Ccos003468.1
Basic Information
- Insect
- Chymomyza costata
- Gene Symbol
- -
- Assembly
- GCA_018150985.1
- Location
- JAECWU010000081.1:47198-91695[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 5.8e-05 0.0046 17.4 2.1 1 23 244 266 244 266 0.97 2 18 1.9e-05 0.0015 18.9 0.4 1 23 272 294 272 294 0.97 3 18 0.0028 0.22 12.1 0.9 1 23 300 322 300 322 0.95 4 18 4e-05 0.0032 17.9 3.1 1 23 328 350 328 350 0.97 5 18 9.1e-05 0.0073 16.8 4.7 1 23 356 378 356 378 0.99 6 18 0.00017 0.013 15.9 5.7 1 23 384 406 384 406 0.97 7 18 8.2e-07 6.5e-05 23.2 4.3 1 23 412 434 412 434 0.98 8 18 2.9e-07 2.3e-05 24.6 2.4 1 23 440 462 440 462 0.97 9 18 0.00017 0.014 15.9 6.7 1 23 468 490 468 490 0.97 10 18 0.0003 0.024 15.2 6.5 1 23 496 518 496 518 0.98 11 18 2.7e-05 0.0021 18.5 4.5 1 23 524 546 524 546 0.98 12 18 1.9e-05 0.0015 18.9 8.1 1 23 552 574 552 574 0.98 13 18 1.6e-05 0.0012 19.2 7.6 1 23 580 602 580 602 0.97 14 18 1.8e-06 0.00014 22.2 7.7 1 23 608 630 608 630 0.98 15 18 0.00055 0.044 14.3 9.5 1 23 636 659 636 659 0.95 16 18 0.00019 0.015 15.7 0.9 1 23 665 687 665 687 0.98 17 18 0.0021 0.16 12.5 4.4 1 23 697 719 697 719 0.98 18 18 2.4e-05 0.0019 18.6 1.6 1 23 725 748 725 748 0.96
Sequence Information
- Coding Sequence
- ATGATTAAAAAGGAGCAACAATCGGCTCCAATAATTATAACAACTAGTGCAACATCAGTTCGAACTACAACACAGGCGCCGCAGCAACAACAGCAGCAAACACAACAGGCACAAGAGCTTATTATGCAGCACGTGAGCGCTGCAAGCTCAGCTTCCTCGGTGGTAACACCGGTGGTAACAACTGGCGGCGGTACAACCATAACTTTAGGAGGTGCACCACCATTGCCAACTAAATCAGAGATCAAGGAAGACGGCAAACCGCCACACGGCATAGAAATGTATAAAGTAAATATAGAGGACATTTCACAGCTCTTTACATACCACGAAGTGTTCGGTAAAATACACGGTGATGTGGTAAATCATCAGTTAGCAGCGGCACATGGTGGCCAATTGCCACCACCCCCTCCATTGCCACCGCAAACGCATGCAGTCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGTCCGGGTGAGTTGCTAATGCCTAAGATGGAGGGCGGCATACATGGCGTTGATGGGCAGACGACAGTGACCCTAGCGCCAGATGGTACGCCCATTGCAACGGGCACGCATGTGTGCGATATATGCGGCAAGATGTTCCAGTTTCGTTATCAACTGATTGTGCATCGTCGCTACCATAGTGAACGCAAGCCATTTATGTGTCAGGTGTGCGGCCAGGGTTTTACCACATCGCAGGATTTGACACGTCACGGCAAGATACATATTGGCGGACCAATGTTTACCTGCATCGTGTGCTTCAACGTATTTGCAAATAATACCAGCCTGGAGCGGCATATGAAGCGTCATTCAACGGATAAACCATTTGCCTGCACCATTTGTCAGAAGACATTCGCACGTAAAGAGCATTTGGATAATCATTTTCGTTCGCATACAGGCGAAACGCCGTTTCGTTGTCAGTACTGCGCCAAGACGTTTACTCGCAAGGAGCACATGGTCAATCATGTGCGCAAACACACGGGTGAGACGCCTCATCGTTGCGATATTTGTAAGAAGTCCTTTACGCGCAAGGAACACTATGTTAACCACTACATGTGGCACACTGGTCAAACGCCTCATCAGTGTGATGTATGTGGCAAGAAATACACACGCAAGGAGCATCTAGCCAACCATATGCGCTCGCATACCAACGAGACGCCGTTCCGTTGCGAAATCTGCGGTAAGAGCTTTAGCCGCAAGGAGCACTTCACCAATCACATCCTCTGGCATACAGGCGAGACCCCACACCGATGTGACTTTTGTTCCAAGACGTTTACACGCAAGGAGCATCTGCTCAATCATGTGCGCCAACATACTGGAGAGTCACCACATCGCTGCTCATATTGCATGAAGACGTTTACACGAAAGGAGCATCTGGTTAATCACATACGCCAGCACACGGGTGAGACACCGTTCAAGTGCACGTACTGCACAAAAGCGTTCACACGCAAAGATCACATGGTTAATCATGTACGGCAACATACAGGCGAATCGCCGCACAAGTGCACCTATTGCACCAAGACGTTTACGCGCAAGGAGCATCTAACGAACCATGTCCGCCAGCATACCGGCGACTCACCGCATCGTTGCAGCTACTGCAAGAAGACCTTTACACGTAAAGAGCATCTAACGAATCATGTGCGACTGCATACGGGTGATTCGCCACATAAGTGTGAATACTGTCAGAAGACGTTTACGCGTAAGGAGCATCTCAATAATCATATGCGTCAGCATTCAAGCGACAATCCGCATTGCTGTAATGTCTGCAACAAGCCTTTTACACGCAAGGAACATCTAATCAATCATATGTCACGTTGTCACACTGGAGATCGTCCCTTTACTTGTGAGACTTGCGGCAAGTCCTTCCCATTGAAAGGAAATCTGCTCTTCCATCAACGCAGTCATACCAAGGGACAGGAATGCGAGCGTCCCTTTTCCTGTGAGAAATGCCCCAAGAACTTTATATGCAAAGGTCACTTGGTCTCGCATATGCGCTCCCATTCGGGTGAGAAACCACACGCCTGCACCTTGTGCAGTAAAGCGTTCGTTGAGCGCGGTAATTTGAAGCGCCACATGAAGATGAATCATCCAGATGCAATGATGCCGCCACCACCAGTGCATCCGCATCCACAAATACCGGCTGGTGTGCTGACGCAAGTCAAGCAAGAAGTGAAACCGATCATAAGACGACACGCCATGTTTTTTCGGCGCATTTTGGAGCGCAAAGATACTAGCACGAACCGGGCAGCAAATGCAGCTGCAGCGTCAGAGGGAGCCGCTGCAGCGGGATTACACACAATGACCAATGGCAGGGCGCTGGATGACTATGGCGAGGATAACGAGAGTGTCACTTATGACATGAGAGCGAACAGCAAGGACAATAATAACAATAACAACAATGGTGTAAACAGCCATATGCATAAAATGCAGCGTCGCCAACCGGAGCCTTCACCGCCCATGGGCGCTGTGCAGCTAACCCCTTTGTGGGAGCACATTTTACGTACTCGCCGCCTGCCGGAAACTATTTGTCCGGTTAGCTTATTTGCCGAGTTTCATGAACGTTTGCAGGATCCAGAATGGCAAGTGCGACAGCATGCTTTACGCGTTTTGGTGGATGTTTTGGTGGTCATGCGTTCGGGCGCGGACAAGCATATGGAGCAGCTGACCACACAGCTGGTGGAGAATTTGGGACACTCAGCGCCCACGGTGCGCAAGGGTGCTTTGGATTGTCTGCGCGTTTATTTGGCCGAAACGGCTATGCCGGAAACTATTATGCTGCACATACTAGATGCCGGCCTGGGACAATCAGCGCTGCAGGATCGCTATGGTGGCAGACTAATCTGTGGTGTACTGCTTTCGCTGCCCGCGCTTTTGCAAACTGTACTGCATACAGCACAGCGTCATTTTATAGTGCGGCATACCATGGAACGTCTACTGCAGCGCATGAATCAGCTTATGCAGCAGGAAATAACGCTAAAGGTAATGGCCAAAATTAGTGAGCTGCTGGGCACGCATGAATTCTCAGACTACTTGGTGCAACTGGGCGGCGATGATGCTTTAATGCAGTACGAGCAGTTGTGTAAGGTGTATGGCATTAACGCCAAGTCCATGCATGCTTCTAAGACGGGTGCCTGGCGTGCTACGCTGCGTGAGCCTAGCTGGCATAGCAACGCCACTAACCCACGTTTACCGCAAAGCTCATGTCCCGATGGTCATGGTAAGATTATTATGGAAACGGAAATTAAAATCAATGATGATACGCTGACTATGCGCATACTTGAGGCGGATACAGAAACCGAGGAACCGGATAGTCCGCAACGCAACAGCTTGGACACAAACGAGCTGGTTTGTCGCCCGCTAGCAAGCAGCGCCAAATCGGAACGGGAGCTAGACGCAGGCATTATACAGGTCATAAGCGATTCGGAGCTAGAGGAAGCGCCGCACAATAATGCACAGCATCTGACGCCCTCACGCAGCTTGAAGCGCGTAACCTTTGGCGGCGAGGTGGTCAAAATGCGCACGCCAGACAGCGATGCAGCTTCCGGCGCGAATAATGCCAACAATAACAACAGTAGCCAACTGTCTTCAAGTCAGCACAATACAGCTGGAGGCATTTTGGCAGTAGAACCAGCCACACCCACGCCCTCGCCTTCACCAGTGCAGCAGTTAGAGCGACCTGCAATGGAAATACTCAGCCCAGTCGAGCACAACAAAACCACAGCGCTGACATTGGACATACCAGGCGATAATACCAAACCACTGACAACAGCTGTGTCCACACAATCACCGCAGCGTAAGAGCAGCCAGCAAATGGAGCAATCAACGCCAAGCACCAATACTACTAGCTCGTATGGCTCACCCAAGCGTCAGGACTCCAATTTAAGCACCTCGCCGCGTTCACCTGCGTATCGCAGTCGCAGCAATAGTCCTGCCGGCAGTCTAAACATAAGTCCCAAAGCACCACACAAACAGATTGAAGTGCTGCACAACTTGCAGCGAGATCCTTCGCCGCGTGCGCTGCGTCGTAGTGAAAGCGAAATGCATGAAACCATAACGCCAACACCACCACCTAGACCTGCTTCGGTCTTATCCGCCGAATCACCACGTGGCGATGCACGCAAAAGCTGGGAGGATCTGAACATAGTCAGCTACGAAACTTTAATGGACCTACGCTCTGGGGATTGGCGTAATCGTTTGCAGGGCATAACAGAGCTCGAGCTAGCTTTGCGTTCTTCCAGCGTCTTGGCTTTGGTACAGCCTTGTCTGGATAGTCTATTGCGCACGCTGCTCTCGTCGGAGCGTAATTTTGAGGTAGCCGAGGAGAAACGTGAGCTGCTGGTGAATCTGATAACACGACTGCCGCTGGACAACTTGGAAGAGCGCACGCTGCAGATACTAAGCGGTCTGTGTAGGCAGGGCAATGCCGGTGCGAATCGTGTGTGTACGGCGCTTATGCAACGCCTGCCAGCGGGCACCATTGTGTCCAAGCTAACAGCTCCAGAGTTTCTACATGCCAAAAGCTCAAAGTTTCGCGATCACGCTCTGCAAATGTCCATCTATGCTTTGATGACGTTTCCCAGCACCTGCTTCGATATCAAAAATCTCACCGCCCAAGTTACCTATGCAGCTTTAAATCGCAAACGAAGAGTGCGTCAAACATCTTTGGAGGTTCTCGCTGTGCTTGCGGATATATCGTCGTTGGAAGAGGTTTTGTCAGTGGTTTCAGATATAGCAGAAACAGTAGAGCCTGGCCCGGCTTTGATGGCAGCTGTTAGGGCCAGAATATCCCGCCAGCAGATACCCTTGGTAACGCCAGATGGTGCAGTTCTATACACATTAAATCAAACTGATCATAATGGGGCGGCACGTTATGGCGCTGATATAGATTGGATAACACTCGGTGAGGGTTCGGCATCTCCCAATGCTATCAAGAAGCGACGCATGCGTGCAGCGGCTAAACAGCGCGCGTCGGCTCAGGATAATAATGTGGCCAAGGAAACGATAGCATTGAGTAATAGCTACCATATGGATAAGAATCTGCATCGACATTCCTTTCATTCACCTCCCGAAGCTTTTGATATAACCAGCCCAACGAATGAGTATCCACAAAGAACTAGCTATGGCGCAAAGAAAAATAGTGCCTTTCAAACGAATTACATGGATCGCCGCTTATTGGCCAAGACGTGCTCAGAAACTTCTATGGATGGTCGAAGCACTGACAGCACGACAACAAATAGCAGCAATAGTAGCGGCAGTTTCATACAACTACAACCTACACGCAATATGGATCTAAGCGGACGTCTAACCCGTAACTCTCGATTTCCGGCTATGAATCAGCACACGGATTTCGTCACGAATTTTATGCGTAACGTGCAGCGCGCACCCTATCACTATATGTACGAAGGGGCTTCCGTAAATATGGGCAATGGCGTCTATCCAAAGGTTAACTATGCGATGCCCAAGACGCAACACCAACAACCACAGCAACAACAAGCGCCGCGCAAGAAACTACAACATCAGCATTCCTTTACGCAGCAAAGTAGAGCCCATAATGCTAGTCAAGCTCAAGGCAATTTTAGGACAAATGAAATTTACAACAAAAACGAGCAGTATAGTATTTCCAAAGATGATCTGGCTAAGAAAGATGTTGAGGCACACACAACTAGTGTAAAGGTGGCACCACAAAGTGAAGCGCCCAAGATGACCACAACAAGCGAGCCACACATAGCCACACATCACGTAGACGGCTCGCCCATTTCGCTAAAGTCAACAAGCTACTCACAAAAGTCCACAGCTTCGGCCAAGTCCACAGCCTCGGGCAGTCATAGACCAGTTAGTAGTCGTAGCCGTGGCGACATGGAGCTGGCTGCTACAATCGAAAATCAGGAGGAACTCAGCGTAGATGATATAGAGGAGGAAACGGATCTGTCACAGCCGGAAACAATAGTGGAAACGCATGCTTTAAAACGTAACGAGAGCATAAGTAGTCTGCACAGCAAAACGGAGAGCATAAAGACACAACTGGAGGACAATACACCGCAGTTGTCACGCGCTCAATCCATGAAATCTCTGGCTATTGAGGAGGAAATTGAGGAAAGCAATAGCTTTGTGGTGGTTGAAGAACTGGAAAAACTTGCTGAAACACCCTCGCCGCTCAAACAATTGTCGGATGCCACCAGCAGCAATCAGGAGGACGAAGCTTTACCGCCACCGCAGCCCTGTTCAAGTGCCAATTCACGTAGCGCATCACGTGCCTCCAACAGCGCCAAGACTGCAGCCGATGACTTGCCACTAAACTTACGCAGCTTATCTTTGGACTCACTTTATAAACAAGGCTCGTTGGATATGAGCACCACCGATAACAGCTCCCAATCTGGCTCACAACTGGGTCAACCCTTGCCGGTAAAGCACACACCACTTAAGCAAAAGTCTAAGACTTCATATCTGCTGCGTAATCAGCGTCGTGTTTCACCCGTCAAGCGGGCCATAAAAATGTCCCAAGCAGAGCTATACCCGCAAAGCCTGACACGCTTTGAAAAACCACGCGAAGCGCTACTTAAAACTTTTGACCAGCTGGACTCTAGCAACTGGGAGATCAACGTGGTGGGCCTGAAATCTATGGTGCGTCTTATGCGCTATCATGCTGAGTTTTTGGAGAATCATATGCATATGGTTTGCATACAGCTGACACGTTCCGTACGCAATCTACGCTCTCAGGTGGCACGTGCCGCCTGTCAAGCTGCTAATGAACTCTTTACGCTGAAATCCAAATGCTTGGAGACGGAGTGCGATGATCTGGTTTGTGCTTTGCTACAACGCACTTCAGACACTAATCGTTTTTTGCGCGCCGATGCTACGCGTTCTTTGGAATCCATGGTGGATCATATACATGCAAACAAAGTACTTAATATACTGACCATAAAGGGCGCACAGCACCAGAACGCGCTGGTAAGGACTACAACGGCAAAACTGCTGTTTCGTTTGGTCGAGCGTTTGGGCAGCGAACGAGTTTATAATATGGGACGAGAGAATCGGGACAAGTTCTTTGTGGTGGGCGCTAATTTGCTGTTAGAGGGCAGTTTGGAAACCAGAAGCTATGCCAAGTCCTTATTCCGTGCGCTTTCCGAACATGCCAGCTATCAGCGTTGTTTATTGGAGGTCATACCACCGCGTACTTATAGAAATGTTGAGAAAACTTTGAGAAGCATTACGCGCTAG
- Protein Sequence
- MIKKEQQSAPIIITTSATSVRTTTQAPQQQQQQTQQAQELIMQHVSAASSASSVVTPVVTTGGGTTITLGGAPPLPTKSEIKEDGKPPHGIEMYKVNIEDISQLFTYHEVFGKIHGDVVNHQLAAAHGGQLPPPPPLPPQTHAVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPGELLMPKMEGGIHGVDGQTTVTLAPDGTPIATGTHVCDICGKMFQFRYQLIVHRRYHSERKPFMCQVCGQGFTTSQDLTRHGKIHIGGPMFTCIVCFNVFANNTSLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCDVCGKKYTRKEHLANHMRSHTNETPFRCEICGKSFSRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSYCMKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGDSPHRCSYCKKTFTRKEHLTNHVRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFTCETCGKSFPLKGNLLFHQRSHTKGQECERPFSCEKCPKNFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPDAMMPPPPVHPHPQIPAGVLTQVKQEVKPIIRRHAMFFRRILERKDTSTNRAANAAAASEGAAAAGLHTMTNGRALDDYGEDNESVTYDMRANSKDNNNNNNNGVNSHMHKMQRRQPEPSPPMGAVQLTPLWEHILRTRRLPETICPVSLFAEFHERLQDPEWQVRQHALRVLVDVLVVMRSGADKHMEQLTTQLVENLGHSAPTVRKGALDCLRVYLAETAMPETIMLHILDAGLGQSALQDRYGGRLICGVLLSLPALLQTVLHTAQRHFIVRHTMERLLQRMNQLMQQEITLKVMAKISELLGTHEFSDYLVQLGGDDALMQYEQLCKVYGINAKSMHASKTGAWRATLREPSWHSNATNPRLPQSSCPDGHGKIIMETEIKINDDTLTMRILEADTETEEPDSPQRNSLDTNELVCRPLASSAKSERELDAGIIQVISDSELEEAPHNNAQHLTPSRSLKRVTFGGEVVKMRTPDSDAASGANNANNNNSSQLSSSQHNTAGGILAVEPATPTPSPSPVQQLERPAMEILSPVEHNKTTALTLDIPGDNTKPLTTAVSTQSPQRKSSQQMEQSTPSTNTTSSYGSPKRQDSNLSTSPRSPAYRSRSNSPAGSLNISPKAPHKQIEVLHNLQRDPSPRALRRSESEMHETITPTPPPRPASVLSAESPRGDARKSWEDLNIVSYETLMDLRSGDWRNRLQGITELELALRSSSVLALVQPCLDSLLRTLLSSERNFEVAEEKRELLVNLITRLPLDNLEERTLQILSGLCRQGNAGANRVCTALMQRLPAGTIVSKLTAPEFLHAKSSKFRDHALQMSIYALMTFPSTCFDIKNLTAQVTYAALNRKRRVRQTSLEVLAVLADISSLEEVLSVVSDIAETVEPGPALMAAVRARISRQQIPLVTPDGAVLYTLNQTDHNGAARYGADIDWITLGEGSASPNAIKKRRMRAAAKQRASAQDNNVAKETIALSNSYHMDKNLHRHSFHSPPEAFDITSPTNEYPQRTSYGAKKNSAFQTNYMDRRLLAKTCSETSMDGRSTDSTTTNSSNSSGSFIQLQPTRNMDLSGRLTRNSRFPAMNQHTDFVTNFMRNVQRAPYHYMYEGASVNMGNGVYPKVNYAMPKTQHQQPQQQQAPRKKLQHQHSFTQQSRAHNASQAQGNFRTNEIYNKNEQYSISKDDLAKKDVEAHTTSVKVAPQSEAPKMTTTSEPHIATHHVDGSPISLKSTSYSQKSTASAKSTASGSHRPVSSRSRGDMELAATIENQEELSVDDIEEETDLSQPETIVETHALKRNESISSLHSKTESIKTQLEDNTPQLSRAQSMKSLAIEEEIEESNSFVVVEELEKLAETPSPLKQLSDATSSNQEDEALPPPQPCSSANSRSASRASNSAKTAADDLPLNLRSLSLDSLYKQGSLDMSTTDNSSQSGSQLGQPLPVKHTPLKQKSKTSYLLRNQRRVSPVKRAIKMSQAELYPQSLTRFEKPREALLKTFDQLDSSNWEINVVGLKSMVRLMRYHAEFLENHMHMVCIQLTRSVRNLRSQVARAACQAANELFTLKSKCLETECDDLVCALLQRTSDTNRFLRADATRSLESMVDHIHANKVLNILTIKGAQHQNALVRTTTAKLLFRLVERLGSERVYNMGRENRDKFFVVGANLLLEGSLETRSYAKSLFRALSEHASYQRCLLEVIPPRTYRNVEKTLRSITR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -