Ccos007085.1
Basic Information
- Insect
- Chymomyza costata
- Gene Symbol
- -
- Assembly
- GCA_018150985.1
- Location
- JAECWU010000002.1:8791646-8793600[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.7e-05 0.0013 19.1 2.0 1 23 19 41 19 41 0.97 2 11 0.0002 0.016 15.7 1.3 1 23 48 70 48 70 0.98 3 11 0.025 2 9.1 0.0 3 22 98 117 97 117 0.96 4 11 0.0035 0.28 11.8 2.6 1 23 162 185 162 185 0.95 5 11 0.00077 0.061 13.9 0.7 1 23 222 245 222 245 0.95 6 11 0.00012 0.0092 16.5 3.4 1 23 279 302 279 302 0.98 7 11 5e-06 0.0004 20.7 0.2 1 23 325 347 325 347 0.95 8 11 8.7e-05 0.0069 16.8 3.1 1 23 353 375 353 375 0.99 9 11 3.2e-06 0.00025 21.4 2.0 1 23 381 403 381 403 0.97 10 11 5e-08 3.9e-06 27.0 2.4 1 23 409 431 409 431 0.99 11 11 0.00016 0.013 16.0 0.1 1 23 437 459 437 459 0.97
Sequence Information
- Coding Sequence
- ATGGAGCCAATCTTTTTGAAACTAGAGGAGAATGCTAGCAAGTCCTTGTCCAGCTATAACTGCGAGGAGTGTAAACGCAGCTTTAAAATGCAAAAAGATCTCACACGCCATAATCTTATGCATGCCAAGGAATCGGGAATTTATCGCTGTCGATGGTGTGCTCGTCGATTTTATCGTCTTAACAATCTTCTGCAGCATATTGAAAGGCATGGAGTCAGTGCAGCACAATTGCCCTATGCCGAGGCTCTTATCAATGCCAATCGTTATCTTCATGGTAGCAAGATCATTCTGTGCAAGGTTTGTGAACTGCCCTTCGATACAATTGTCGCTTTGCGCCAGCATTTAAAAACGGCTCCGGCTGGCACTCATCATGACTATAGCTCCATGCAAAATTATTCCATTACCAATCAGCTGGGTTATGAGTTGCATATTGATGACTCGGAAACCGATGTTGACCAGGAGACAACGGACACCTCCAAACACTATACTTGCGGAATGTGTTCCTTGCGTTGTAAGCGCAAATATGAGTTATACATGCATCAGCTGGCCATGCACAGGCTAGAGCGCATAAACGATGGCTGTGAGCATTGCATATTTAAGTGCGTTTCCCAGACGCTTATTGAGCACCATAAGCGCGTGCAGTGTGGAAATACAGAGAAACAGTTTAAGTGCACAAAATGTGGATATAAATTTATGTGGGAGTCGAATCTATTGCTGCACATGGAGCTGCAGCATGATGGTAATGGAGAGTCGAGCATTCTATCGCTAGATGAATTGGATGTCATGGAAAAAAAGCCTTCACAGCTCTGTTTGAGCAATGAGCAGTCGCAGATCTTTCAATGCAATCAATGCACACGCAAATATAATCGTAAAGATAGACTTTCTGCGCACATAAAAAAGTTCCACTCAGCGGATGCTACCAATGTCAGCGTTGTAAAGAAAGAACAGTCTAAACAGCCAGCGGAAAAACGTTTCTTATGCGCCTTCTGTGGCAAGGCGGCGAGCTCCTCCTCAAATCTTATCATACACATGCGTCGTCATACAGGTGAGAAGCCCTTTAAATGCGATTACTGTGACATGGCCTTTCCTCGTTCCTCTGATATGCAATGCCATCGCCGAACGCATACGGGTGAAAAACCACATATTTGTACGGTGTGCCAAAAGGGCTTTGGACGGTCGTACAAGTTGCAGCAGCATATGCGCATACACAATGGTGAAAGACCTTACAAATGCACTTATTGCGAGAAAAGTTTTACGCAGTCTAATGATTTGACCCTGCATATACGTCGACATACCGGCGAAAGACCGTATCAGTGCGGAATCTGTGGCGTACGCTTTATTCAGGGCACAGCATTAAAGAACCATCGCATACAGCATGGACATTTTGAGACAAATGCAGAGCCATCGCGTCGAACATTACTGGAACAGTTTACGGTGGAATGA
- Protein Sequence
- MEPIFLKLEENASKSLSSYNCEECKRSFKMQKDLTRHNLMHAKESGIYRCRWCARRFYRLNNLLQHIERHGVSAAQLPYAEALINANRYLHGSKIILCKVCELPFDTIVALRQHLKTAPAGTHHDYSSMQNYSITNQLGYELHIDDSETDVDQETTDTSKHYTCGMCSLRCKRKYELYMHQLAMHRLERINDGCEHCIFKCVSQTLIEHHKRVQCGNTEKQFKCTKCGYKFMWESNLLLHMELQHDGNGESSILSLDELDVMEKKPSQLCLSNEQSQIFQCNQCTRKYNRKDRLSAHIKKFHSADATNVSVVKKEQSKQPAEKRFLCAFCGKAASSSSNLIIHMRRHTGEKPFKCDYCDMAFPRSSDMQCHRRTHTGEKPHICTVCQKGFGRSYKLQQHMRIHNGERPYKCTYCEKSFTQSNDLTLHIRRHTGERPYQCGICGVRFIQGTALKNHRIQHGHFETNAEPSRRTLLEQFTVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00336136;
- 90% Identity
- iTF_00336136;
- 80% Identity
- -