Ccos001851.1
Basic Information
- Insect
- Chymomyza costata
- Gene Symbol
- -
- Assembly
- GCA_018150985.1
- Location
- JAECWU010000634.1:419011-421940[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.8 8e+03 -3.3 0.1 31 41 8 18 7 20 0.65 2 2 1.8e-08 3.7e-05 23.4 0.1 8 39 29 59 26 66 0.84
Sequence Information
- Coding Sequence
- ATGGTCCGAACGCTTTTTTTCAGCACAATGGTACGTAATTACAAACGTAAAACACCAAAACGTGATGAAAGCCATGTTCGCCAAGCAGTTGCCGCGATGCAAATGGGCATGTCTTTACGTGCTGCCGCTCATGGTTTTAACATTCCAAGATCGACATTATTATTGCACCGACGTACTAATGAAGTAACTTCGCAACGCACTGAAGTCGACTTACAAAACATTGTTATAACTTCTCAAGGACGTGATACTGTGTTTACTAAAGAAGAAGAAACTGCTTTGGAAGATTATTTGAAAAACGCTTCTGATGTCTTTTTTGGCTTGACGGCCACTCAAGCTGGATCGTTGGCATTTGAATTTGCCACACATGTAGAGGCCAAGTTTCCTGAATCATGGAAAACTGAATCGAAAGCTGGTTTCGATTGGTTTCGCGGATTTATGCAACGGCATCCAGGACTTTCGCTAAGAAAGCCAGAAGCAACTACTTTGACGAGTGCTAGCGCATTCAACGAATATAATGTGGCCACGTTTTTTGAAAACTATAAAACAAATAAAGTTTGGTCCGAAGAGGCTGTGCTTAGGCTGCTCGATCTGTTTAAACAGCACCCGGTGCTATACAACGCAGCACACGCTATGCGCAGCTACAAAACTGTACGCGATTCGGCCTGGCAAGACATAGCAACCAATATGCAGGACATCAGTCCAGTAACAATGACAGAAGTTAAAGTAAAACTAAATGGACTTCGTGGCACATACTCAACGCTTTTAAAAATATTAACTACGGACCCAGATAAGATGCCGAAATTACCGCACTGGTTCAACCATATATCATTTTTGAAAGACCATATGAGTATACTTAAAAATAAACACAAATATACTTCTGCAGACAACACAAATACGGCAACAGGCTATAATAATTGGATAAATCCAGAGATAAAGGTTGAAGATTTAGAAACTACACGCCCATTTCCTACGGATGACACTTATGTGGCATTTGATGGCGTGTCAAACCAATATATAAACACAAATACGGCAACAGGTTACAATAACTGGGTAAATCCAGAGATACAGGCTGAAGATTTACAAACTATACGCCCATTTCCTACGGACGACACTTATGTGGCATCTGATGGCGTGCCAAGCCAAAATATAAAAGTTGAATGCACAGATGATACGAGCTCATTTCCTACAGACGACAGTAATACAACACTTGAGTACGATGAGTTTTTAATTCATGACATAAAAGTTGAGGAGACACAAATGATAAGTTCATTTCCTGCGGAACATAGTGATACGGCAGTGACTTCCCAGTATGGAGGAGATTGGTCTGATCAGACAATACAAAATGATGAGACACAAACTGTGGACTCTTCGAGTGAAAAAAAAATAATTACTACAAGCGCTATAGACAAAAGCAAAAAACAGATCCGCTTAGGCTGGAGATAA
- Protein Sequence
- MVRTLFFSTMVRNYKRKTPKRDESHVRQAVAAMQMGMSLRAAAHGFNIPRSTLLLHRRTNEVTSQRTEVDLQNIVITSQGRDTVFTKEEETALEDYLKNASDVFFGLTATQAGSLAFEFATHVEAKFPESWKTESKAGFDWFRGFMQRHPGLSLRKPEATTLTSASAFNEYNVATFFENYKTNKVWSEEAVLRLLDLFKQHPVLYNAAHAMRSYKTVRDSAWQDIATNMQDISPVTMTEVKVKLNGLRGTYSTLLKILTTDPDKMPKLPHWFNHISFLKDHMSILKNKHKYTSADNTNTATGYNNWINPEIKVEDLETTRPFPTDDTYVAFDGVSNQYINTNTATGYNNWVNPEIQAEDLQTIRPFPTDDTYVASDGVPSQNIKVECTDDTSSFPTDDSNTTLEYDEFLIHDIKVEETQMISSFPAEHSDTAVTSQYGGDWSDQTIQNDETQTVDSSSEKKIITTSAIDKSKKQIRLGWR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -