Ccau008316.1
Basic Information
- Insect
- Chymomyza caudatula
- Gene Symbol
- -
- Assembly
- GCA_035041775.1
- Location
- JAWNKW010000141.1:2174263-2177111[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0061 0.47 11.1 2.5 1 23 213 236 213 236 0.94 2 14 0.0048 0.37 11.4 1.4 2 23 265 286 264 286 0.96 3 14 0.013 1 10.1 0.7 1 23 376 399 376 399 0.94 4 14 0.0061 0.47 11.1 0.9 1 19 406 424 406 427 0.92 5 14 1.3 1e+02 3.7 3.7 1 23 436 458 436 459 0.92 6 14 0.00015 0.011 16.2 0.5 1 23 465 488 465 488 0.98 7 14 0.0011 0.082 13.5 3.9 2 23 496 517 495 517 0.97 8 14 0.0024 0.19 12.4 0.1 2 21 544 563 543 564 0.95 9 14 0.032 2.5 8.8 1.1 1 23 614 637 614 637 0.97 10 14 0.26 20 6.0 1.5 2 23 675 697 674 697 0.94 11 14 0.017 1.3 9.7 3.7 2 23 728 750 727 750 0.94 12 14 0.00092 0.071 13.7 0.1 1 23 764 786 764 786 0.96 13 14 0.00047 0.036 14.6 1.0 1 23 792 814 792 814 0.99 14 14 6.5e-06 0.00051 20.4 1.4 1 23 820 842 820 842 0.97
Sequence Information
- Coding Sequence
- ATGAATCTGCCGATATTATGCCGGACTTGCGATGCAAGGGACTGCGACAATTTATACAAACTCGATATGCCCACAAAGCAATATCCAGAGAAAATGCTCTCAGATTTGTTAACAGAATTGACTGAAATTGATgtaaatggATCCCACGCCCAAAAACTTccacaatttttgtgcaacaCCTGCACAAGGAAATTAACGAGTGCTTGTGACTTTGTTCAGCAAGCCCGTAATGCCAACGATATTTTAATGAACCATTTGCTAAATGGCCAGGCTAGTAATCCTTCAAACTGTTTACAAGAGCTGCCAATTGAGATAAGTGCCCAACAGCATATGGAAATCAAAATGGAAACGAAAGACGATGAAGTAGTTAGTGCTATTACCTACGCAGAGCTACCAGAGCTAGCAATACTTCAACAGGCGAACTCTACGGATGTACTAGGTGAAATCGAAGCAATATCACCAGAAGCTCTGAAAATAGAGCGTGATACGGATATATCCCCTACAGGATTAGATGTAACAGATATCCCTAACCAGGATAACGAGGACGATGAtCTGTGGAGTTCACACGACGAGTTGCCATTACAGCAGCGCGCTCGCAAATGGAAGCTAAACAAAAAGCTAAGTTCTAAGAAAAAGCATAATTGTTATGAATGCTCCAGTAGTTTTAGCAGAGCAAACCTTCTAAAACAACATTACGCACGTTCTCATAAATCCAAATCGAGTCTCAACGAGCAGCAAAAAGCCAAGGACATAGATTTAAATCTTTGCAAGCCGCATGGCTATAAGCTTATTGAATGCATGATATGTCAAACCAAATACGATAAAATTTCACAGTTACGACACCACATGGAGCAGCATTCCGATATAGTTAACTTTGACGACCAGCAGAAGCTGAAAGCCAATGAGCTCGCAGAACTGTTGTATCCCCATTTAAAGAATATAACAGAGGATCATCTAAAAACTCTTATCCGTAATGAGCTGAAAGCTGGCGACTACCAACGTTTTTATTCTATAACAAATCAGTGCGGCTACGAAATGGATTTGGCCAGCTCGGAAACTGAAAGCGAAGAGGAATTGGAAACAGACGAACTCGCAGCAAAGCATGAAAcgacacaaaatgcaaaatatttgtgtgaaTTGTGTCGGAACGGATACCCACGCAAATATCAGCTTTATGATCATCAGCGTCTGTCTCACTCATGGTCCGAGGCGCCACATATATGCGGACGCTGTGATACGCGTTTTGTAAGCAGGGACCTGCTACGACATCACAACGAGTCCCAGTGTAAAAATGCACAGAAGCGTTATCTGTGCCGCAAGTGCCCCTTAAGATTTCGCTGGAAACACAACCGTATAGCGCACGTTCGTGATCATCATATTTCAAATCAAACATTCCAGTGCAACGAATGCAATCTCGTCTTTGACAAGAAAAAGTCGCTCGGTTTGCATGTGCGCAGTATTCATGCTGGCGAATCTCGGGTTATTCCTTGCAAATGGTGTAGTCGTAAATTTCATCGTCAAGACTACTTCCTCAAGCATCTCAAGCGTCACGGCATCAAAGAGCACGACATACCATTGGCCGAAACGCATATAGCGGCAACATCTAAATCTAATGGTCTGAAAAACATTACCTGTAAGACATGCAATCTACAATTTGAACGCATCGCCGATTTGCGCGCCCATATGCAGCTAGAACTGAAGTTAGCGCTTTCACTACATCACAATTATGAATCATTCGAGAATTACTCCATAACAAATGATTGCGGGTTTGAGCTACACATCGATGACTCGGAAACAGAAGATGAAAGCACTCCTGTGCCTTATAAAAAAACTTCAACCTATATTTGTGAGCTGTGTCAGGTACAATGTGGGCGCAAGTATGAAATGATACTGCATCAGAACACCATGCATTCCTTTGACAAAATGCCATATAACTGCGAGCTTTGCATTTTCAAATCCGTTTCCAAGaaCATAATGGACCATCATAAAAAAGTACAATGCCATAATAGGCAAAAGAAACAAGTCTGCAGCAAAtgcagttttaaatttatgtggcCTGAAAACCTGGAGAAACATGTGCAGCACCAGCATGGTGGCTGTGAGCAAGAAACGTCTGAAAACGCCGCACAAGAAGCCGACTTTGAACTGAACAAAAAAGATTCTAAAACTGATCCATTGCTCCAATGCCCACACTGTGATCGAACTTATAAACTGACGTGTCGCCTTAACTACCACATACGGGATGTGCACATCAACGGGGACCGCAAGCGCAGAGAGTCCATGAGAAATTATCTATGTTCCTTGTGTGGCCGGGGCACTCAGTCGGCGGCCGGGTTAGCTACGCACATGCGTCGGCACACGGGagaaaaaccatttaaatgtGATATGTGTGAAATGGCGTTTCCTATTCATTCGGAACTGGTGTCGCATAGACGTAAGCATACGGGTGAAAAACCATTCCATTGCACAGTTTGTGGTAAGGGCTTCGCACGTAAGGACAAAGTTAAGAGGCACATGGTAATCCACAGTGTTTTAAAACGCCAAAAATGA
- Protein Sequence
- MNLPILCRTCDARDCDNLYKLDMPTKQYPEKMLSDLLTELTEIDVNGSHAQKLPQFLCNTCTRKLTSACDFVQQARNANDILMNHLLNGQASNPSNCLQELPIEISAQQHMEIKMETKDDEVVSAITYAELPELAILQQANSTDVLGEIEAISPEALKIERDTDISPTGLDVTDIPNQDNEDDDLWSSHDELPLQQRARKWKLNKKLSSKKKHNCYECSSSFSRANLLKQHYARSHKSKSSLNEQQKAKDIDLNLCKPHGYKLIECMICQTKYDKISQLRHHMEQHSDIVNFDDQQKLKANELAELLYPHLKNITEDHLKTLIRNELKAGDYQRFYSITNQCGYEMDLASSETESEEELETDELAAKHETTQNAKYLCELCRNGYPRKYQLYDHQRLSHSWSEAPHICGRCDTRFVSRDLLRHHNESQCKNAQKRYLCRKCPLRFRWKHNRIAHVRDHHISNQTFQCNECNLVFDKKKSLGLHVRSIHAGESRVIPCKWCSRKFHRQDYFLKHLKRHGIKEHDIPLAETHIAATSKSNGLKNITCKTCNLQFERIADLRAHMQLELKLALSLHHNYESFENYSITNDCGFELHIDDSETEDESTPVPYKKTSTYICELCQVQCGRKYEMILHQNTMHSFDKMPYNCELCIFKSVSKNIMDHHKKVQCHNRQKKQVCSKCSFKFMWPENLEKHVQHQHGGCEQETSENAAQEADFELNKKDSKTDPLLQCPHCDRTYKLTCRLNYHIRDVHINGDRKRRESMRNYLCSLCGRGTQSAAGLATHMRRHTGEKPFKCDMCEMAFPIHSELVSHRRKHTGEKPFHCTVCGKGFARKDKVKRHMVIHSVLKRQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -