Ccau012758.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chymomyza caudatula
Gene Symbol
RREB1
Assembly
GCA_035041775.1
Location
JAWNKW010000150.1:3729231-3735396[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.035 2.7 8.7 0.8 1 21 238 258 238 260 0.93
2 13 0.00033 0.025 15.1 0.2 1 23 270 292 270 292 0.98
3 13 2.3e-05 0.0018 18.7 7.5 1 23 298 320 298 320 0.98
4 13 5 3.9e+02 1.9 0.1 1 20 532 552 532 556 0.68
5 13 1.2 97 3.8 6.4 2 23 562 583 562 583 0.91
6 13 0.023 1.8 9.3 0.2 1 23 748 770 748 770 0.97
7 13 1.2e-05 0.00093 19.6 0.7 1 23 780 802 780 802 0.99
8 13 0.00081 0.063 13.9 2.0 1 23 808 831 808 831 0.97
9 13 0.0029 0.22 12.1 2.0 1 23 1148 1171 1148 1171 0.95
10 13 8.4e-05 0.0065 16.9 0.3 2 23 1562 1583 1561 1583 0.97
11 13 0.14 11 6.8 6.3 1 23 1589 1612 1589 1612 0.97
12 13 0.0082 0.64 10.7 0.5 3 23 1821 1841 1819 1841 0.96
13 13 0.0013 0.1 13.2 4.8 1 23 1847 1869 1847 1869 0.99

Sequence Information

Coding Sequence
ATGATTGcgacacagcaacaacagccacaaaaaacaacgacaagcaacacaacaacagccagcAGCGCACACAGTGATGAGGCGCAAATGGAACGCCATCGTCGCGATTCCACCACTTCAGAGTCCTCGCTAGAGCATCTAGATTTGGGTCGCACACCAAAGAAGCTTAACAGCGCCAATGGCGCTCCACAGCCCACATCCACGCCACATACCAACGGCAACGATTTGAGCCAACAGGCACGCAAACGCAAGCTgcgccaacaacagcagtcgTCGCTGCCGGAACGATCTTCAGCGCTGCTCTCCGACGAGGATGAGCCTGCACATAGCGATGAGATTTCGCAGCGACAGAGGCATAAGCAGCGCCGCAGCAGCGCACGTGGCGCCACCGCTAGCATTGTGATGGACTACAGCAGCGGCGATACCAACTCGTTGCGTAAAAAGTTTCGTCTCAATCGCAGCAGTGCATCCGGCGAACTATCCGAGTCCGGCTTTGTGGATGCCAGCACGCACAGCGGTTATTTGCTTAATGCGTCGGCTACCTCCTCCACTTTGGCTAGTGGCGCACAGACAACAGCGCTGCCTTTGGCAGCGGCCAGCTCATCGCGCGGCAGCAGTCACAGTCATAGTAGTAGTGGTTCAGGTGCCTCCTCGCCGCATGGGTTATCTAGCGCGGAATCGGGTATTGGTGCTGGCGATGAGCACATGAAATATTTGTGTCCCATCTGTGAAGTGGTCTCTGCCACGCCCCATGAGTTCACCAATCATATACGCTGTCATAACTACGCCTCGGGTGATACCGAGAATTTTACATGCCGCATTTGCTCAAAGGTGCTCTCGTCTGCGTCCTCACTGGATAGACATGTCTTAGTGCATACCGGAGAGCGGccatttaattgcaaatacTGCCATCTGACCTTTACCACAAATGGAAATATGCATCGTCATATGCGCACCCATAAACAACACCAGCAGTCTGGACTACAGCAAGCTGGTGGCCACtcaacgcagcagcagcagcgacgtcaCTCCCATGGTGGCAAAAATGGTAGCTCCACAGCGGGAGCGAATGCGGGTATGGCTGCACAGCAGCGTTTGAATGGCGGTGCCGGCATCGAAAGCTATGAAAGCGATGGCAGCTGCTCCACGGATGTGTCAAGTGCCAATAGTCAAAgctatagcaacaacaacaacaacaataacaacagccataaagcgaacaacaacaatgtaagtaacaacaacaatagcccAAGCGGCTTAAAGCGTCAGCAGAGCATCGACGCTGCGTCATCAGTGCCCAAGCAGCGACGCGTGAAGACCacaattaacaacaacaacataattGACGCTGacgaagcagaagaagaaagatTGGCCCAACAAACTCCAAGTCCGGCCGACAACGCTGATGCTAAAGCCAATGAAGCTGATGTCAAGCCGGATGCGGACTTTGTTGCAGCGCATGCTACGCCCGTCAGCACGCCACAAAGCTCACCCTTGCATGAGGCCATTACCAGCACACCAGATGTGGCCACTTTGCTGGCTGGCGCCAATGTCTCACCGGCTGCATCACCTGCATTGAGCCTGGAACATAGCTGCCCGGTTTGTGGCACCACAGAATTTGATGGTCTCGCCGGCTTGTATGCACATTTGGATGCTGAACATACAGATACGCTAGCTAAATGCAGGCACTGTGATGTGGTCTATCGCACGCATCGCCAGCTGCAGATGCATCCCTGCACACATCGTCATGCAGGAGCAGAAATGCCGCCCTTACTGGGCGCCAGCTCATCGCCGCTGCATCAGCATAACGAAGATGATGAACAgtatgatgacgatgatgatgatgaggacaATGGCAATGATGATGAGGATCAGCGCCAGCAAGTTGAAGCGATTGATGAGGCACAACATCAGCGCGAGGATTTCTTTCGCCAGCTGTATCTTAAGAACAAGGCTGCcaatgccgctgctgctgccgctgccaatgGCCCATTATCGCCCATTTATAATGCAGCTGGCAGTGAGATCAAATGCGAACCGGACAGTAAGCCAGACCTAGCCGACATACAATCCATTTTGAACATGACCAGCTCTTCGTCCACCTCAAATTTCTTGCGCAATTTTGAGCATACAGTGAACACGCCCTCCAGTCAATACAGTTTGGATGGCAAGGACGAGGAAGAGGCTCAGGATGCGTTTACCTCAGAATTTCGCAAAATGAAACTACGCGGTGAGTTTCCCTGCAAGCTTTGTAGCTCAGTGTTTCCAAATTTGCGCGCGCTAAAGGGACACAACCGTGTCCATTTGAGTGCCGTCGGCCCGGCTGGACCTTTTCGCTGCAACATGTGTCCCTATGCGGTCTGTGATAAGGCTGCGCTAGTGCGTCACATGCGCACACACAACGGAGATCGTCCTTATGAATGTGCCGTGTGCAATTATGCCTTCACCACCAAGGCCAATTGTGAGCGGCACTTACGTAATCGTCATGGCAAGACCACACGTGATGAAGTCAAACGTTCCATAGTCTATCATCCAGCAGAAGATGCCTCTTGTGATGAGACCAATGCCAGCCCCTGCAAGACCAGTTCACgcttgcagcagcagctttacGGTGCGGATGCAGCTGATTTGGATTTGGCTGATTTAAGCTACCGCTCGAGCACGCCAACCTTGTCCGAGCAGCGTGCCACACCTGTTTCACAACTGAAGAACATGCTACTGGCGGAACCGCCAATTCAAGCGCCCAACCATTCAAAGCAGCCGCTAAAGATACAGGTTAAGAGCTTGGATCAGCTAGTGGACaagtcgcagcagcagcagcagtcccAGACGGAGTCCACACCCAGCACAGCACCCATTGATCTAAGCATGGATGTGCTCGATCTAAGCAAGAAACCTAGCCTGGCCTTACCAGCCGCAGCCGAGCTAGCTGCCGCCttagagcagcaacaacaacagcagcaacaacaacaaatgctgcTGGCCCAACAGCAACTCTTTGGCGGCACTGATCCAGCCGCACAGTACATGCAGCAAATCCTGCGAAATCTAGTGTTCCAGCAGCCCACTCCTTTTCCCTTCTTTGGCTTTATGCCGCCAGCAGCCAACTCAGCCAATCTGGCCGAAACTTTAATGGCACGTATGTTTGGCGGCGCCGGTGCTACTGCCAATGCAAATATGAATCTATCGCCACAAGCTGCAGCTCCAGGCAATGCAGAGAAggctgcaacagcagctatGCTGCCACAAATAAGCCCACTATTAGCTGGCACTGCCGACAAGTCTAATGCGCCGCTAATGGCTGCCCGTTTGCCGCATGCTGCAGCTGGGCTCACATCCAGCGTACCACTGCCTGGTGGACCCGTCAAAATGGTCATCAAGAACGGCGTTTTAATGcccaaacaaaaacagcgaCGCTATCGCACCGAGCGACCCTTTGCTTGCGAACATTGCTCGGCTAGATTTACCCTACGCTCGAATATGGAGCGTCATGTAAAGCAACAGCATCCACAGTTCTATGCGCAACGTCAGCGCAGCGGTCATCATGTCATGCGTGGACgcggagcagcagcagcggccgcGGCCATGAACAGCATAAGCCACTTGCAAGCAACAGCAGGTTATCGTGGCACAGCACAGGTACAAGGACAAGGGCAtgctggtggtggtggcgcAGGTACAGCGCCCATATCGGAGCAGGTCAAATATGCAATATTGACGCAGCAGCTAAAGGCGCGTAAGGATACGGATTTGTTGCAACAGGCATTGGCGCATGGTTCCAGCAGTGTAACAGCCAATCAATTACTGCATTTTGGCTATGGGCATATGAATGGACACGGGCATGGACATGCCCATGCACAGCACGGTGAAGTGCAGCACAATGGCAATAATAACGGCCATAATATAAATGCCAGTGTTATGGATGATGATGAGCCCAAGCTGGTAATtgatgaggatgaggatgatCAGGGACAGGAGCACGAGCAGAATTTCGATGAAGATatcaatgatgatgatgatgaagaagaatTGCATgaggaagatgatgatgatgatgatgatgagcagGAACTGCCTGAAGAGCAGAAGTATGATTATGATGACGAGCACGGCCTAGATGTTACCAAGGCTGCCGTTGACGAAGCTGCACTAATAAAACCTGCGGAAACGCTGCCAAAGCCAATCGAACAGCTATGCCCACGCACGCCTTCACCCACACCAAAGGCCGGTGTCTCTAATGAGGCAGCCAAAAAAGTAGCCGAAACCATATTAGAGCAGGCCATTAAAGCGGGCAAAACCGAGCCGCTAGCCAAGCCCACACAAACGCCAACAGCACCAACCACAcccacaaacgcacacaccaTGAAAACAATGATTGCTCAAGCCGAATCTGTGGCCAAATCGCTCAAAGAAGTGGCTAGCTCGCCCTTTAAAGACGAATCTCAGGATCTGGTGCCGGTGGCCAAGCTCGTAGATAATGCAACCAGCAATCAAGTTTCATTTAATAACTATTTTCGACCCGGTGATGTGGCCAATCACATGGAGCAAAGCGACGAAGAGGGTCTTGTAGCCTCGGGCAGCGCCAGCGAGAGCAATAACTCTGGCACAGAAGATGTACCCAGCAGCAGCACGGAGCCCAAAAAGAAATCCGCTTATAGTCTGGCGCCCAATCGTGTCTCCTGCCCCTATTGCCAGCGCATGTTTCCCTGGTCCAGCTCCTTGAGACGCCACATATTGACGCACACTGGACAAAAGCCGTTCAAGTGTTCCCATTGCCCGCTGCTGTTTACCACCAAAAGCAATTGCGATCGTCATTTACTGCGCAAGCATGGCAATGTTGAGTCTGCCATGTCTGTTTATGTGCCCACCGAAGATGTCAGCGAGCCCATACCCGTGCCCAAGTCGGTAGAGGAAATagaacagcagcagcgtcagcgCGAGGATGAGGAACGCCGACGCAAGGCAGCGGAGCAACATGCTGAGCAGCTAGAGCGCGAGCGACGTGCACAGCAGGAGGCACAACGCCAGCTGGAACGGGAACGCGAACGTGAACAGCAAAAGGAGCAGCAAGAGCATTTACTCAAGCAGCTGGCCGCGGCAGCGCATCTTAACCAACAAATGAAtgtggctgctgcagctgcagcggctgcagcCGTTGCTGCGGTAAATGCGGCTGAAGCTAATGCTACCAACACTTCCGATTTGCCCTACAAGTGCCACTTGTGTGAGTGCTCCTTTGCGGAGCGTTTGCTGTGCCTGGAGCACATTAAGCAACATCATGCACAGGAGTTTACCTTGCTGCTGTCCAAAGGCGCCATTGAGACAGATGTGCTAGAGCCCACAGGCACAACAGTGCTGGGCGCCGgcgctgatgatgatgatgagcaaACGTCCAGCTCTAACAATGCACAGCGTGGCGGCAAATATCCGGACTACAGCAATCGCAAAGTTATATGCGCTTTCTGTGTGCGTCGCTTTTGGTCCACCGAAGATTTGCGTCGTCATATGCGCACACATTCCGGCGAGCGTCCATTTCAGTGCGAGATTTGCTTGAGAAAGTTTACGCTAAAGCATAGCATGTTGCGCCATATGAAGAAGCACAGCGGCCGCGCTTACAATGGCGCCAATGGCACTGGTTCTGAGCATGGTGGCTCCGATTGCTCCGACGATGAGCAGTCCACGacgccaccaccaccaactCCGCCAGCAGCTGTTACAGCCAGCAACACGCACAACAATGgccagaacaacaacagtcgTTTGGGTCTAAGACTACCCAAGCTGCATGAGCTGCTGGATAAGGCCAATGAATGGCACAAGGAGAACATTGGCCAGGGCAGCGACTGCTCTTCaaccgccgcagcagcagcagccgcagcagctgcagcagtggCTGGCGGAGATTTGATTGGCAATTTGCTGGGCATAAGCGATCAAGGCATATTGAACAAGCTGCTCTCATCGGCCGATGAGGCGGCCAAGCTGCTGGGCGTGGAGAAGTAA
Protein Sequence
MIATQQQQPQKTTTSNTTTASSAHSDEAQMERHRRDSTTSESSLEHLDLGRTPKKLNSANGAPQPTSTPHTNGNDLSQQARKRKLRQQQQSSLPERSSALLSDEDEPAHSDEISQRQRHKQRRSSARGATASIVMDYSSGDTNSLRKKFRLNRSSASGELSESGFVDASTHSGYLLNASATSSTLASGAQTTALPLAAASSSRGSSHSHSSSGSGASSPHGLSSAESGIGAGDEHMKYLCPICEVVSATPHEFTNHIRCHNYASGDTENFTCRICSKVLSSASSLDRHVLVHTGERPFNCKYCHLTFTTNGNMHRHMRTHKQHQQSGLQQAGGHSTQQQQRRHSHGGKNGSSTAGANAGMAAQQRLNGGAGIESYESDGSCSTDVSSANSQSYSNNNNNNNNSHKANNNNVSNNNNSPSGLKRQQSIDAASSVPKQRRVKTTINNNNIIDADEAEEERLAQQTPSPADNADAKANEADVKPDADFVAAHATPVSTPQSSPLHEAITSTPDVATLLAGANVSPAASPALSLEHSCPVCGTTEFDGLAGLYAHLDAEHTDTLAKCRHCDVVYRTHRQLQMHPCTHRHAGAEMPPLLGASSSPLHQHNEDDEQYDDDDDDEDNGNDDEDQRQQVEAIDEAQHQREDFFRQLYLKNKAANAAAAAAANGPLSPIYNAAGSEIKCEPDSKPDLADIQSILNMTSSSSTSNFLRNFEHTVNTPSSQYSLDGKDEEEAQDAFTSEFRKMKLRGEFPCKLCSSVFPNLRALKGHNRVHLSAVGPAGPFRCNMCPYAVCDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHGKTTRDEVKRSIVYHPAEDASCDETNASPCKTSSRLQQQLYGADAADLDLADLSYRSSTPTLSEQRATPVSQLKNMLLAEPPIQAPNHSKQPLKIQVKSLDQLVDKSQQQQQSQTESTPSTAPIDLSMDVLDLSKKPSLALPAAAELAAALEQQQQQQQQQQMLLAQQQLFGGTDPAAQYMQQILRNLVFQQPTPFPFFGFMPPAANSANLAETLMARMFGGAGATANANMNLSPQAAAPGNAEKAATAAMLPQISPLLAGTADKSNAPLMAARLPHAAAGLTSSVPLPGGPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHVKQQHPQFYAQRQRSGHHVMRGRGAAAAAAAMNSISHLQATAGYRGTAQVQGQGHAGGGGAGTAPISEQVKYAILTQQLKARKDTDLLQQALAHGSSSVTANQLLHFGYGHMNGHGHGHAHAQHGEVQHNGNNNGHNINASVMDDDEPKLVIDEDEDDQGQEHEQNFDEDINDDDDEEELHEEDDDDDDDEQELPEEQKYDYDDEHGLDVTKAAVDEAALIKPAETLPKPIEQLCPRTPSPTPKAGVSNEAAKKVAETILEQAIKAGKTEPLAKPTQTPTAPTTPTNAHTMKTMIAQAESVAKSLKEVASSPFKDESQDLVPVAKLVDNATSNQVSFNNYFRPGDVANHMEQSDEEGLVASGSASESNNSGTEDVPSSSTEPKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNVESAMSVYVPTEDVSEPIPVPKSVEEIEQQQRQREDEERRRKAAEQHAEQLERERRAQQEAQRQLEREREREQQKEQQEHLLKQLAAAAHLNQQMNVAAAAAAAAAVAAVNAAEANATNTSDLPYKCHLCECSFAERLLCLEHIKQHHAQEFTLLLSKGAIETDVLEPTGTTVLGAGADDDDEQTSSSNNAQRGGKYPDYSNRKVICAFCVRRFWSTEDLRRHMRTHSGERPFQCEICLRKFTLKHSMLRHMKKHSGRAYNGANGTGSEHGGSDCSDDEQSTTPPPPTPPAAVTASNTHNNGQNNNSRLGLRLPKLHELLDKANEWHKENIGQGSDCSSTAAAAAAAAAAAVAGGDLIGNLLGISDQGILNKLLSSADEAAKLLGVEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00336195;
90% Identity
-
80% Identity
-