Ccos014637.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chymomyza costata
Gene Symbol
ham
Assembly
GCA_018150985.1
Location
JAECWU010000022.1:384-24673[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 1.4 1.1e+02 3.6 0.0 2 19 144 161 143 166 0.73
2 9 0.0073 0.58 10.8 1.3 2 23 174 196 173 196 0.91
3 9 9.5e-05 0.0076 16.7 5.4 1 23 202 225 202 225 0.96
4 9 7.5e-07 5.9e-05 23.3 1.6 1 23 231 253 231 253 0.97
5 9 2.8e-05 0.0022 18.4 3.7 1 23 259 281 259 281 0.97
6 9 0.0035 0.28 11.8 0.6 2 21 289 308 288 309 0.93
7 9 4.4e-09 3.5e-07 30.3 1.3 1 23 733 755 733 755 0.99
8 9 2.4e-07 1.9e-05 24.9 0.9 1 23 761 784 761 784 0.97
9 9 3.6e-05 0.0028 18.1 4.6 1 23 790 812 790 812 0.98

Sequence Information

Coding Sequence
GTCATAGCCGGTTTACACTTTCGTAGCTGGCTGGAACCCTCATCAGATGTGGCCACATGGCTTAGTAAAATACGCGCTGTCAATAATGAAGAAAATGAGGAGGCCAATTTAAAGCACTTCATAATTGCGGGCTATCTTTGGTACGAAACCAATCGGGATATAAATGCTGGTGAAGAAATAACAATCGATGGAGGACCCAAGCCACCCGTTGAAATCAATGAAAATTTTTTAAATGGTGGCTTAGGAGGTGCATCAACAATGGGCAGCGGGGTGACCGGCGGCGGTTCATTACCCAGCGATGATCGCAGCGATCGTGATAATGGTTCTATTTATGGCGGTGACGATTACCACAAAGATACAAAAAACTCATCACTGAACAGCAATCAAGGTGACAACGAATATACAGACGAAGAGAACGGTTACGATATACGCTGCGAGGTCTGTGATAAAGTCTATCTGGATTTAGAACGCCTGGATGATCATCTAGTTGGCGCACATCATTTCAAGCAAGGCGACGTTGTCTGTGAGCTGTGTTCCCAGCGTTTCTGCCATAGAACCTTGTTGATTAAGCACGGAGCTATAGTCCATAATAATATACGCAAATATTCCTGCGAGAACTGCACCAAGGTATTTTGCGATACATCTTTTCTACAGCGACACATACGCGGCTGTCACGTTGGCGCTAGAAGTCATCCTTGTCCCGAGTGTGGCAAAACATTTGGCACTTCTTCCGGGCTCAAGCAGCATCAGCATATACACTCCTCGGTCAAGCCCTTTGCCTGTGAAGTCTGCTTTAAGGCCTACACCCAGTTCTCGAATCTGTGTCGCCATCGGCGCATGCATAGCGATTGTCGCGTTAACGTCAGCTGTCCCAAGTGCCGTCAAAACTTTAGCACAGTCTCAGCGCTATCCAAGCATAAGAAGTTTTGTGATTCTACGGGCAGTTATCGCTCACAGAGCGCACATCATAAGTCAGCGAGCGGCCTTAGTACCAGCACTTTAGAACGCGCACGTGGCGCACATAATCCAGTGGGACTGCCTTCAGCAAATATTGATAACGTCGCTGCCATGGCTACACCACCGAATCCTTTTCAGCTCATGCTGCGCTCGGGACCTCCATTCTTTCAAGGCTTTCCAGCGTATGCTTTTCGGCCACAAATGCAGTATGGCGGACGCATTGATAGTCTTGAGGCAGAGCTTCGACCCAGACTGGACCGGCAGCGTTCGATCAAACGTGAAGCAAAGCGTGAAAGAAGTCCAGAAATGCCGCCGGTAAAAACGGAGCCAGTGCTGCATGCCAGCGAAGATGAAGATTCCAATTCTATGACCATCGACGTCAAAACGGAGAGCAATGGTGAATTAAAGACGGAGACGAAACATGAGTTCAAGTCAAAGAACATGAAAACTGAGAGCAATGGTGAATTGAAACAGGAGCTCAATCTTGATTTCAAGTTAGACAGCAGCCGGGAGCAGCAGACGGAAGACGATCGCCGCTCTATAGATATTCTGAGCACTTCCCCACACGAGCCCAGCACCACTGACCGTCCTAGCAGCGCTAATCAAAGCCAGCCCACGGAACTGCCACTAGATCTTAGCGTTAGTCGCAAGCGTCGCAGCTCGGCCGGCACACCCACAAATTTGCACAGCAGCTCGCAGAGTGTGCATTCCGACAATCTTGAGCTGGAGCCGGATGTGGATGAAACACCGCTGAAGTTGCAAAAATTACACAGCTCCGGCGAGTCCTCTACCTCGCGTCAGTCCTATAAAGGCAGCAGTCCCACGCCCACCGCTTCACCTGGACTTACACCCACACCCACCTCGCCCAGCACAGGCGGCGAGCTGAGCAGCATGTCGGACAGCGGTGCAAATGCTGCCAGCGTTGCTGCCGCCGCCGCAGCTTCTGCCATGGCCTGTCCGCAGCCCATACATCCACAGCTAATGCTAGAAGAGTTCTATCGCACGCGCGTCTTGGGCGGCTTTCCAACGCATCAGTTTCCTTTTTTAGGCCCAATTGGCGGACGGCCAAGTTTTGAGTCTGCATCACCGAATGCTAATCAACAACAACAACAACAACATGCAGCCCATAGCACGCGTAATGTGCCGTTTCCGCCTGAGCAAAACTTTCGTGAGGCGCTGCGCGCCGTCGGCTTGTCCAGCAGCGTGCTAGCCGCCAGCGGTGGCAAGCTGAAGGATCGCTATACCTGCAAATTCTGTGGCAAGGTGTTTCCACGTTCTGCCAATCTGACGCGTCACTTGCGCACGCACACGGGTGAGCAGCCGTATACGTGCAAGTATTGCGATCGCGCCTTTAGTATATCATCGAATCTGCAGCGCCATGTGCGTAATATACACAATAAGGAGCGACCCTTTCGCTGTGATCGTTGTGATCGCTGTTTTGGACAGCAAACGAATCTCGATCGTCATTTGAAGAAGCACGAAGCGGAGTCTACTGGCGCGCTGGTGTTCAGTGATTCACCTTCGTCGAATGAGGCTGATCATGACTCGCCATTGGATGATATACGTTACTTTATGAATCATGTGTATACGCCTTCTAGCTTGGGTGGTGCGGATGGTGATACGGAGGAGTATGCGGGCAGTGATGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACCTGA
Protein Sequence
VIAGLHFRSWLEPSSDVATWLSKIRAVNNEENEEANLKHFIIAGYLWYETNRDINAGEEITIDGGPKPPVEINENFLNGGLGGASTMGSGVTGGGSLPSDDRSDRDNGSIYGGDDYHKDTKNSSLNSNQGDNEYTDEENGYDIRCEVCDKVYLDLERLDDHLVGAHHFKQGDVVCELCSQRFCHRTLLIKHGAIVHNNIRKYSCENCTKVFCDTSFLQRHIRGCHVGARSHPCPECGKTFGTSSGLKQHQHIHSSVKPFACEVCFKAYTQFSNLCRHRRMHSDCRVNVSCPKCRQNFSTVSALSKHKKFCDSTGSYRSQSAHHKSASGLSTSTLERARGAHNPVGLPSANIDNVAAMATPPNPFQLMLRSGPPFFQGFPAYAFRPQMQYGGRIDSLEAELRPRLDRQRSIKREAKRERSPEMPPVKTEPVLHASEDEDSNSMTIDVKTESNGELKTETKHEFKSKNMKTESNGELKQELNLDFKLDSSREQQTEDDRRSIDILSTSPHEPSTTDRPSSANQSQPTELPLDLSVSRKRRSSAGTPTNLHSSSQSVHSDNLELEPDVDETPLKLQKLHSSGESSTSRQSYKGSSPTPTASPGLTPTPTSPSTGGELSSMSDSGANAASVAAAAAASAMACPQPIHPQLMLEEFYRTRVLGGFPTHQFPFLGPIGGRPSFESASPNANQQQQQQHAAHSTRNVPFPPEQNFREALRAVGLSSSVLAASGGKLKDRYTCKFCGKVFPRSANLTRHLRTHTGEQPYTCKYCDRAFSISSNLQRHVRNIHNKERPFRCDRCDRCFGQQTNLDRHLKKHEAESTGALVFSDSPSSNEADHDSPLDDIRYFMNHVYTPSSLGGADGDTEEYAGSDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
iTF_00338576;
80% Identity
-