Basic Information

Insect: Chymomyza caudatula
Gene Symbol: -
Assembly: GCA_035041775.1
Location: JAWNKW010000040.1:1831468-1835215[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 3.8 3e+02 2.3 5.9 2 20 360 378 359 380 0.92

2 18 1.2 92 3.9 0.1 1 23 389 414 389 414 0.92

3 18 0.011 0.82 10.3 3.7 2 23 425 446 425 446 0.93

4 18 3.7 2.8e+02 2.3 0.9 3 23 487 508 486 508 0.93

5 18 0.27 21 5.9 0.8 3 23 516 536 514 536 0.86

6 18 2.9e-05 0.0022 18.4 1.8 1 23 542 564 542 565 0.96

7 18 6e-05 0.0047 17.4 1.7 3 23 571 591 569 591 0.96

8 18 3.6 2.8e+02 2.4 0.2 1 20 599 618 599 620 0.84

9 18 0.00019 0.015 15.8 0.7 1 22 640 661 640 664 0.90

10 18 5.4 4.2e+02 1.8 2.0 3 21 671 689 671 690 0.88

11 18 0.34 27 5.6 0.6 1 23 709 734 709 734 0.95

12 18 0.058 4.5 8.0 1.9 1 23 760 783 760 783 0.95

13 18 0.00079 0.062 13.9 0.4 2 23 789 811 788 811 0.92

14 18 0.0026 0.2 12.3 0.5 2 23 815 837 814 837 0.95

15 18 0.0011 0.089 13.4 3.6 1 23 843 865 843 865 0.97

16 18 0.009 0.7 10.6 1.6 1 23 869 892 869 892 0.96

17 18 7e-05 0.0054 17.2 1.4 1 23 898 921 898 921 0.98

18 18 0.00036 0.028 15.0 3.2 3 23 931 953 925 953 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	3.8	3e+02	2.3	5.9	2	20	360	378	359	380	0.92
2	18	1.2	92	3.9	0.1	1	23	389	414	389	414	0.92
3	18	0.011	0.82	10.3	3.7	2	23	425	446	425	446	0.93
4	18	3.7	2.8e+02	2.3	0.9	3	23	487	508	486	508	0.93
5	18	0.27	21	5.9	0.8	3	23	516	536	514	536	0.86
6	18	2.9e-05	0.0022	18.4	1.8	1	23	542	564	542	565	0.96
7	18	6e-05	0.0047	17.4	1.7	3	23	571	591	569	591	0.96
8	18	3.6	2.8e+02	2.4	0.2	1	20	599	618	599	620	0.84
9	18	0.00019	0.015	15.8	0.7	1	22	640	661	640	664	0.90
10	18	5.4	4.2e+02	1.8	2.0	3	21	671	689	671	690	0.88
11	18	0.34	27	5.6	0.6	1	23	709	734	709	734	0.95
12	18	0.058	4.5	8.0	1.9	1	23	760	783	760	783	0.95
13	18	0.00079	0.062	13.9	0.4	2	23	789	811	788	811	0.92
14	18	0.0026	0.2	12.3	0.5	2	23	815	837	814	837	0.95
15	18	0.0011	0.089	13.4	3.6	1	23	843	865	843	865	0.97
16	18	0.009	0.7	10.6	1.6	1	23	869	892	869	892	0.96
17	18	7e-05	0.0054	17.2	1.4	1	23	898	921	898	921	0.98
18	18	0.00036	0.028	15.0	3.2	3	23	931	953	925	953	0.89

Sequence Information

Coding Sequence: atgtcGGAAAACAGTAAGGCGAATCCAAGCTGCCTGCATtgcagcacaaacaaaaaagtacaatATCAGGAAATATTTGATGAAGTGGGCATTGAAATCGGCTTGGCTGATTTATTGTCCAAGTTTTACAATCTAAATGTGAAATCCAAGGTTGGTCAAGCGCAGTTGCTCTGTAATAACTGTGTAAATGAGCTGGTACGATTGTACGATATTGATgagcttaaaaaacaaaacaatgccaaaactAAACCGGCGCAGGCCAAAAAAGTGCCGCCTCAgcccaaaaaaagtgaaactaaacaacaacaaatcaagcctgcagcagcaacatcagcacCTAAAACCTCATCAAAGGCTGTTTCCTCCGCGTCCACCGTAGTTGAGGCACCGCCAGCAAGAGCGCGTGTAACACGAGCGAGTCATTCTATGGCTCTTGGCGCAAAATCTGCGTCCACAAAACCTGCCGCTAAGGTGGATAAACCATCCCAGTCAGTGCAACCGACTGCGGCCAAAACTGCTGAAACTAAGGCTGTGACTGTTGCAGTGgctggaaaaacaaaattgaccAAGCTGGTCTTGCCCAGGCAGACGACTATCACCAAGATAACTACCAAGAGGAAAAGTGCAGAGCCAATCAAAGtgacaaaaaacattttgaagccTGATGCTAGCGGATCACAGGATGCAATTAATGATTTAATGCAAAACATATTAGCCGAGGATGGCGAAGCTACAGAAATTAATGCTAAAACAAATGGTCAAAAACCTACATCTAAATCAGTCCTTGAAAGTGAGAGCTCTTATTGTGATATTGAAAAGCTGGAAATTGATATTCCAGAAGAAATAGAAGAGGAATTATATAGCCTTGACTCTGACGGCGTCAAATTAGATGAATTaaaaatcgatattattggtGCAGTTAAAAAAACCGAGCAGATCAACAGCGATGATTCTGCTAACGTGGATCCCTTCTTTTTTGTGGCGATTAAAGATAagGACGACGTAGACAATTTGTATGAATACTTGGAGACTGCTGTAAAAACTTCCTTCGAGACTTTAAGTTTTGATTGGGACACAGTTTGCCAACATTGCTCTCTAAAATGCTCGAATTTTCAAAGCCTGTGTAAGCACGctttaaagtgtaaaaagtATCAAAACGGAAGCTATCAGTGTCCCATAGATGACTGTACGGAAATGCTCAAGGGTCGCAAAAAGATGGCAATGCATTTGGTAGTGCAACATGCTGCAGATAATAACATTCCCATATATGGCAGCTGTCCGGAATGCCACATgactttttcaaatattatgaATTATAACAAACATTCATGCGCTCACATCTTCAAAAAGAAACGCGGCGCTCGCTTGTATTGCAATATGTGTGCAATAGAATTTCCCTCTTGGAAACGCTATCTTTTCCACACGCAATTCCATTTCGAAAACCATCGTCCTAGAGcttgttttatatgcaattatgTTGAGTACGATCTGGATAAACTGTTTCATCATTTAAATTACTTTCATGAACCCGAGGGAACTTTGTTCTGTACCACCTGCGATCGCATTTTTCGCGATGCGCATATTTTTGAGGAGCATAAAATAGCACATACAGTTTCTGGCACTTATACTTGCAACGAATGCGGTTCTACTTTTGAAACACGCGGTCGCTTAAATGGGCATATGcgttCTCATCATGGCGCTTTGATATGTTGTGAACTCTGCTCAAAGGAATTTTCTTCGGAAGCAACTTTTAATATTCACATGCGCACTCATTTGATCATACAGCGCGACCTTTATGTGTGCACTAATTGCAACAGGTTGAGCGAAAGTCATGAGAGAATGAAGgcACACGTTGAAAGCGAAGAAGTGGGTTCATGCCTTGGCGTTGAAGTGATTAAAGAAGTGTTGCGCGATGCATATATATGCGAGTATTGCTCGACTTACTTTAAATCTAAAGAGGCTTTGCGTAAACATCGCGAATCGGGAGTCCACGAGGATGGTCTTTTCTGGTGTGAGCCGTGCTTGAAGCAGTTTACCCATGTCAAACTATATCGTCATCATTtaagacaacagcagcaaacgcGTACAGATACAGGACATAGAAAACTGGAAATGTGTGTTTACTATATGTGTGATTATCAGAACTGTGAAGATGCATATGTGAATTGGAACTCACTGTATACTCATAAACGTCGCACGCACGATATACAAAAGTCTATTGCATCTATAACGCCCGTAGCGAACTCACGCAAAGCTAACAAAGTGGACCAAGTCAAATTTATATGTCAATTTTGCAAGAAGGAATGCCAAACAAAGATGTCGTTAGCAGTACATGTTGCGCGAAGTCACAACAACAATAATCTTATATGCCCCATATGCAAGGCATCCTATAAGAATGAAGAACTGTTGCAAAAACATCATGAATACTGGCATGAGCCAACCGAGTGTCCCACCTGCTTCAAAATGGTTAAGAATCGTCGCAACTATGAAACCCATGTGAATGTGGTGCATTCCAAGACAAAACGTTACCACTGCAGCGTGTGTAAAAAGGGTTTTTATCATAAGAGTGAAATGGCAGTGCACGAGCGGTTGCACACCGAGGCACACAATTGCGAGATCTGTTCTTTTAagaccaaaaacaaagcatCCTTGGATCTTCATATGCAGGttcaacatttaaaaaaatatccatATGAGTGCAAGCTTTGTAGTAAGGGCTTTGGACGCAAGCAAGGCTTGACCTATCACATGCAACGTACCCATGGCGAAAAGCACCGATGTCGAGATTACTGTGCTGATGGCTGTGGCAAAACTTTTCCTACGTTGACCCATTTGAGCGCACATGTACGCAAGGTACATAATAGCACTATATTGCTGGAGGAGCTTGGTGATAGCGATATTGATGAACCACAGCAGCCAAAGCGACGTTGCTATAAATTTGATGATATGCGTATAGAATTTATTGGCGCAGATGATGAAGATATTGACAATGAAACTTTGAATTATGAGGAAATTGAGGACGACGACAATGGAGAAAGTGAAAGGAATGGAGTAACGGAGATAATCGAAGTGCTGGATAATGATGACTAA
Protein Sequence: MSENSKANPSCLHCSTNKKVQYQEIFDEVGIEIGLADLLSKFYNLNVKSKVGQAQLLCNNCVNELVRLYDIDELKKQNNAKTKPAQAKKVPPQPKKSETKQQQIKPAAATSAPKTSSKAVSSASTVVEAPPARARVTRASHSMALGAKSASTKPAAKVDKPSQSVQPTAAKTAETKAVTVAVAGKTKLTKLVLPRQTTITKITTKRKSAEPIKVTKNILKPDASGSQDAINDLMQNILAEDGEATEINAKTNGQKPTSKSVLESESSYCDIEKLEIDIPEEIEEELYSLDSDGVKLDELKIDIIGAVKKTEQINSDDSANVDPFFFVAIKDKDDVDNLYEYLETAVKTSFETLSFDWDTVCQHCSLKCSNFQSLCKHALKCKKYQNGSYQCPIDDCTEMLKGRKKMAMHLVVQHAADNNIPIYGSCPECHMTFSNIMNYNKHSCAHIFKKKRGARLYCNMCAIEFPSWKRYLFHTQFHFENHRPRACFICNYVEYDLDKLFHHLNYFHEPEGTLFCTTCDRIFRDAHIFEEHKIAHTVSGTYTCNECGSTFETRGRLNGHMRSHHGALICCELCSKEFSSEATFNIHMRTHLIIQRDLYVCTNCNRLSESHERMKAHVESEEVGSCLGVEVIKEVLRDAYICEYCSTYFKSKEALRKHRESGVHEDGLFWCEPCLKQFTHVKLYRHHLRQQQQTRTDTGHRKLEMCVYYMCDYQNCEDAYVNWNSLYTHKRRTHDIQKSIASITPVANSRKANKVDQVKFICQFCKKECQTKMSLAVHVARSHNNNNLICPICKASYKNEELLQKHHEYWHEPTECPTCFKMVKNRRNYETHVNVVHSKTKRYHCSVCKKGFYHKSEMAVHERLHTEAHNCEICSFKTKNKASLDLHMQVQHLKKYPYECKLCSKGFGRKQGLTYHMQRTHGEKHRCRDYCADGCGKTFPTLTHLSAHVRKVHNSTILLEELGDSDIDEPQQPKRRCYKFDDMRIEFIGADDEDIDNETLNYEEIEDDDNGESERNGVTEIIEVLDNDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00337022;
90% Identity: iTF_00337022;
80% Identity: -