Ccos004604.1
Basic Information
- Insect
- Chymomyza costata
- Gene Symbol
- bab1
- Assembly
- GCA_018150985.1
- Location
- JAECWU010000100.1:68239-69943[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.7e-18 1.8e-14 53.2 0.0 1 43 58 101 58 103 0.95 2 2 4.3 9e+03 -3.4 1.8 6 14 218 229 213 239 0.66
Sequence Information
- Coding Sequence
- ATGGCAAAACTGATAGAAAACTCGCACGCTTGGATGGGCGCCGCTAGTTCCACTCTGACAGCAGACACCTATCAATATCAACTGCAGTCGATGTGGCAAAAGTGCTGGAACACTAATCAAAATCTTATGCATCATATGAGATTCCGTGAGCGGGGCCCTCTCAAATCTTGGCGTCCTGAGACAATGGCGGAAGCAATTTTTAGTGTTTTAAAAGAGGGCTTGTCGCTTTCTCAGGCAGCGCGAAAGTACGATATACCCTACCCCACATTTGTGCTGTACGCAAACAGGGTCCATAATATGCTGGGCCCTTCTATAGATGGCGGTCCAGATCTAAGGCCAAAAGGTCGAGGTCGGCCCCAACGTATACTTTTAGGAATTTGGCCAGACGAGCACATTAGAGGAGTTATTAAAACTGTGGTGTTTCGTGATGCAAAGGATATGAAGGACGATAGTATAGGCAGCCACTTACCTCCATATGCCCGCCATTCGCCCATTGTTTCCTTCCAGGATATGCCCTTAAGCTACCCTGGCGCAAGTAATGTTGCAGGTGGAGGAACTCCGCTTAGTTCTCTCGCTTGTCCCAATGGAATGCCAAGCGGGGGAATGGGAGGCAGCGGGCCACATGTCGATCATCAGATGTCACAAGAAACCGCAGCTGCCGTCGCAGCAGTTGCTCACAACATACGACAGCAGATGCAAATGGCCGCCGCAGCTCAGCAACAGCACGCCGATCAGGGAGGACCACCACCGGGAATTTTCAACTTACCGTCCCATTTACAATCGCACTCCGGGCCAGGTGGTGTACCAATACCTAAGGCCAGTATATCGCCAGCACTGAGCACCAACTCGAACCCCTCTTTGGCCCCAAGACATGTACCATCACCTTGTGGGCCTTCTGGCATACCAGGTATGCCAAGTCTACCACCTAGCATGGCCGTAGCGCTTCATCGTGATTCCGCTACTGCAGCGCTTTTAAGCCAACAGCATCACCTGCAGCAACTTCAGATGCAGCAACAACATGCGCATCACCTTCACCAACACAAACCAGGATTCGGTGTCAGTTCCATAGCACATTCTTCTGCCTCAACAGCATCTTCAGCCGCATCTGTTGGCGGCTCAATTCAGCAGCAAGTGGACAAAACTACGTCGCAAACGATATTAGAACGCCACCAGAGCAGTCCAATGCGCAGTGAAACGCCACGATTGCATTCTCCACTAACCGAGTTAAGCTTAGAAATGAGCACTTACAAACGAGAATACTCACCTACTCGTCTCTTTACTGACGACTTAGCCGATCTTGTAGGTAGTGTCTCGTGTACCTCGTCTGCAACCACAAATACGACTCCTGCAAAAAGTTCCCTAGCAGGTAGTGCGACAGCTGATATCAGTTCAAGTAGTATTAAGGTTGAACCTATTACCACAAGCAGTGAGTAA
- Protein Sequence
- MAKLIENSHAWMGAASSTLTADTYQYQLQSMWQKCWNTNQNLMHHMRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGPDLRPKGRGRPQRILLGIWPDEHIRGVIKTVVFRDAKDMKDDSIGSHLPPYARHSPIVSFQDMPLSYPGASNVAGGGTPLSSLACPNGMPSGGMGGSGPHVDHQMSQETAAAVAAVAHNIRQQMQMAAAAQQQHADQGGPPPGIFNLPSHLQSHSGPGGVPIPKASISPALSTNSNPSLAPRHVPSPCGPSGIPGMPSLPPSMAVALHRDSATAALLSQQHHLQQLQMQQQHAHHLHQHKPGFGVSSIAHSSASTASSAASVGGSIQQQVDKTTSQTILERHQSSPMRSETPRLHSPLTELSLEMSTYKREYSPTRLFTDDLADLVGSVSCTSSATTNTTPAKSSLAGSATADISSSSIKVEPITTSSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00338256;
- 90% Identity
- iTF_00338256;
- 80% Identity
- -