Ccos007560.1
Basic Information
- Insect
- Chymomyza costata
- Gene Symbol
- -
- Assembly
- GCA_018150985.1
- Location
- JAECWU010000002.1:8827048-8830004[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00073 0.058 13.9 2.1 1 23 220 243 220 243 0.96 2 13 0.067 5.3 7.8 0.3 2 23 272 293 271 293 0.93 3 13 0.00018 0.014 15.9 0.8 1 23 382 405 382 405 0.97 4 13 0.035 2.8 8.6 1.2 1 19 412 430 412 433 0.91 5 13 8e-06 0.00064 20.1 1.2 1 23 471 494 471 494 0.98 6 13 5.6e-05 0.0045 17.4 1.4 2 23 501 522 500 522 0.96 7 13 0.025 2 9.1 0.1 2 21 549 568 548 569 0.94 8 13 1.7 1.4e+02 3.3 0.3 1 20 619 638 619 639 0.94 9 13 0.0077 0.61 10.7 1.7 1 23 679 702 679 702 0.96 10 13 0.0024 0.19 12.3 1.7 2 23 734 756 733 756 0.95 11 13 0.00035 0.028 14.9 0.1 1 23 767 789 767 789 0.96 12 13 0.0015 0.12 12.9 2.6 1 23 795 817 795 817 0.99 13 13 4.2e-07 3.4e-05 24.1 1.9 1 23 823 845 823 845 0.98
Sequence Information
- Coding Sequence
- ATGAAGCTCCCAATAATTTGCCGCACTTGCGATGCAAGGGATAGCGACAATTTATACAAACTCACTACGCCCACAAAAAAGTATCCCGAAAAAATGCTTTCAGATCTGTTGACGGAATTAACCGAAATAGATCTCAATGGATCCTATGCACAAGAACTGCCGCAATCCCTATGTAGCAGTTGCACAATGAAATTAATTAGTGCATATTACTTTGTTAGGCAAGTTCGTGATGCCAACGAAGTATTAATGAACCATTTAGAAAATAGTCAGATAAATTCTCATCCTACTTGCTTGCAAGAGCTGCCAATGGAGTTATGTGCGGAACAGCACGTGGAAGTAAAAATGGAAACTAAAGATGATGAAGTAAATGGTGATATTACCTGCACAGAGCTGCCAGAGTTGGCATTATTTCAACAGGCGGAAAATGTTGATATACTTGATGAAATTGAGGCAGATAGTCCAAAGCCAATAGATGACTTACTAGTTTCACCGGATGTCCTGAAGCAAGAGCAGGATACGGATACGTCCTCTATAGGCTTAGATCTAACAGATATCCCTAGCCAAGATTATGAAAACGATGATTCGCTCGATGATTTGCCATTAAAACAACTCGCTCGCAAATGGAAGCTAAAGAAAAAACCGGGTGCTAAAAAAAAATATAATTGTTATGAATGTTCTGAAAGTTTTACCAACGCGAATTTTTTAAAACAGCATTACTCACGCACTCACAAAACAAAATCGACTCTCAATGAGCAGCAAAAGGCCAAGACCATAGATTTAAATCTTTGCAGGCCACATGGGTATAAGTGTATTGAATGCATGATTTGTCAAAACAAATTCGGTAAAATATCAGAATTACGACGCCATTTCGAGGAGCATGCTACCACAATTGATTCTGAAGAGCAGCTTAATCTCAAGTTTAATGAGCTTGCGGAACTTTTGTATCCTGATTCAAACAACTTGACAGAGGAGAATTTGAAAAGTCTTATACGAAAGGAGCTGTCAGCTGGTGCATACGATCAATTTTATTCCATAACTAATGAATTTGGTTACGAAATGAATTTAGACAGCTCGGAAACAGAAAGCGAAGATGAACTGGGGGCAGAACTTGAAACGAAACAGGAAAGCAAAAGAGAAGCAAAGTATACGTGCGAGCTGTGCCAGCTAGGATACCCACGAAAATATCAGCTATTTGAACATCAACGTCTATCACACACTTGGTCCGAGGCGCCACATGTGTGCAGTCGCTGTGATGCCCGTTTTGTAAGCTTCGAACTGCTGAAACATCACAACGAAACCCAGTGTAAGAATTCGCAAAAGCGCTTTCTATGTCGGAAATGTCCAATGAGATTTCGCTGGAGGCATAATCGTCTAGCGCACTCCCGCGATCATCACACTGCTGACCAAACTTTCGAGTGCAACAAATGCAATCAAGTTTTTGACAAGAAAAGGTCGCTCTCCGTTCACTTGCGTACTATCCATGATAACAAACCCGTTATTCCTTGCCAATGGTGTAACCGCAAGTTTTTTCGTAATGACTACTTGCTCAAGCATCTGAAGCGCCACGGGATCAATGAGCAGGACATACCATTGGCTGAAACGCTTATTGCGGCAACAACAAAACCTAATGGTCTGAAGAAGATTACATGTAAGGTTTGCAACCTACAATTTCAGCGCATCGCAGATTTGCGTGGACATATGCAGCTGGAACTTAAGTTGTCGCTTTCGCAACATAAAAATTACGAATCATTAGAGAATTACTCCATAACAAATTATTCTGGTTTTGAGCTGCACCTCGATGATTCGGAAACGGAAGATGAATGCACTGCAATGCCCTACAAATCTCAGTCGGTTTATATTTGTGAGCTATGCCAGGTACAAGGTCGACGCAAATATGAAATAATGCAACATCAACATTGCATGCATCGCTTTGACACAATGCCATACAATTGCGACCGTTGCATATTCAAAACTGTTTCTAAGAACATAATGGACCATCACAAGCGTGTGCAATGTCTAAGTGAGCAAAAGAAACATATATGCAAAAAGTGTAGTTTTAAATTTATGTGGCCAGAAAACCTGGAGAAACATATGCAAATCCAACATGCTGGCTGTGAACAAGAAACGCTGGAAAACATCACACAAAAAGCTGACTCTGAAATGAAAAGCGAAGCTTCTGAAATTGGAGTACAATTACTTCAATGTCCGCACTGCGATAGAACCTATAAACTAATGAAGCGCCTGAATTATCACATACGAGATGTGCACACCAACCAAAAGCGTAAAGCCATGAAGAATTATTTATGTTCACTATGCGGCAGAGGAACGCAGTCCGCGGCGAGCTTAGCCACCCATATGCGACGGCACACGGGCGAGAAACCTTTTAAATGTGATTTGTGCGAAATGGCCTTTCATAACAATTCGGAAATGGTGTACCATAGACGCAAGCATACTGGTGAAAAACCATATCATTGCTCAATTTGTGGAAAAAATTTTGCTCGCTCGGATAAGCTTAAGAGGCATCAGATAATTCACGGCAGTGCGAAACGTCTGAAGTAA
- Protein Sequence
- MKLPIICRTCDARDSDNLYKLTTPTKKYPEKMLSDLLTELTEIDLNGSYAQELPQSLCSSCTMKLISAYYFVRQVRDANEVLMNHLENSQINSHPTCLQELPMELCAEQHVEVKMETKDDEVNGDITCTELPELALFQQAENVDILDEIEADSPKPIDDLLVSPDVLKQEQDTDTSSIGLDLTDIPSQDYENDDSLDDLPLKQLARKWKLKKKPGAKKKYNCYECSESFTNANFLKQHYSRTHKTKSTLNEQQKAKTIDLNLCRPHGYKCIECMICQNKFGKISELRRHFEEHATTIDSEEQLNLKFNELAELLYPDSNNLTEENLKSLIRKELSAGAYDQFYSITNEFGYEMNLDSSETESEDELGAELETKQESKREAKYTCELCQLGYPRKYQLFEHQRLSHTWSEAPHVCSRCDARFVSFELLKHHNETQCKNSQKRFLCRKCPMRFRWRHNRLAHSRDHHTADQTFECNKCNQVFDKKRSLSVHLRTIHDNKPVIPCQWCNRKFFRNDYLLKHLKRHGINEQDIPLAETLIAATTKPNGLKKITCKVCNLQFQRIADLRGHMQLELKLSLSQHKNYESLENYSITNYSGFELHLDDSETEDECTAMPYKSQSVYICELCQVQGRRKYEIMQHQHCMHRFDTMPYNCDRCIFKTVSKNIMDHHKRVQCLSEQKKHICKKCSFKFMWPENLEKHMQIQHAGCEQETLENITQKADSEMKSEASEIGVQLLQCPHCDRTYKLMKRLNYHIRDVHTNQKRKAMKNYLCSLCGRGTQSAASLATHMRRHTGEKPFKCDLCEMAFHNNSEMVYHRRKHTGEKPYHCSICGKNFARSDKLKRHQIIHGSAKRLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00336171;
- 90% Identity
- iTF_00338601;
- 80% Identity
- -