Ccau001239.2
Basic Information
- Insect
- Chymomyza caudatula
- Gene Symbol
- pnr
- Assembly
- GCA_035041775.1
- Location
- JAWNKW010000030.1:875075-885893[+]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.7e-18 1.5e-14 53.4 3.2 1 34 179 211 179 213 0.97 2 2 6.3e-19 1.1e-15 57.0 5.8 1 35 236 269 236 270 0.98
Sequence Information
- Coding Sequence
- atggGAATTTTACTTAGCGACGGTGATTCTACATCACGCGTATATCATCCACAATCGCAGCAAGGTGATTCTAACAACGCTTTAAATTTCCTGGCCGGAAATTTCAACGCTCAACTACCAGGAGCTTCTGCCGGTTCGGACGCTGCCAACAGGAGCCCCAGCTACAGTTTGAAAATGTACCACGCAGGCGCCGCAGCTGCCGCTTATACGGATATCGCAGCTGGTAGTGTGGCCAGCGGCACAGTCTCTGGCTATCATCATCAGCAGGCCGTTAATACACCTGTCTATGTGCCTTCCAATCGTGCTCTAACCAACAGCCAGTATAACCATGTGCATTTTGGCAGTTCGGCTGCCCAAAATGCATGGACTTCGGATAGTTTTGGAAACGCGCATGCACAATTGCCAGCACAGTTTTATGCACAAAACGCCGCCGTTATGATGGGGCCATGGCGCAGCGCTTACGATCCGACGGGCTTTCAACGCTCATCTCCCTACGAGAGTGCGATGGATTTCCAGTTCGGCGAAGGCCGAGAATGCGTCAACTGTGGAGCAATATCCACTCCGCTTTGGCGACGTGATGGGACGGGACACTACTTGTGCAACGCATGTGGACTATATCACAAAATGAACGGAATGAATCGgccattgataaagccgaGCAAGCGATTGGTGAGTGCAACTGCTACGCGTCGACTGGGATTGTGTTGCACAAACTGTGGCACGCGCACTACCACACTATGGAGGCGCAATAACGACGGAGAGCCGGTGTGCAATGCCTGTGGACTATACTTTAAGCTCCACGGAGTGAATCGACCGCTGGCTATGCGTAAGGATGGTATACAAACACGAAAACGAAAGCCCAAAAAAACAGGCAGTGTTAGTGGTACGGCTTTGAGCAACGTCAATGCGGGCACAACTCCAAATGCTATTAAAGACTGCAAAGAAGATCGTGAACTTAAGCCATCCCTCAGTAATAGCCCAGTTGAGCGGCAAAATCTACATGGCAGCTTAAACAAACTTCATACTGAACTAAAAAGTTCATTAATTGGCGGGAATTTTGGGCCCGTGAGTTCATCAAGTTCGGCGCTGCATGGAACGTTAAGCCAGCATCATTCACAGCAGCACCAATCCCACCAACAATGTTTTCCACACTATTCCCAGCAACAACACCACGCACATTCTCAGCAACACATATCGGCCCAGCAGGCACAGCCCAATGACAGTACTCCAGGCAATCCATCCATGCACGGCCTGCAGTTGTCCGGCTCCGGTGTGCATCTGTACACTCCACCGTCACTGCAAAATCAAACCAGAAACGCAACCGCCTCCACCTACCCTCCTAGCAAATACGAGCACCGCCtgaccagcaacaacagcggTCACAGTAGCAATGCAGCAAGCGGCGTTTTAGACAGCTCGGGCGGCACACACACTCCCACTTTAAGTAATGGAACACCCTCACCCCATTATCAACATCAACTGCATGCTTCCAGCAATTCGCATAACCATCATGTGGCCGCTGCTCATCATATACACgccgcagccgcagcggcAGCGTATGGCGTTAAGACGGagagcagtggcagcaactaCGACTACGTCAATAATTGCTATTTTGGTGCTTCGTTTGGAGCGCTGGGTGGTGCTTCTAGTAGCATTGGTGGAGCTGCTAATGAGTTGGCAGGCTACCATCATCAACACAATGTCATACAGGCTGCCAAGCTTATGGCAACTTCGTAG
- Protein Sequence
- MGILLSDGDSTSRVYHPQSQQGDSNNALNFLAGNFNAQLPGASAGSDAANRSPSYSLKMYHAGAAAAAYTDIAAGSVASGTVSGYHHQQAVNTPVYVPSNRALTNSQYNHVHFGSSAAQNAWTSDSFGNAHAQLPAQFYAQNAAVMMGPWRSAYDPTGFQRSSPYESAMDFQFGEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLIKPSKRLVSATATRRLGLCCTNCGTRTTTLWRRNNDGEPVCNACGLYFKLHGVNRPLAMRKDGIQTRKRKPKKTGSVSGTALSNVNAGTTPNAIKDCKEDRELKPSLSNSPVERQNLHGSLNKLHTELKSSLIGGNFGPVSSSSSALHGTLSQHHSQQHQSHQQCFPHYSQQQHHAHSQQHISAQQAQPNDSTPGNPSMHGLQLSGSGVHLYTPPSLQNQTRNATASTYPPSKYEHRLTSNNSGHSSNAASGVLDSSGGTHTPTLSNGTPSPHYQHQLHASSNSHNHHVAAAHHIHAAAAAAAYGVKTESSGSNYDYVNNCYFGASFGALGGASSSIGGAANELAGYHHQHNVIQAAKLMATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00339560;
- 90% Identity
- -
- 80% Identity
- -