Ccos004511.1
Basic Information
- Insect
- Chymomyza costata
- Gene Symbol
- -
- Assembly
- GCA_018150985.1
- Location
- JAECWU010000100.1:2596185-2598210[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.6e-16 5.3e-13 48.5 0.0 2 44 353 395 352 396 0.94 2 3 0.044 91 2.9 0.0 28 37 426 435 425 441 0.89 3 3 1.3e-19 2.8e-16 59.0 0.0 2 41 462 501 461 503 0.96
Sequence Information
- Coding Sequence
- ATGAATCACTTAAAATGGATGGGCCATTCATCCACCATTATGGATATACAACGCGCTTTGCGCAATGACAACGAAACTTGCGAAGTGACGCTAGTTGCAAAAGATGGCATCAATGTACGGGCTCACCTATTTGTGCTAAGCACTTGTAGCGATTTAATGCGGAATTTGCTTGTCGATGTGCCAACAGGTCATGAGGCTACCATTGTGTTACCCGATATACGTGGAAGCCTTTTGGAGAGCATGTTATCGTTTATTTACATGGGTGAGACTAGTCTACCCTCCTCGTGTCTCACAGAATTTCTTGAAGCTATAAGCTTGTTGGGCATTAAATCGGCCATCAGTTTCGAGTGCAACACAAGTGCTAATACTAATTTAAATGTCGTTGCCAGTAACGTGGCTATAGAGGCAGCCAAGTCTATTAGTGGCTTGCAAATTGCGCAAACTGAGCTACTGGAGGAGGACGAGCAGGACCCTAATGCTGTGGTAGCCAAACTGGCGGTTTCCAATTCAGTTTTGTCAGACCAACAGCAAATACATCAGACACAAGCAACGCGTGCAATAGAATATATTGATGTTTACAATGACCAGCCAAAAATTACCTATTCCATTGAACATATGAGCGACACACCAAATGGCAACCAATATATACTGACCGAAAACACAGGCACTTTCACAATCACACAATCAACTACACCCGTGACCAAATTGGATGTCTCTTCTGGTGCTGTATCGGAAGTTGGACACTCCAATGTATCACAAGGCATGGTTGAAGATGAAGCGGAAGGCGAAACCACCGAAGAAGTAGAGGAATCAAATATTCCCCTTATCGAGGAAGAATATATTACGCCGTCTGATCCTCTTATAGATATGCATACAGAAGTTGATATAGGCAACGATGATGATGGCATGCCAGAAGGTGATGTTGATGACAGTATGCTTGAAATGAAGCCGCGAAAATCCGAGTTAAAATTGAGAGTACGTAAATTGATGAAAAAGCTTACTACCAAGCAACAGCATTTTACTGCGCTCAAAAGCGAAATTAAGACTGCCAGCGGAAATGATGCACTTGAATTAGCGGCTCAGGCTGTACTCCATGAGGGCCTTAGTCTGCAAAAGGCTGCCGATCGTTTTGATATATCTAAAACCGTTCTTTGGCGACGTGTCCGTACAAATCCGGATTATATGAAGCACAGTCGTGAAAAGCCTGCACTAACGGAGGCCTATGAACGATTGAAAAACGGCGATTCACTGAAGAATATAAGCCAAGATCTGCAAATTCCTATGTCTACATTACATCGCCATAAGGTTCGCTTGGCCGAGCAAGGCCGCCTGCCGGACTTTGTATCCTGTCGACGACGCGACACCACACCAAAAGATGAATTGCGAGACAAGCTCGCCAAAGCTGTACATGCTTGTCTAAACGAAGGAATGTCACAGAATCATGCGGCAAATCTTTTCGAAATTCCCAAGAGCACTTTGTGGCGACACTTGCAGCGGCGTGTAGCCGAACCGGGACAGAAAGTAAAACGTGAGGAGGAGGAGCAAGACGATGAAGATGAGATGCTCAATTAA
- Protein Sequence
- MNHLKWMGHSSTIMDIQRALRNDNETCEVTLVAKDGINVRAHLFVLSTCSDLMRNLLVDVPTGHEATIVLPDIRGSLLESMLSFIYMGETSLPSSCLTEFLEAISLLGIKSAISFECNTSANTNLNVVASNVAIEAAKSISGLQIAQTELLEEDEQDPNAVVAKLAVSNSVLSDQQQIHQTQATRAIEYIDVYNDQPKITYSIEHMSDTPNGNQYILTENTGTFTITQSTTPVTKLDVSSGAVSEVGHSNVSQGMVEDEAEGETTEEVEESNIPLIEEEYITPSDPLIDMHTEVDIGNDDDGMPEGDVDDSMLEMKPRKSELKLRVRKLMKKLTTKQQHFTALKSEIKTASGNDALELAAQAVLHEGLSLQKAADRFDISKTVLWRRVRTNPDYMKHSREKPALTEAYERLKNGDSLKNISQDLQIPMSTLHRHKVRLAEQGRLPDFVSCRRRDTTPKDELRDKLAKAVHACLNEGMSQNHAANLFEIPKSTLWRHLQRRVAEPGQKVKREEEEQDDEDEMLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00339288;
- 90% Identity
- iTF_00338513;
- 80% Identity
- iTF_00337688;