Ccau011809.3
Basic Information
- Insect
- Chymomyza caudatula
- Gene Symbol
- pnr
- Assembly
- GCA_035041775.1
- Location
- JAWNKW010000147.1:10913716-10919922[-]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.3 5.7e+03 -2.9 0.6 3 10 31 38 30 38 0.87 2 2 1.6e-16 2.8e-13 49.3 2.9 1 35 746 779 746 780 0.98
Sequence Information
- Coding Sequence
- atgtgtAATGTACCGCTTAAGTATCGACAAGTTTGTCGATTGTGCCTCATTTTGGTAAATGAGTGTGATATAGCAGCGCTCCAAATCTATAATTGTGAAACGGCAACGACGAAGATATCTAAAGaccaacaacaagagaaacaacaaaatgaatatgcGAAATCGTGcaatatgaatgaaaaaatgttaaaatgctTTTGCAATGCCCAGGACCCGAATATGTGTCGTTGTCGACGATGTGATAACCCGCTATCAGTAGTTTTGACCAATTATGAGGTGGTGGCCCCCCCCAGCAGTAGTGTTCTTGTTAAGAATCATTACACACATTCACCAACACCAAGTGTGCCTTCTACAATCTCATCAACATCATCTTCATGCAGCTATGAGCCAAATTTATATGCTCAtccatttcaaaaaaacaaaaatatattggaGCAACAACCGACAgtagcagcagccgcagccgcagcctcTTCTTCAGTATTTCGTCAGTATCAATCGTCGTCACCCACACAAATcatacaacagcaacaacaagaacaagcaacaacaagcgtTGCCACAAACATTAAAACTCAAATGGAGCAAGAGCAACATTTTCTAAATACTCAAAATGATATTGTCGAagataaagcaacaaaatcaacaaaaaatatatcacaATTTTATCAGAGAGGAGCTGGCAATGTCTCTACTACCACTACTACAACTACAGTGGAGGAATACAATCAAGAGCATAGCGATGATTCATCATCTCCGCACATTACAATTCAGATATTCAACTGTCTCTCTATTAAGACAATGCCGAATGATGGCTTTCCCACAATCATCTGCCGGGATTGCCGGGCCAAACTTAAATCGTTTTGGATGTTTCGATCTATGGCACTTAACTCTCACAATgctttaaaagattttcttGCAGAAGCGGAAGTTTCCAAACTTGAACCTTCCTATTTAGAAATCAAATTGGacacaattttgaaatcttcGTCTGAAGCTATTGCTGCAAAGGCTCTGACCGAGCTGAGCAAATCTTCAAAAGCCAAGTATTCGAACACAAAAATGGATGGAATGATGAAAAATCCCAGTGAAGTAGTATACAGAAGTgatcagcatcatcatcatcatcatcaacaacaactacagagCAAAATACAAGCACCTTCATTATATCTAAGCTCGTTTAAATCACCAGCAGCCTTAATGCAATCACCTTTAAATAAACAAGATATTGTAACGCCAATAGATAGCGATAAACAATCTGAGAATCTAACtgataaatcaaaaacaaaagatgcaGATGTTgaacaatataaaaacttgcaacagcaactaGAGACTGCCGCAGTGCTTATGgatataagtaaaaaaattgttatttcaCCTCCAAGCTCGAATCCCCAATCTCCATGTCTTTCTGCTCTAGCAGATACAAGTATTAATAGTTCTGTGATAAAATCAAAACGTCCATCAAACGACAATGAAATTCAAGATGACATGGAAATAGATTTATCCGTCAAGAAACTAAAAACTGAATATCCAAATCAGCGGAATATAATCCAAATGCATCACCTTTGCCAAAATCCAATACTCGAAATGCACGCGAATACATCAAGAACTGATGTAGATAATAAAAACTACAGTATTAATATGAATGAAGCCGGACCGTCAGCTTATAAGCCGCAAATATCTAAGATAAAAACAgagaacagcagcaacaatgccTGTCTTTCCGACTTGGAAGACAGCTCTGATTCAAACAAATTAGAAATGGATATTTCATCCGTAATAAATGATAGAAAAACGCCAGACAGTGTGAACTCCGATCATGGAACAGACATGGCTACAACTCAACTTTGGCAAGCATTGGCGCGCTCTGCTGccaaaaataaagaaaaaactccGGCTACGGAACTGTTACGTAATATGATGAGCCAGTCTTTCGTCCTTTCGGTGCCACCAACTGTACCAGTAGGCGTAGCAAAAGTACCTGAAGAACCAATAGCCCTTTTAAAGGATGCTTCGGAGGCTCAACTCAGCAAAGTAAAAATATGTCGAAGGAAGCAAAGTTTCCCTACTAAAACTGATTGCGGAGATGGAACAGGAGGAGCTAAACTGGCAGAATCAGCAACTAACTCAGAGTCTGCCTGCAGTGCAATACCAGATGCAATCAAAGATAAAAAGaATTTCAAGGCTAATGCCACGGTCCTAACTGGTTCTCAAAAGGACATGTCCTGTTCAAACTGTGGCACACTTACCACAACCATTTGGAGACGAAGTGCTAAAGGTGAAATGGTATGCAATGCGTGCGGCTTGTACTTTAAGCTACATGGTGTCAACAGACCTCATTCGATGAGACGTGATACTATACACACGCGGCGCAGGCGTCCAAAAGAATGCGAGAGATCCAAGAAAAGAAATAAGCAACTGGCATGTTCTTCGCGAATAGAACATAAAACAGAAAATGTCAACTCCGCTGTGGAGCCAAACCAGATGGATTTTTTATCACCTGAAACTCTTAGTATATCAGATATAGTATTCAATAAATATAAGACCGAGATGTGTGATGCCGAAGCAGCTGCATTGAAGGATgtttttttaagaagaaataaaTCGCAAATTTCTTCGGCGTTTAATAATACTACCTGCGAAACCGAGGAGTTGTCAGTACCTCTTAATCTTGTTTCCAGTGAAAGCAATACTAAGTTAACATAG
- Protein Sequence
- MCNVPLKYRQVCRLCLILVNECDIAALQIYNCETATTKISKDQQQEKQQNEYAKSCNMNEKMLKCFCNAQDPNMCRCRRCDNPLSVVLTNYEVVAPPSSSVLVKNHYTHSPTPSVPSTISSTSSSCSYEPNLYAHPFQKNKNILEQQPTVAAAAAAASSSVFRQYQSSSPTQIIQQQQQEQATTSVATNIKTQMEQEQHFLNTQNDIVEDKATKSTKNISQFYQRGAGNVSTTTTTTTVEEYNQEHSDDSSSPHITIQIFNCLSIKTMPNDGFPTIICRDCRAKLKSFWMFRSMALNSHNALKDFLAEAEVSKLEPSYLEIKLDTILKSSSEAIAAKALTELSKSSKAKYSNTKMDGMMKNPSEVVYRSDQHHHHHHQQQLQSKIQAPSLYLSSFKSPAALMQSPLNKQDIVTPIDSDKQSENLTDKSKTKDADVEQYKNLQQQLETAAVLMDISKKIVISPPSSNPQSPCLSALADTSINSSVIKSKRPSNDNEIQDDMEIDLSVKKLKTEYPNQRNIIQMHHLCQNPILEMHANTSRTDVDNKNYSINMNEAGPSAYKPQISKIKTENSSNNACLSDLEDSSDSNKLEMDISSVINDRKTPDSVNSDHGTDMATTQLWQALARSAAKNKEKTPATELLRNMMSQSFVLSVPPTVPVGVAKVPEEPIALLKDASEAQLSKVKICRRKQSFPTKTDCGDGTGGAKLAESATNSESACSAIPDAIKDKKNFKANATVLTGSQKDMSCSNCGTLTTTIWRRSAKGEMVCNACGLYFKLHGVNRPHSMRRDTIHTRRRRPKECERSKKRNKQLACSSRIEHKTENVNSAVEPNQMDFLSPETLSISDIVFNKYKTEMCDAEAAALKDVFLRRNKSQISSAFNNTTCETEELSVPLNLVSSESNTKLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00338802;
- 90% Identity
- -
- 80% Identity
- -