Basic Information

Insect: Chymomyza costata
Gene Symbol: -
Assembly: GCA_018150985.1
Location: JAECWU010000599.1:3692323-3695154[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.039 3.2 8.5 0.1 1 21 311 331 311 332 0.96

2 10 6.6e-07 5.2e-05 23.5 0.3 1 23 340 362 340 362 0.99

3 10 0.00091 0.073 13.6 0.7 1 23 365 388 365 388 0.93

4 10 1.4e-06 0.00011 22.5 0.7 2 23 395 416 394 416 0.98

5 10 1.3e-07 1e-05 25.8 1.6 1 23 422 444 422 444 0.98

6 10 9.3e-06 0.00075 19.9 1.4 1 23 450 472 450 472 0.99

7 10 0.00011 0.0085 16.6 3.2 1 23 478 500 478 500 0.99

8 10 0.0009 0.072 13.6 0.3 1 23 506 528 506 528 0.98

9 10 6.6e-05 0.0053 17.2 5.4 1 23 534 556 534 556 0.98

10 10 0.00037 0.029 14.9 0.1 1 23 562 584 562 584 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.039	3.2	8.5	0.1	1	21	311	331	311	332	0.96
2	10	6.6e-07	5.2e-05	23.5	0.3	1	23	340	362	340	362	0.99
3	10	0.00091	0.073	13.6	0.7	1	23	365	388	365	388	0.93
4	10	1.4e-06	0.00011	22.5	0.7	2	23	395	416	394	416	0.98
5	10	1.3e-07	1e-05	25.8	1.6	1	23	422	444	422	444	0.98
6	10	9.3e-06	0.00075	19.9	1.4	1	23	450	472	450	472	0.99
7	10	0.00011	0.0085	16.6	3.2	1	23	478	500	478	500	0.99
8	10	0.0009	0.072	13.6	0.3	1	23	506	528	506	528	0.98
9	10	6.6e-05	0.0053	17.2	5.4	1	23	534	556	534	556	0.98
10	10	0.00037	0.029	14.9	0.1	1	23	562	584	562	584	0.96

Sequence Information

Coding Sequence: ATGGATGTTGATAAAATTTGTCGAACTTGCATGAGTCTTTCTGGTCCTTTTCTTTCCATATACGATAATGGTTCAGGCAGCGGCACCGCGGGCTGTTTGGCAGACATGCTGCGCGATTTCACCAAAACCAAGCCACGACGCATAGACAACTTGCCGGAGAAGGTGTGCCTCAATTGTATAAGCGAAATAAATCATTGTTATTCCTTCAAGCAAAAATGCGAGACTTCGAATCGTACATTGCGCCAATTATTGCCCAACGCATTACCTGAGGAGCCGGATGTGCCACCGCCCAAACAAACTGTGGCCAGCATAGACCAAGCCGTGCAAACCAACACAGTTGCTGCAGCAACAACCACAAAAGAAACCCAAACAGAAGACTATTCTACGGAAGCTGAGAGCACCTTACCGCTGAAACAAGCAAGCGTACATGTTCCCAATTTGAGCGCTGATGATGACGACGATGTTTATTATGACTTTGCAGCTTTGGGTGCTGATGAGCCGCTTGAGGAATCGGCTAAAGCCAACAATGAAAATATTATTTTGCATGTCGAGAAAGACGATATGAAATATGAGACCGAAATGATTTATAACCAGTCCACAGGAGAGTTGCATGAGAATGCTCCCGCTAACAAGCAGGAAGAGTACAAGTTTACCATATTTAACAATGCCAATGGCGAAACGGAAATTGCGCCTGCACCTTCATCGCAGGTAACAACACGCAAAAGCGCCGCTAAGTTGCTGCTCCAACAACAGCAGTACGATTCGAGCAAGCGAGCTCCGCGACGTCGCATTGCTATCACAAAAATTGATCAGACACCTTCCGAAGAAAGTCCAAGTCCAACCAAACAATTAAAACTGCCAACGCGTCAAAAAGTTGGCAATGGCAGTGTAACACTAACACCCCCCGCCGACGTCGAAATCAAGCTCAAGTATCGTTGTGAGCGCTGCAATGCGGGATTTGCTCTAGAAAAATCCCTTGCAATCCACCGACGGCAAAAAGGCTGTACCAACCGCAACTTTAAATGCAATGAATGTGAACGCGTCTTTGTGTCCCCTGATCATTTAGCTGAGCATCAGGCCACTCATGGCGTCTACAGCTGCAATGAGTGTGGCCAACTTTGCGAGACCAAGGAGCAGCTTGGCAAGCACATGGTTCAGGGGCATAAAAGAAATCTTCGCAATCAATGTGAAGTGTGTAAAAAAGTTTTTACCATGCTTTCAACGCTGCGTGATCATATGCGCATCCATACTGGTGAAAAGCCATTTGTCTGCAACATTTGCAACAAAAGCTTCACCCAGAATGCAAATCTGCGGCAACATAAGCTTCGGCACTCGGATATCAAAAGCTTTAAATGCGAGCAGTGCTCCCATAGTTTTGTCACAAAGGCCGAGCTGGCGTCCCATGCGCGCACACATACTGGCGACAAGCCCTACGAGTGTGACGTGTGCTCCGCCAAGTTCACCACATCCTGTTCTCTGGCCAAACACAAACGCAAGCATACAGGTGAGCGCCCCTATGCCTGCGACTTGTGTCCTATGCGATTTACGGCGCTGAATGTGTTAAAGAATCACAGGCGAACCCATACTGGGGAAAGACCTTTTGTATGTCCCCACTGCTCCAAAAGCTTTACGCAGCGCGGTGATTGTCAAATGCATCAACGTACGCATCAGGGCGAAAAGATCTACATATGCCCGGTGTGCAACGAGGAGTTCAAGTCGATGGATACAATGCGGTCGCATTTGGTGGTGCACGAGCAGCAAGACAAGCGCCTGGTGCACTTTACACTGCTCAGCAGCAAGGAAAACGGCGTACTTGATGAAAATGACGAGGAAACGGTAGAGGGGCTACTCTAA
Protein Sequence: MDVDKICRTCMSLSGPFLSIYDNGSGSGTAGCLADMLRDFTKTKPRRIDNLPEKVCLNCISEINHCYSFKQKCETSNRTLRQLLPNALPEEPDVPPPKQTVASIDQAVQTNTVAAATTTKETQTEDYSTEAESTLPLKQASVHVPNLSADDDDDVYYDFAALGADEPLEESAKANNENIILHVEKDDMKYETEMIYNQSTGELHENAPANKQEEYKFTIFNNANGETEIAPAPSSQVTTRKSAAKLLLQQQQYDSSKRAPRRRIAITKIDQTPSEESPSPTKQLKLPTRQKVGNGSVTLTPPADVEIKLKYRCERCNAGFALEKSLAIHRRQKGCTNRNFKCNECERVFVSPDHLAEHQATHGVYSCNECGQLCETKEQLGKHMVQGHKRNLRNQCEVCKKVFTMLSTLRDHMRIHTGEKPFVCNICNKSFTQNANLRQHKLRHSDIKSFKCEQCSHSFVTKAELASHARTHTGDKPYECDVCSAKFTTSCSLAKHKRKHTGERPYACDLCPMRFTALNVLKNHRRTHTGERPFVCPHCSKSFTQRGDCQMHQRTHQGEKIYICPVCNEEFKSMDTMRSHLVVHEQQDKRLVHFTLLSSKENGVLDENDEETVEGLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00338565;
90% Identity: iTF_00336131;
80% Identity: -