Ccau002077.1
Basic Information
- Insect
- Chymomyza caudatula
- Gene Symbol
- -
- Assembly
- GCA_035041775.1
- Location
- JAWNKW010000034.1:1078468-1089299[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0092 0.72 10.5 0.6 1 23 353 375 353 375 0.97 2 23 0.00054 0.042 14.4 3.8 1 23 630 652 630 652 0.99 3 23 5.7 4.4e+02 1.7 0.9 1 23 658 681 658 681 0.90 4 23 0.91 70 4.3 3.6 1 23 705 728 705 728 0.97 5 23 0.0047 0.36 11.5 2.2 3 23 980 1000 979 1000 0.91 6 23 0.017 1.3 9.7 0.7 1 23 1006 1029 1006 1029 0.96 7 23 5.9 4.6e+02 1.7 1.9 3 23 1067 1087 1065 1088 0.69 8 23 0.0069 0.54 10.9 0.8 1 23 1109 1132 1109 1132 0.97 9 23 0.019 1.5 9.5 1.8 1 23 1328 1351 1328 1351 0.97 10 23 0.044 3.4 8.4 3.0 1 23 1366 1388 1366 1388 0.98 11 23 4.3e-05 0.0033 17.9 0.5 1 23 1393 1415 1393 1415 0.98 12 23 0.00039 0.03 14.9 4.6 1 23 1421 1446 1421 1446 0.95 13 23 0.0017 0.13 12.8 1.1 1 23 1451 1475 1451 1475 0.96 14 23 0.0028 0.22 12.2 2.1 1 23 1481 1504 1481 1505 0.96 15 23 0.15 12 6.7 2.1 2 23 1855 1877 1854 1877 0.95 16 23 0.22 17 6.2 0.5 3 23 1935 1956 1933 1956 0.94 17 23 0.00035 0.027 15.0 1.9 1 21 1975 1995 1975 1996 0.96 18 23 0.17 13 6.5 1.8 2 23 2004 2026 2003 2026 0.95 19 23 6.9e-06 0.00054 20.4 4.2 1 23 2032 2054 2032 2054 0.98 20 23 0.0022 0.17 12.5 0.2 1 23 2059 2082 2059 2082 0.96 21 23 0.99 77 4.1 0.3 2 23 2089 2111 2088 2111 0.95 22 23 0.15 11 6.7 0.9 2 23 2117 2138 2116 2138 0.95 23 23 0.0024 0.19 12.4 1.1 1 23 2143 2166 2143 2166 0.97
Sequence Information
- Coding Sequence
- ATGGATGCATTTACCGAATGGTATGCGTttctaaaacatttaaaattgcgTCACGGCGAATCACACAAGGACACATTTCAACAAcataatgaaatttatgagGAGGACGACGACGAAATTCAAGCTGAAGTTGAAGTAGAATTGGCGAATCTCGAAAAATCTAACCAAAATATTGATGGCTCCGTGAGCTCTGAAAACGAATTCAGTCTAATGTTCGATAACGATGGCAACGAAGATAATTTTGACTGTTCCAGCAGTAGTTGTAAAAAGGACTACGATGAAATGGATATTGCGGAAGCTGGAAGCATTACAAAAGAAGTggtcataaataataataatgcaattaataaaaagTATGATGTGCTGAACAATATCAAACGGCCTTTTTATAGCCTAAGGCGCACCCATCCTCCGCTTATGTTGCACTTTATTGAGTTGCTAAAAGAACACGAGTTTCAGTGGCATCCAAAGTACAAGAACGCTGCTTTCAAAACAAACCGATTGAGTAGCGCTGGGATTATAAGCGAAAAATTGGAAGAACGCTGGAATGTTTCGTTGGACCCAAAATGCATATGCAAAAAGATGCCGCCCAGAAAGATTAAAGCCAATGGCGAAATTGACTATAAATTGGCGTGTCGCTGTTGCCTCAAATCCGACGCGGAGTTTTACAAGCTAGATTCTCTAGTGGTGGCGCGCAGTATTGGCCACGCTAGTTGTGATGCGTTAGCCAGTAGTGAAAAAATACCATTATTGCGTTGTCTGCTTTTTTGCATACGCGCTGAAAATGTTCCGGAGCTGCCGCAATACATTTGTCTTGCGTGCAGCAAGAGTTTACAAATTGCATatcattttatgcaaaatgcattGCGCTCACATGAGATTCTGTGCCAGAAGCTATGTCCCGATAAGTCTAAAATTCAACGTGCAGTGCGTTTAAATGGTCAGATAAGCCACAACATTGGGAATAATAGCAGCGAAAAGGGCCGAACTCTGCAGCAGCATGTGCCGTACGACAATGATGAGGCAACGCCAAAGCCGCGCAAAACTACAGTGCGTCATGAATGTAAAGTATGCGGCGCTATTATATATAATCGTTTTGAGCTTAAGGAGCATCTACGTCTGCATACAGATACAATTGCACATAGTTGCACACTGTGTAATTTTGTTACACTAAAGCGGTGCCAATTAAATCAGCACTACAGAAAGATTCACAACTTAACAGAAGCGCAATGTGAGCAACAACTAAAGGTATCCATAAAATCTACAACACCATCCGCTGCATCCCCCATAAAGACATCAACCAAAACTACCAAGACAGATGTTTCAGGGAGCAAATTTGACATATCAGCTAATAGCAGCATTGGCGAGAAACCTGCAGTAGTGTGCACACTAGAAGATATGGAGTTGTTAATTCCAACCGTCTTGAGACCTGAAGACTATGAAACCCCCCACATAGATGAGCAACATTTGCGTGACTTAGAAAAACAATTGACGGAAAGCATAGAAGCAGATGGTGCAGCCGCAAAGTTGAGTGAATCTTTTGGCACACTAGACTTGCCGCAGCTAGTTGATACAGCTACGGCAAGCAATGATCAAAACATCTATGAAGGTGGTAGCAATTTAACAATAGGCACAGAGTTTTTAGTAATGCCTGATGGTTCGCTGCAACAAGTTAATGGACACGGTGTTGTTATAGAGTACATAAATGCCACGGAGGGacagagcaaaaacaaaaacgaggTTGATTTGCCTTTATTGGGCagtacaacagcaacatctgATAACGGAATTGTGCCAATGGATATTGATGTTAACGAGCTCATTGTTGAAGAAGTGCAGCCGAGTACAAAAAAGACAATGAGAGGTACACCACGCGCCGTCGTACGGTACAAATGCGAACAGTGTCCCAAAACCTTTGCAACATCGTCACGTCTCAAATGCCATCAGTTAACCCATAGCAATTTGCCCAAATTTTATTGTGATCAATGCGCCTACTACTCGCTGCGCAGCTCGGAACTAATGCAACACTACAAGGCATCGCACAACGTTGAGCCAGCAAGTGTACAAATAGATGGTGAAAAAAAACGTGAGCCGGTAGATGAAAGCAGAATTTACTCCTGCGATATGTGCCTTTTTGAGACAAAAAGCTGTGGTCAGCTGCGTTTGCATTACAACAGGAAGCATTTGGTTAATCCCACAGAGGTGCAGCTGCGCCCTAGTTGGTgcGGAGAAAATCCGGATTCCGCTGGCAACTCAGCACAGCCAGATGCGAACAGTGTCAAGCAGCAACCAGTGCTAGAGTTTCCGCTGGGCATTCAATATCCACGGACGAAAAATGAATCAACAAGTATGGCAAGCTCAGAGCAGCTGGCAGCAAAAGTGGCTACAAGTATGGAGAATACAAGGCAACTCAATGCGACAACCACATTGATTTGCTCGGATATGCATACTGCTGTGGCAGAGGTGCCACCAGCTTTGGTCTCAGCTGCAACAAGCAgcgaaaatacattttcaatatttccaCCAATCTCAGCCAACTTGGCAAGCGGCGGAGAGCAAATGCCAACGCTGCCAACACCTACAGGCAATGTTGCTGTGTCTATCATCGGCGATATGCAGGATTTTATAGATGACACTGATGTGGCTGCCATATGCACTATCCCCGCTGATGGTCTGCCTGTGGTTGACGGGGATGACATTGTCATtgataacaataatattaacTTGGACTTTGACGCTGAAAATCTCTTTGAAGACttcgacgacgacgaggatGACGCGGAGGccgaagaggaagaagaggacGATGATGCAgataatgatgatgagaatgataataatgatgcCGCAATTGATCAAAACTTGTTGTTAACTAGTGATGATGACGATGTGGACGACTTTGATGATGAACAATCTAGACATTTACAGAAGCCGTATTGTATCTATTGTAACAAAAAGTTTACCAGTCAGTACAAGTTCGAGAATCACATGTTTTTGCATCGAGGCTTAGCACCATACCGCTGCGAGCTCTGCaccaatatttataataaaaaacggGCGCTTATACGGCATTACAAGGCCGTACATAAGCGCATGCCAACCCGCGATATGGTGCAGGCCAAGGGCGATAAAATATCTCTAAATCGAACGAATATCGAAAAGTTGCACCTGGACAAAGATAAAGcGCCCGCTCTAATGTGCGCGAAGTGTCCTTTCGAATGCGAGCTAGAAACTGATATGCGCAAACATTTGAATGCTCATCATGGAATTAATGATGGCGTTACTTGTCATGCCAATGAGGTTTTCATTATACGCAAGCTGCCTTTTGAGTGCCCACGCTGCATACGCTCATTTGCGGCGAAACGTACGCTTACACGCCATTTGCAGCGCAGTCATCTAGTGGATACAATAATCGAGCTCCAATCTCCTCAAACAACCACAAGCTCCGCGACCACAACCACAACTTCCACCCCGACCACAACCTTACCAAACGCTAATGAAATGTTGTCAAACAAGGTGGTGGCTGAGCAACTTGTGGCAGGCGAATGCGCACGAGCAAGCGTTCTAACAAAGGCGCTGCAACGATATCAATATAAATTGCATGACACAACTGAGACGActatgacgacgacgacaacaagcGCTGAATTGACAACTAGTCTGCACATCAGTACTAACAGCATTGAACCTACAATAACGCCATTGACCACAAACACAGCATCGACGCTTTTTCCCTCGCCCACATTCCATTCGTTTGATTTCGATTATTATGATTTAATGGATGAAACGCATGCCGCTGTTCAGCATCTAGTCAAACGCGAGCCAGAGGAGCACAATAGCTATACGGATACGGACACTTTGACCACTTCGACCAATTACAGTAATGTGCTGCGAAATGATAAGTTGCTGCCCACGGCTCTGTTGCGTCAAGACACTTCACCGGTGAAGGATTTGCGCAGTTATTTGCCACGCACGCCCATCTATGTCTGCCGGCAATGCAATTACACTTGTGATGAACTTAGCAAGCTAAACCAGCATCAAGCAATGGACCATACCAATAATGGGGACACCACCTTGCCGCGTCGTAACTATGACTTCAAGTGCAGCATCTGTAATAGTACCTATCGAACAATTACACTGCTGAAATTCCATATGAAGCGTCATGCCAAGCGTAATTACAAGTGCGATTTATGTCCCAAGACATTTGTTATGCGGCCAGAGCTTACCAAGCACAGGGTTACACACAGCAAAGAGACACCCTTTAAATGCAACGTTGAGGGCTGTCAAAAGGCCTTTAACTATAAGCATCATCTCAAGCGGCACTACATGGCTACGCATATGCGCAAGCGTTATACTTGTTCCGTACCTGATTGTGGCAGAGAAATGACCTCAAGCTCGCAGCTTACGCAGCACATGCATTTTCATAAGGGCACGCATGCTTACAAATGTCCCCGGTGTACACGTGCTTATACGAGACGCAAGCCctTACGCTTGCACGCAATGCGTGACCATCACTTGCAGTTAAGCGAGGATGATCTGGCGGACATATATCGCGCCAATGTGGGCTATACAAACCCTCATGACTTAAGAGTATTCACGCCGCCGCCAGGTAATAATGTTAGGCAGTTGCAGACCAACAAATCCAAATGTCGCGCTTGTCTTTCAACGGATCGTACCACGCTAAAAATTGATGCATACGTGCCAGACTTACAACACGCTCGTACCTATGCTCAAAGTTTTCGGCAATGCACAGGCCTGGCAGTGCACGTCAATAGTCCCGGGGGCTACAAATGGCCCATGCAGCTTTGTACACGTTGCTGCCGTGCATTAGAGGTGGCCATGCATTTTGTGGAAATGGCTTTGGCGTCGGATATAAAACTGCACGCTGAGGCACAGAAAGTGAAACCACCACTGGCCAAACCAGAGTCGGAGCTAAAGCGTAAAGCCAGCAATGAACTGCTTCAATGGAACCAATTCAGTCAGGAATTTGAGCAGTTTGTGGAGAGCTACGATGGTGCAACGGCGCCTATTGAGGAGAATGTGCTGTATATGCGAGGTGCAAAGATACCACGCCTTGATAATGATGCAACGTTTTCAAATAAGCCGCCCAAGGAAGACGAAATCATTTTATTCGATGTTAAATATGATACAAACAATCTCGATGAGGAGGATGAGAACGATGGTTCCGATGCTAAAAACAGCGAAACCTTTTTTGATAATAGTATTATGAATGCGAACAATAATGCCACAAACGGTAGCCAGAGCAgtgaaaacaataacaattataattttaataacaagAATGGCGATTTGTCGGATCTGCCAGATGTAGAATCTGATCTAATACAACGCGCGCTGTTCATGACGCTCAACGATGAAGTCAATGCTGGTGAAACGACAAAAGAAGTTGAAGCAATTGAATCTATCAAGGCCACGCTGGTTAATTCCTCAAAAAGCTCTGGTACCGAGATGACTCACTCTGGTTTGAAAGCTAACGTGTCCACCACCCAGTCGACTACAACAAACACTTCTAATATGGAGAATACCAATGTGCCTGTTCTCTCATGCAGCTTCTGCAAATTTACATACACTGAGGCTAAGCAAATGCGCACGCATTATATGCGTATGCATAACTATGATGCCTCTGAGGATGATATTATTGGTTTgacaaaaaATCAAACCTTTAAATGCCGGCCCTGCAATACCTTTGAGACTAAAGTAAGAGCAGAAATGCAAAAGCATCTTATTGAGCATCATAAAATTGATGGTGATTTTGAAATGTACTGTTATGAACAGCAGAACTGCCCGGCATGTGCGCGTGTTTTCAAAGATCAACGTTCGGCGCGCACACACTATACTCGCATGCACTCTACAACTTCAAACAGCCCCTCGATGTTTAACACAAACAATAGTAGTGAGCAGCACGTTTGCAGTACTTGCCAGAAAGTGTTTAATCTTAAGTCCAGCCTGCAAAGCCATCAACGATTTTGTCAGAGAACTCAACCCGTCCAGTGTAATTTCTGCAAGGAACAATTCAGCAGCATGCGCAAATACGAACTTCATCTACAGCAGAAACATGCCGTCGATACCGTGCACGAGTGCGAAATATGTCACAAGAGCTTTAAGAATGCCGATTCGTTGACTATACATCGCAAGCGTCACTCGGAGCGTCATTTTCAATGCGACAAATGTGAGCTTAACTATGTAAATGCGGCCGAGCTGAAGGTCCACTATGAACGCACTCATGTGCATGATGAACAGGTTACCTGCGGTAGCTGTGGCAGCCAGTTTCAGAATTTTGCTTTACTGCGTGAGCACGAGCAGCGCAATCATCAGCAAAAGGTTTGGCGCTGTGACAATTGCAACTTTGAAACTTCATCGCGTGCGCGTCTAAGGCAACATCAATACGAGCACACTGGGTATCCTTACAAGTGCCAGGAGTGCCAGGAGGAGTTTGCTGATCGCAGCAAAATACGTCAACattccaaaaaaatacatGCCGTTGAGCTAAGCGACGAGCAGCTATCGGAAATGTTTCGCGAACGCATTGGCTATATAAATCGTCATGATGCCTTCTCAAAGAGCAACAACTTGCTGGAAATTCCGGGTTTCAGTGAGGATTGCTTTAAAGAGCTGAAGAGCCTGGGTGTCGACTATGATGGTATTACACAAGATCTCTTCTCTAATAGCACGCTAGATTCTTTGCTTGAATTGATACCTTAA
- Protein Sequence
- MDAFTEWYAFLKHLKLRHGESHKDTFQQHNEIYEEDDDEIQAEVEVELANLEKSNQNIDGSVSSENEFSLMFDNDGNEDNFDCSSSSCKKDYDEMDIAEAGSITKEVVINNNNAINKKYDVLNNIKRPFYSLRRTHPPLMLHFIELLKEHEFQWHPKYKNAAFKTNRLSSAGIISEKLEERWNVSLDPKCICKKMPPRKIKANGEIDYKLACRCCLKSDAEFYKLDSLVVARSIGHASCDALASSEKIPLLRCLLFCIRAENVPELPQYICLACSKSLQIAYHFMQNALRSHEILCQKLCPDKSKIQRAVRLNGQISHNIGNNSSEKGRTLQQHVPYDNDEATPKPRKTTVRHECKVCGAIIYNRFELKEHLRLHTDTIAHSCTLCNFVTLKRCQLNQHYRKIHNLTEAQCEQQLKVSIKSTTPSAASPIKTSTKTTKTDVSGSKFDISANSSIGEKPAVVCTLEDMELLIPTVLRPEDYETPHIDEQHLRDLEKQLTESIEADGAAAKLSESFGTLDLPQLVDTATASNDQNIYEGGSNLTIGTEFLVMPDGSLQQVNGHGVVIEYINATEGQSKNKNEVDLPLLGSTTATSDNGIVPMDIDVNELIVEEVQPSTKKTMRGTPRAVVRYKCEQCPKTFATSSRLKCHQLTHSNLPKFYCDQCAYYSLRSSELMQHYKASHNVEPASVQIDGEKKREPVDESRIYSCDMCLFETKSCGQLRLHYNRKHLVNPTEVQLRPSWCGENPDSAGNSAQPDANSVKQQPVLEFPLGIQYPRTKNESTSMASSEQLAAKVATSMENTRQLNATTTLICSDMHTAVAEVPPALVSAATSSENTFSIFPPISANLASGGEQMPTLPTPTGNVAVSIIGDMQDFIDDTDVAAICTIPADGLPVVDGDDIVIDNNNINLDFDAENLFEDFDDDEDDAEAEEEEEDDDADNDDENDNNDAAIDQNLLLTSDDDDVDDFDDEQSRHLQKPYCIYCNKKFTSQYKFENHMFLHRGLAPYRCELCTNIYNKKRALIRHYKAVHKRMPTRDMVQAKGDKISLNRTNIEKLHLDKDKAPALMCAKCPFECELETDMRKHLNAHHGINDGVTCHANEVFIIRKLPFECPRCIRSFAAKRTLTRHLQRSHLVDTIIELQSPQTTTSSATTTTTSTPTTTLPNANEMLSNKVVAEQLVAGECARASVLTKALQRYQYKLHDTTETTMTTTTTSAELTTSLHISTNSIEPTITPLTTNTASTLFPSPTFHSFDFDYYDLMDETHAAVQHLVKREPEEHNSYTDTDTLTTSTNYSNVLRNDKLLPTALLRQDTSPVKDLRSYLPRTPIYVCRQCNYTCDELSKLNQHQAMDHTNNGDTTLPRRNYDFKCSICNSTYRTITLLKFHMKRHAKRNYKCDLCPKTFVMRPELTKHRVTHSKETPFKCNVEGCQKAFNYKHHLKRHYMATHMRKRYTCSVPDCGREMTSSSQLTQHMHFHKGTHAYKCPRCTRAYTRRKPLRLHAMRDHHLQLSEDDLADIYRANVGYTNPHDLRVFTPPPGNNVRQLQTNKSKCRACLSTDRTTLKIDAYVPDLQHARTYAQSFRQCTGLAVHVNSPGGYKWPMQLCTRCCRALEVAMHFVEMALASDIKLHAEAQKVKPPLAKPESELKRKASNELLQWNQFSQEFEQFVESYDGATAPIEENVLYMRGAKIPRLDNDATFSNKPPKEDEIILFDVKYDTNNLDEEDENDGSDAKNSETFFDNSIMNANNNATNGSQSSENNNNYNFNNKNGDLSDLPDVESDLIQRALFMTLNDEVNAGETTKEVEAIESIKATLVNSSKSSGTEMTHSGLKANVSTTQSTTTNTSNMENTNVPVLSCSFCKFTYTEAKQMRTHYMRMHNYDASEDDIIGLTKNQTFKCRPCNTFETKVRAEMQKHLIEHHKIDGDFEMYCYEQQNCPACARVFKDQRSARTHYTRMHSTTSNSPSMFNTNNSSEQHVCSTCQKVFNLKSSLQSHQRFCQRTQPVQCNFCKEQFSSMRKYELHLQQKHAVDTVHECEICHKSFKNADSLTIHRKRHSERHFQCDKCELNYVNAAELKVHYERTHVHDEQVTCGSCGSQFQNFALLREHEQRNHQQKVWRCDNCNFETSSRARLRQHQYEHTGYPYKCQECQEEFADRSKIRQHSKKIHAVELSDEQLSEMFRERIGYINRHDAFSKSNNLLEIPGFSEDCFKELKSLGVDYDGITQDLFSNSTLDSLLELIP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -