Ccos005160.1
Basic Information
- Insect
- Chymomyza costata
- Gene Symbol
- -
- Assembly
- GCA_018150985.1
- Location
- JAECWU010000379.1:19971557-19985948[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6e-12 1.2e-08 34.5 0.0 1 40 376 416 376 419 0.90 2 4 3.3e-14 6.9e-11 41.7 0.1 2 39 431 468 430 471 0.94 3 4 7.7e-18 1.6e-14 53.4 0.0 1 45 485 530 485 530 0.98 4 4 1.6e-20 3.3e-17 62.0 0.0 1 45 537 582 537 582 0.97
Sequence Information
- Coding Sequence
- GGTCTGCTACGTACCGCCGAACAGTTGAAAATCAAAGGTCTCTGCGAGACAGCCGAGAATGCGGATGATTTGAATGACGCAGCCACCGCAACTATAACCTTATCAGAGAATATACAACAAACGGTTGTTGTCAGTCTGCATCAGACCGCAGACGGGAATTATATACCAGTAACAGGAACTGGTGAGGATTCTGATAGTGAGAAGCCGACAAAGATCTGCAAGACAGAGACATCGGTTGCATCGCCGCAATCCAATTCATCGACCTCAAATAATGCTGCTGGCGTGACCGGCGTGACAGCATCGGGTCAAGCGATTGTGACACAAATTGTAGTAGCGCGCGACGGAAAAGATAAAAATATGACTAGTTTAGGCATGGGCATGAACGGCGGCCTGTTAGGCGTGCCCATGGGATTTCTGGATTTTACACCCGAACCACCAGCACCATCGGCCACACCAGTCACCGTAACGGAACACGTCGATCTATCCTGCAATCCAAGCACGGATACGCGTGATCTATCAAACCCCACCGAACCGCTTGACATAGACAATCATTTGGCGCAACAAATTCATAGGCTCGATCAATCACCCATGCACTCGATATCGCATCATCACACTGGCGACGAGAGCAATTCGAATCTCGTGCAGCATATAAAAAGCGAAGTTATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGCCACACATGCTGAGATTAATGCTGCTACTGTCATGGAGATTGATCCGAGCCAAATAAAGCATGAGCCGGGCATGATTATAACGCCAGAGATTGTCAATATGATGTCCTCAGGACATATGGATATGTACAACTCCGATACGAGCGAGGACTCAATGATGATCGCAAATGGTTCGCCGCATGATCAAAATGAACCGCATTATACGAATTTGGATCAACAGCATGGCGGTCTTGGCAGCAGCGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGCATCCCCTCAACCACTCTCTGGCAACGTGCTCATCGTTTGGGCATCGAAACGCCAAAGAAGGAGGGCGGTACTAAATCATGGAATGAAGATGCATTACAGAATGCCTTGGAAGCACTGCGCTCTGGACAGATATCGGCTAATAAAGCGTCCAAAGCCTTTGGTATACCATCATCGACATTGTATAAGATTGCACGTCGTGAGGGTATACGTTTGGCTGCGCCATTCAATGCCGCCCCAACCACGTGGACACCCGAGGATTTGGAGCGTGCATTGGAGGCGATACGCGCCGGTAATACATCTGTACAAAAAGCCAGTGCTGAGTTTGGCATACCAACAGGAACACTTTATGGACGCTGCAAACGGGAGGGCATTGAACTGTCTCGTTCGAATCCAACACCATGGTCGGAAGATGCTATGAATGAGGCATTAAATTCAGTGCGTGTCGGCCAAATGTCCATCAATCAGGCGGCTATACACTACAACCTGCCCTACAGCTCGCTTTATGGACGTTTCAAGCGTGGCAAATACGATGTTAGCAACATCAGCGGAGTATCTCTGAATAATACATCGGGCAACACAACCGGCAGCATTGAAATTATTGAGCATAGTCAGGAGAACTCGTTGCATATGTTGCAGCAACAGTTCCCACACGAAAGTCCCGAAGTCAAGCTGCATTCATTTATAGCTACTGAGGTTACCTCAAAGTGTGCCTGGCTTAGTTAA
- Protein Sequence
- GLLRTAEQLKIKGLCETAENADDLNDAATATITLSENIQQTVVVSLHQTADGNYIPVTGTGEDSDSEKPTKICKTETSVASPQSNSSTSNNAAGVTGVTASGQAIVTQIVVARDGKDKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSISHHHTGDESNSNLVQHIKSEVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHATHAEINAATVMEIDPSQIKHEPGMIITPEIVNMMSSGHMDMYNSDTSEDSMMIANGSPHDQNEPHYTNLDQQHGGLGSSGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVSNISGVSLNNTSGNTTGSIEIIEHSQENSLHMLQQQFPHESPEVKLHSFIATEVTSKCAWLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -