Basic Information

Insect: Chymomyza caudatula
Gene Symbol: -
Assembly: GCA_035041775.1
Location: JAWNKW010000141.1:12885491-12933912[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.079 6.1 7.6 4.2 1 23 1199 1221 1199 1222 0.95

2 8 0.02 1.5 9.5 0.2 1 23 1227 1250 1227 1250 0.97

3 8 0.0017 0.14 12.8 1.1 1 23 1415 1438 1415 1438 0.96

4 8 5.1e-05 0.0039 17.6 2.4 1 23 1446 1468 1446 1468 0.98

5 8 8e-05 0.0062 17.0 0.2 1 23 1475 1498 1475 1498 0.97

6 8 1.6e-05 0.0012 19.2 1.4 1 23 1504 1526 1504 1526 0.97

7 8 1.8e-06 0.00014 22.2 0.6 1 23 1531 1554 1531 1554 0.98

8 8 0.002 0.15 12.6 3.0 1 23 1560 1582 1560 1582 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.079	6.1	7.6	4.2	1	23	1199	1221	1199	1222	0.95
2	8	0.02	1.5	9.5	0.2	1	23	1227	1250	1227	1250	0.97
3	8	0.0017	0.14	12.8	1.1	1	23	1415	1438	1415	1438	0.96
4	8	5.1e-05	0.0039	17.6	2.4	1	23	1446	1468	1446	1468	0.98
5	8	8e-05	0.0062	17.0	0.2	1	23	1475	1498	1475	1498	0.97
6	8	1.6e-05	0.0012	19.2	1.4	1	23	1504	1526	1504	1526	0.97
7	8	1.8e-06	0.00014	22.2	0.6	1	23	1531	1554	1531	1554	0.98
8	8	0.002	0.15	12.6	3.0	1	23	1560	1582	1560	1582	0.99

Sequence Information

Coding Sequence: ATGAATCCACCCAACAAACGAGGACGAGGCCGAGGCCGAGGCCGACCTCCCAAGCTGAATAAAAATCGACCGGATAtacagctacagcaacaacaagaacaagaagagCAACTAAGCGTCGCCGCTGTCACTTCAAAAGTTCACTTAACAAATGaggcaacaaacacaacaacaccaacaacagcgaACACAACAAACTCAACTGAAAAGCAGCCGCAACAAGACCCAGAACCGCTTTCATCGCCagcagctggagctggagctacaacaacaactgcaccaaaaaacagcaaaagtgACAATGCCAAGGAGTTGCTCCAAATCCGAATGGATGTATGCCGTTGCTGCTACAAGAGTGAATTCGAATTGGACAGCATCTTCGATGCGGAATGCTGTGCGGAGCAAATGAATCAAAATGCGGAAAGAGTGAAGCAGGAGTTGAGCAACTCAGAGACATCATCTTCAACGTTGGAGAAGACAAAGGGAAATTCCGTTGATTCGGCTCTGAGCGGAACACGTTCCAGCAAAGATGAAGTTCTTGAAGAAATGAACATATGGGCGCTCAATGTTAAACGCGACGATGGCTTGCCACAAATGATCTGTGAGCAATGCAAGGCCAGGTTTCTCATGATTCGCAAGTTTAGACGTCGTTCTCAGAGAGTGCAGCAACTTCTACGTGACATGGCTCGGGACATTGAAGAGCGCAATTTAAAGCAGGCAGAAAAACAGGAAGTGGTCAAGAACCACCAGCAAAAAACAGAGAAAATGGAACAGGATAATGCCAAAGAAGAGTTAATTAATAGCGTAGGCAAAGAGTCGCCACTAAAAGGCACCGCGGACATGCAGGTCGGCGACTTGCCGCCAGAGAAACTAATGCAAACACCAAAAGCGCCACGAGGTGCAACTCCAAAAGAGTTGACGACAACAGAGCTACCGCCCCAGAAAGCAAAGGCAACAGGCATGCTCACCCGCTGTGCGAAGCGAGAACATGCAGAGGAGCAAAACTTAAACAAGACTGAAATCGAGGGCGAATTGTCGGATCCGCCGCAAAAAATGCAGCGTATGAAGCCACAATTAAGGAATATGCGAAAAACACACTCAACCCCGTCACCAAAGACTGATAAAAATGGAGAGGATGAAATGATTGAAGACTTACAGAAACCAAGCGCTCTCGATGAAACTGTAAAGAACAGTTTAGAGAAAATGCCgtggaaaacaaaagcagcacgCAAACAGATCAATGGAGAAGGCTCATCTTGTGCATCACCGCTCGCTACTTCAGCTGAACAAAGTGATGATTCTATAGATATTTTTTCAGGATTCATAGACGAAGTCACGAATCAGTCAATACCTACAGATAGCTCCGTTTCGGGTACATGccagtttttaaaaaaaacaaaaaagcctAAAGATCAGGCCAATACCCCGCTATTGTATTCATTGCGACGGAATCAACGTAAACGTTTGGCGGCAACCATAGTAAGCCCTGTAAAGCGTTTGCGTCGCGTGGTGGCACGTAAAAGGAATACGTCGGAGCAACAGCAGAAGGAAAAGACTGAAGCGGATCAGTTCAGCAAGCCGCAACAACTTCAAGTTGAAGAGCTGACCTCATCAACCGAAACAGAAGACGCTGTTGCTTTGTCTATACCACCCGAAGTGCCCTCACCTGTATGTGAGATAGAAATTACAGAGACAATTGATGGAGAGGATGTGGGACAAGCTTTAGTCAGCTCTACGCATGAACAGGAGAATTCTTCAGAATTAATGATACGCATACCTTTAAATACGCTATCCAACGATTTGAGAACCAAGTTAGTCAATGTTGTTGAAGTTAGCGATGTAAATATGCAAGTTGAAGGGGATAACGATGCGGAAAAGTCGTCTGACGAGACTGATGAAGtcaataataatgaaaattcgGAAAATTTTTGCCAGAGTGCTACAGCAGGTAGCTTCAATTCTGCTGCAGCACTCATGGAACATAAAATTGAAGCAAACACAACAGATGGAACGCAAAGTCCAACCAAAGAGATAGACAAAGTGGCTGCAACAGCGTTGCAAGTGGCAGAGTCACCGCATGAGATACAGACGCCGCGCTGCAACCACAATAAGGGTACACCAAATAATGATGCTAATGATTTCTTTGCtgaatttcaaaaacactGTGAGAAATCACGGAATAacttagaagaagaagaaactaaaAATGCTGCACTGCCTCCATTGTTACCAGAGCCAGCAGCTGATGAAAGCTTGGTGCTTAGCTCAGAGAATCCAGCTGAAGCCAAGCGTTTGTTAGAGGTAGAAATGAACGATGTGGAGATTACGCTCAACGGCATACTTAATGAAATGCAAGATCAGCATTTATATACGCCTGTGTGTCCTCATGTTGATGAGTTTTTGTCACCCGCCGATTATACACCGCTGACAGACCAGGAAACAACTAGTGTACCATTGCCACATACAGAAAATCTGTCCACCGAACAGCTCTTTGATAGTGATTTTAATGGCTACGATGCCTTCCCGCCCGTCCATGCTGTTAATGCAGCAAATGAACTTATAGGTTTCCAAAATGATATACCCTGTTTTGAGAACATTGAAGTGGGCACGGATGCGTCAATGGAGGCAAGCTTACAGGAGGAGCTTACCCAGCTGCTAAATGAACTCCAACCAACACAACAAACGCAAGCAGCACCACCagtacaacaacagctgccacAGCCGACGCTTTATCAGGCAGTGGAACAGCTAGCCGCAGAACAGCTAAACACCGAGCCGCTGAGTACAGAAGCGCTAGCAGTCAAACAACAGCTGACAACAACGGTATATCAAACACAGCAGCCCGCCGCAGCCAACAGCACTGAAAACTATCAACTCTACCAGGCGCCATCTGACAGCAGTGGCAAACTGCAGCTGATTAGCTTGCCGCAAGAGCAACAAGTGAGTCCCTATGCCGCTCCTCCACAAACACAGCTACTGACGCAGCAAACCACCCAGCTGCAATGGTCAGCCGTGGGCGGTCTGGAGTCCATCAAAACCACAGACAACAGTAGTAGCATGGACAATCCAACAGCTGCAACCACCACTTATTATATAGACGCCAGTGATCTTTATCAGCCACAACAGCTGGAAAACTGCAGTAACCAGCAGTTGACCAGCTATACCATGGTGCAGGCACAACAGCAGGCAACGACCACTCCTCATCTCGATTCGAATGACAACTATTTAGAGCAGCAATCAGCAGCTAATCAGCCTATTATGATACTCATACAACAGCCAGAAATGGCACAGCCGGTGGCATCAGCCAGCAATCCACATCAGCCGccattgcaaatatttggtgCACCCATTACCAATGAGCTGCATGTgcagcagctacagcaacaacaacaacaactgctgcagcaacagcaccAACTACAGCAAGTACAAAATCAAACAGTATTAaacatgcaacagcagcaacaacatgcaGATAATAACAAACAACGCGTGGTTACGCTCAAATGTCGATTCTGCCACAATGGACCACGCTTCTCCAATAGCTTGGAGTACAGTAAACACATCATTGAGCTGCATCCGGCCGTGGCGCCCTTCAATTGTCCCCACTGCACCATGACATTTGCCGGACGCAATAAACGCTCCCAACACATACTCACGCATCATTTTGTGCAGCATTTCCAGTGTGGCCAATGCACACAAGTTTTTCCAGCACAGCGTGCCTTGGATTTGCACTTGCAGCGTTTTCATGCGCTGGGTGAGCAGCAAAGTGCCCGAGCGAACCTACAGCAAGGTGTACGCGTGGAAGATGTACAACTACAAATTGCAGAGCAGACGCAGACTGAAACCTCGAGTAGCATGACAAGTGGTACGGCAAGCTTGCCACGAAAAACTCGCATATTATGCTGTCCAGATTGTGAAGATGGATCCTCTACGGATGGCCACCATCACGACAAGTACGAGGATTTGGGCACATTGCAACCGCCAGTGGTTTTAACGCCACCCTCAACAGTCGCCTCAATGCCTTCGCCACAGCCCGTGTGTTCGCCGCATATTACCATGCCCTCGCCAGAGCAATCCGAGCCGGATTCTACAACTACGCTGCGTCAGTTCCGAAAAAGACGAAGCTCGCCGTGTACGGCTAGCTTGTACAGCCTGGCAAAGCCACAAATCAACTCGCCTTCACCATCCTCCTCACCATCATCGTCTACCATGGAGTCGGTCAGCGTTCTGCGCGGAAGTCATCAGTGTTTTGTTTGCGAGGAGCGTTTTACCAATGATATTGCTTTAAAGAAACATCAGCAGTTGGCCCATGGCGCACAGACGACCATGCCTTTCGTATGCACCATTTGCAAACGTGGCTTTCGCATGCGCACCGCGCTGCATCGCCATATGGAGACGCACGATGCCGAGGGCAGACCTTACGAGTGTAATGTGTGCCGCGTACGTTTTCCACGTCCCTCACAGCTGACGCTGCACAAGATCACCGTTCATCTGCTGTCTAAGCCCCATACTTGTGATGAGTGTGGCAAACAATTTGGTACGGAGAGCGCCTTGAAGACGCACATTAAGTTTCATGGTGAGCGCGGTTATCCTTGCGATCAATGCGATCGCGCATTCGTTTATCAAAGAGATTTGCGCAAACATCAACGCAGCATACACAGAGGCGAGCTATTTTACAAATGCGAATTCTGTCCGCGATCGTTTTTGCATTATACGGGTTTTCAGGcaCACATGAACACACATCTACCGCTGGGTGTCTTCCTAAACGAGAATAATTCGTTGTCCAAGCTGAAGCCATCTACGGAGCAGACCAGCAGCAAAGATGCAGCCAAGGATACTGCACTAACGCCCCGGAGCAATGATGAGAGTCAGGCTGTGGCGTCTACAATATTGGAAAGCAGCACGACGGGCATGCCAGTTGTGGCTGCAACGCAGCCATAG
Protein Sequence: MNPPNKRGRGRGRGRPPKLNKNRPDIQLQQQQEQEEQLSVAAVTSKVHLTNEATNTTTPTTANTTNSTEKQPQQDPEPLSSPAAGAGATTTTAPKNSKSDNAKELLQIRMDVCRCCYKSEFELDSIFDAECCAEQMNQNAERVKQELSNSETSSSTLEKTKGNSVDSALSGTRSSKDEVLEEMNIWALNVKRDDGLPQMICEQCKARFLMIRKFRRRSQRVQQLLRDMARDIEERNLKQAEKQEVVKNHQQKTEKMEQDNAKEELINSVGKESPLKGTADMQVGDLPPEKLMQTPKAPRGATPKELTTTELPPQKAKATGMLTRCAKREHAEEQNLNKTEIEGELSDPPQKMQRMKPQLRNMRKTHSTPSPKTDKNGEDEMIEDLQKPSALDETVKNSLEKMPWKTKAARKQINGEGSSCASPLATSAEQSDDSIDIFSGFIDEVTNQSIPTDSSVSGTCQFLKKTKKPKDQANTPLLYSLRRNQRKRLAATIVSPVKRLRRVVARKRNTSEQQQKEKTEADQFSKPQQLQVEELTSSTETEDAVALSIPPEVPSPVCEIEITETIDGEDVGQALVSSTHEQENSSELMIRIPLNTLSNDLRTKLVNVVEVSDVNMQVEGDNDAEKSSDETDEVNNNENSENFCQSATAGSFNSAAALMEHKIEANTTDGTQSPTKEIDKVAATALQVAESPHEIQTPRCNHNKGTPNNDANDFFAEFQKHCEKSRNNLEEEETKNAALPPLLPEPAADESLVLSSENPAEAKRLLEVEMNDVEITLNGILNEMQDQHLYTPVCPHVDEFLSPADYTPLTDQETTSVPLPHTENLSTEQLFDSDFNGYDAFPPVHAVNAANELIGFQNDIPCFENIEVGTDASMEASLQEELTQLLNELQPTQQTQAAPPVQQQLPQPTLYQAVEQLAAEQLNTEPLSTEALAVKQQLTTTVYQTQQPAAANSTENYQLYQAPSDSSGKLQLISLPQEQQVSPYAAPPQTQLLTQQTTQLQWSAVGGLESIKTTDNSSSMDNPTAATTTYYIDASDLYQPQQLENCSNQQLTSYTMVQAQQQATTTPHLDSNDNYLEQQSAANQPIMILIQQPEMAQPVASASNPHQPPLQIFGAPITNELHVQQLQQQQQQLLQQQHQLQQVQNQTVLNMQQQQQHADNNKQRVVTLKCRFCHNGPRFSNSLEYSKHIIELHPAVAPFNCPHCTMTFAGRNKRSQHILTHHFVQHFQCGQCTQVFPAQRALDLHLQRFHALGEQQSARANLQQGVRVEDVQLQIAEQTQTETSSSMTSGTASLPRKTRILCCPDCEDGSSTDGHHHDKYEDLGTLQPPVVLTPPSTVASMPSPQPVCSPHITMPSPEQSEPDSTTTLRQFRKRRSSPCTASLYSLAKPQINSPSPSSSPSSSTMESVSVLRGSHQCFVCEERFTNDIALKKHQQLAHGAQTTMPFVCTICKRGFRMRTALHRHMETHDAEGRPYECNVCRVRFPRPSQLTLHKITVHLLSKPHTCDECGKQFGTESALKTHIKFHGERGYPCDQCDRAFVYQRDLRKHQRSIHRGELFYKCEFCPRSFLHYTGFQAHMNTHLPLGVFLNENNSLSKLKPSTEQTSSKDAAKDTALTPRSNDESQAVASTILESSTTGMPVVAATQP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -