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.004	0.32	11.6	3.1	1	23	206	228	206	228	0.98
2	8	1.6e-06	0.00013	22.3	0.5	1	23	283	305	283	305	0.99
3	8	2e-05	0.0016	18.9	2.3	1	23	311	333	311	333	0.98
4	8	4.3e-07	3.4e-05	24.1	2.8	1	23	339	361	339	361	0.99
5	8	3.1e-07	2.5e-05	24.5	1.3	1	23	367	389	367	389	0.98
6	8	0.00013	0.01	16.3	1.5	1	23	395	419	395	419	0.99
7	8	0.56	45	4.9	3.7	1	23	425	447	425	447	0.94
8	8	1.2e-06	9.2e-05	22.7	0.5	1	23	453	475	453	475	0.98

Sequence Information

Coding Sequence: ATGACTGAACGTGAGAATGATTCAAAAAATTGGACAACCAAACAGAATTGGTTTAAGGAAGTGCTCTCGAAATCGGGCACCGAATTGGTCGATATCTCGAAAAGTAAACCAAAATTGTCAAATAACAAGTATCAAGCGAAAAAGGCAAATGAAAAAGGTTCATCTACTATCAATATGGTCTACTATCCCGCTAATCAGCTGCTCATAAAGACAGAGCAATCTAGTCAGGTGCAATTCTGCACCCCGTTGCAAGCGACACTGGCCGCTGCAAGCAGCAGCACAACGCCACCTTCTGGCCAGCATGAGCATTACGAATTATTGCAAACGCCACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCAACTACCAACAGCAACTCACATTTCAGCAACAAAATAGTATTACAAGCTCCGTAACTGCAGCACAACGCATCAAAGCTGAGCTTCCTTACCACTCCTCCAACACTGCTGCAACCAGCTACCAAGTCAAATCAAGCGCACCTTCTGCAACTATTAAAACTCCAACAACGACTGCGCTGCGAAAGCCCAATCCCAACAAACCTCAGTTTAAGTGCGACCAGTGCGGCATGACCTTTGGTAGCAAGTCAGCTCATACCTCACACACCAAGTCACATGCAAAAAACTCCGAGTTGGGGCTCAGCAACTCAGGAGGTGGGCCATCAGCATTGGATTACATTGCACCGACCATCGAGCTTAACGAAGCTGGACTACCGCTTGGCATACCAAAGAGCCCCACTATTAAGCCGCTGACAAATGTTGCGGCTGGTGCAGATCCCTATCAATGTAACGTGTGTCAGAAGACCTTTGCGGTTCCCGCACGCCTGATACGCCACTACAGAACGCACACAGGCGAACGGCCCTTCGAGTGCGAGTTTTGTCACAAACTATTCAGCGTTAAGGAGAATCTTCAGGTACATCGTCGCATTCATACAAAAGAACGGCCGTACAAGTGTGATGTTTGTGGTCGTGCATTTGAACACTCCGGCAAGCTGCACCGCCATATGCGCATACATACGGGTGAACGACCACACAAGTGTTCCGTCTGTGAAAAGACGTTTATCCAGTCCGGTCAACTGGTCATCCACATGCGCACCCACACCGGCGAAAAGCCCTACAAATGTCCTGTGGAAGGCTGCGGCAAGGGATTTACATGCTCCAAGCAGCTTAAAGTTCATTCGCGCACGCACACTGGTGAAAAGCCCTATCACTGCGACATATGTTTCCGAGATTTTGGCTACAATCATGTACTAAAATTACATCGCGTTCAGCATTACGGGGCCAAGTGTTATAAGTGCACTATATGCGACGAAACGTTCAAGAGCAAGAAGGAAATGGAAGCACATATAAAGGGCCATGCGAATGAGTTGCCAGATGACGAAGCTGAGAGTACAGTAGCACCTGAAGAAAAAGTAGCACAGCCCACGACACCGGAAAGTAGCAACCACTCACCGCCCAGTTCACCTCCAGAAGTCAGCACTAGTAGTTCCTCTATTTCGGCGGCACGTTCAAAAAAAGTGCGACAGTCACGCAATATCAAATTAGCTGCATCCGCATCTGCAGTGCAGCCGGCTTCGCCCGGCTCACCTCGTTCCACCTACTCACCGTCACACAGCTTGGCTTCTCATCCCTCTTTGGGATCACCTAGTAGCGGCTCAACGATAAGTTCACCGCCACCGGTCAACCCACAGTATGTACCGCACCAGACAGACGTGGATCCACATAGTTGTGACAGCGGCGTATCCAGTGCACAGCCTGCTGCAAGCTACGCCGACGAAGACTTGCCAACAGACCTAAGCATGCAGCAACATCAACCGGTTTACTACCAGGCTCCTAATTCCAGGGGTTGCAGCTCATTCACATCCGAACCTAAAACCAATTTCGTGGATCTGCACCCGCAGCAACCAGCAAGTACTTTAACCATTAATCCTGCGCTGCTTGAGGCGGCCAATATGGCACGACGCAATCACGATAATGATGACGATGATGTTCAGACGGCCGCCTGGCAGATGATGCAACTTCGTCGCGGACACGCTGCTATTCCATCCCTATCGGCTTCGACGTCCACGCCCACTTCCTCGGATATCGCACAGCCCGCACTACATGTCAGTGATTTAGCTGCCAACTATGATGACACACACGAGGCTAATGTGCTCATAGAGCATTTTAAGCGCGGCGATCTGGCACGTCATGGACTGCATCAAGGCTTTGCTCCAGTGCCCAAGTTTCAATCTTCCCTTGTAAATTCTGATATAGTTCGACGCGTTGAGGCGGCTATTGGACTACGCTCCAGCACGGAATCCCCAGAACGTTCTTCCTCGCCAGAAAGCGACTCATTAGTTATGGCCAACCGCAATGTCATGACTCTTCCACTGCGCAAAAGAAAGCATTACATGAATGAAAGTGATGCCAAAAAGAGTGAAACGACCTGTGAACCTGTGGCTGCTGTTGCTCCAGCAGGCGAAAGCTCAGATGCGACTGGACCGACGACCGGATCAAAAGTGATGCGTATGAGCTCGGTGATACAATTTGCCAAAGCCTCATAG
Protein Sequence: MTERENDSKNWTTKQNWFKEVLSKSGTELVDISKSKPKLSNNKYQAKKANEKGSSTINMVYYPANQLLIKTEQSSQVQFCTPLQATLAAASSSTTPPSGQHEHYELLQTPXXXXXXXXXXXXXXXXXXXXXXXXXXANYQQQLTFQQQNSITSSVTAAQRIKAELPYHSSNTAATSYQVKSSAPSATIKTPTTTALRKPNPNKPQFKCDQCGMTFGSKSAHTSHTKSHAKNSELGLSNSGGGPSALDYIAPTIELNEAGLPLGIPKSPTIKPLTNVAAGADPYQCNVCQKTFAVPARLIRHYRTHTGERPFECEFCHKLFSVKENLQVHRRIHTKERPYKCDVCGRAFEHSGKLHRHMRIHTGERPHKCSVCEKTFIQSGQLVIHMRTHTGEKPYKCPVEGCGKGFTCSKQLKVHSRTHTGEKPYHCDICFRDFGYNHVLKLHRVQHYGAKCYKCTICDETFKSKKEMEAHIKGHANELPDDEAESTVAPEEKVAQPTTPESSNHSPPSSPPEVSTSSSSISAARSKKVRQSRNIKLAASASAVQPASPGSPRSTYSPSHSLASHPSLGSPSSGSTISSPPPVNPQYVPHQTDVDPHSCDSGVSSAQPAASYADEDLPTDLSMQQHQPVYYQAPNSRGCSSFTSEPKTNFVDLHPQQPASTLTINPALLEAANMARRNHDNDDDDVQTAAWQMMQLRRGHAAIPSLSASTSTPTSSDIAQPALHVSDLAANYDDTHEANVLIEHFKRGDLARHGLHQGFAPVPKFQSSLVNSDIVRRVEAAIGLRSSTESPERSSSPESDSLVMANRNVMTLPLRKRKHYMNESDAKKSETTCEPVAAVAPAGESSDATGPTTGSKVMRMSSVIQFAKAS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00338583;
90% Identity: iTF_00338583;
80% Identity: -