Basic Information

Insect: Chymomyza caudatula
Gene Symbol: Znf574
Assembly: GCA_035041775.1
Location: JAWNKW010000030.1:2041229-2043351[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.11 8.2 7.2 0.9 2 23 326 348 325 348 0.95

2 10 0.053 4.1 8.1 0.1 6 23 358 375 358 375 0.98

3 10 0.00053 0.041 14.4 0.3 1 23 381 403 381 403 0.96

4 10 6.6e-05 0.0051 17.3 0.3 1 23 416 439 416 439 0.95

5 10 0.00013 0.0099 16.4 0.7 1 23 447 470 447 470 0.97

6 10 2.3e-05 0.0018 18.7 1.0 3 23 478 499 476 499 0.92

7 10 0.042 3.3 8.4 0.3 2 23 511 533 510 533 0.95

8 10 6.7e-05 0.0052 17.3 4.1 1 23 540 563 540 563 0.93

9 10 1.5e-06 0.00012 22.4 1.3 1 23 569 591 569 591 0.98

10 10 7e-05 0.0054 17.2 1.3 1 23 597 620 597 620 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.11	8.2	7.2	0.9	2	23	326	348	325	348	0.95
2	10	0.053	4.1	8.1	0.1	6	23	358	375	358	375	0.98
3	10	0.00053	0.041	14.4	0.3	1	23	381	403	381	403	0.96
4	10	6.6e-05	0.0051	17.3	0.3	1	23	416	439	416	439	0.95
5	10	0.00013	0.0099	16.4	0.7	1	23	447	470	447	470	0.97
6	10	2.3e-05	0.0018	18.7	1.0	3	23	478	499	476	499	0.92
7	10	0.042	3.3	8.4	0.3	2	23	511	533	510	533	0.95
8	10	6.7e-05	0.0052	17.3	4.1	1	23	540	563	540	563	0.93
9	10	1.5e-06	0.00012	22.4	1.3	1	23	569	591	569	591	0.98
10	10	7e-05	0.0054	17.2	1.3	1	23	597	620	597	620	0.97

Sequence Information

Coding Sequence: ATGTCCGCACTGTGTGTTCTCTGCCTGGCTAACTCAGATTCAGTTATAGCTATATTTTCCGAAGAAGGTTCTCGTCTTAATATTTGtgaaacaataaacaaacatttttggctagAGTTGAACAGTACTAAGGCCAAAAATGACATATGCTGCGATTGCTGGCAAAATGTCCGTCGATTCAATGAGTTCTACCAGCGCGTCTATCATATTCATGAGCAACGACGTTTTTTCGTCCAAAATGTTCCTATCGAATTCTTTGGAGAAATAACAAATCCACTTTCAAAGCCTGCTGAATTGGTAGATGCTTTATCGGAATGTATTATTTCCGCCAACGAAGTAAAAGTTGAAGTATCTGAACTGGAACTGCTGCCTAAAGTTGAGGTTTTCGAGGACCCAGTAAATACTCAGATCATACTTGCCGAAAAGCGAACCAATTTCTTTCAAGAAGCTTATGTCTCAAACAAAAAACGGATTAAAAACGAGAAAGCAATAAATGATCATGACTCAGACGAGGATATTCCACTAGCAGACTACCTAAACACCGAATTAAAGACTGAATCTATCAACCTATCAACACCAATGTTAGAAGCAAGACGTAGGCGCTCACTACGAACACGTATGGTAAAAGCAACCACGccaacacaaaatataaaaaatgaatttgagactgaaattgaaattgatcaAGATGACCAAAATGATCATGATTTTATAACCGCCAATACAGCAGGCACAGATGACAGCGCAAGTTCTAGTGTAGGCTCAAATGTGGACACCGACGACAGTTTACCAGATATTGAGCCCGAAGAGCGTTATGCCGAAATACCCAAGCGTGTTGTGGTCAAACCAAAAAAGTATCGTAAGCGTCCAAAGCCATTGGTGCCGCCTGTGCGCAGAAGCCGTGATGAAACCGAACGTCGCAAGTCCCAGCAGCTCGAATACGAtgaaattattgtaaaattctttaaaaagctGCCTTGCCACATATGCAATTTGTTGGTACAAAACTTTGGTGATATGCGCCGGCATCAGCGTCTCACGCACAAACTGGACCCGGGCTTTATGATGTGCTGTGGGCGTAAATTTATGCAACGTAGGTCGCTGGCGGAGCATGTTCTCGTTCACTGGAATCCAGAGCATTTCAAATGCAAGCAATGTGAGCGGATTTTTCAGGACTCTCGCGCGCTCGAAATACATGAACAAGGACACACAAACCCACAAGTTCAACTCAAATCTAGGCAAATGTATCAGTGCGAAAAATGCCCAAAGAGTTATACAACAAAGGCCGCTGTTGAATATCATATTGTTTCAAAGCATGTGCCCAAGTCGGATTTTAAGTTTACATGTCCAGAATGTAACAAAAGAGTTCCAACCGAGCGGAAATTGAAGGAGCACTTGAAGTACATGCATGATCCGGAGACAGCTATAATATGCGATAAGTGCGGCAAAACGTTGCGTTCACAAGCGAATCTCAAAAAGCACCATGAGTTAGAACATTCTGATGAACCGCGACCCAAGCCAGATCCAGTGCAGTGTGAAATTTGTGGCACTTGGTTGCGTCATCTTTATGGattaaagcagcatttaagcAGTGTGCATGAGCCCCCTGGAGGGGATCATCGCTGTCCTATCTGCAATAAAACTTCTACAAATTCACGCGCTCTTAAACGGCATATCTATCACAATCATGAATGTGAACGAAAGTTTAAATGCACCATGTGCGAAAAGGCATTTAAGAGGCCGCAGGATTTGAGAGAACATACTTCCACGCACACCGGTGAAGTACTCTATACGTGCCCCAATTGCCCAATGACATTCTTTTCCAATGCCAACATGTATAAGCACCGTCAGCGCTTACATAGAGCCGAGTGGGAGGCGGACCGTAAGAAGCCCCTGCCTCCTAATCATGGAAAAAAGactaataaaaatcaataa
Protein Sequence: MSALCVLCLANSDSVIAIFSEEGSRLNICETINKHFWLELNSTKAKNDICCDCWQNVRRFNEFYQRVYHIHEQRRFFVQNVPIEFFGEITNPLSKPAELVDALSECIISANEVKVEVSELELLPKVEVFEDPVNTQIILAEKRTNFFQEAYVSNKKRIKNEKAINDHDSDEDIPLADYLNTELKTESINLSTPMLEARRRRSLRTRMVKATTPTQNIKNEFETEIEIDQDDQNDHDFITANTAGTDDSASSSVGSNVDTDDSLPDIEPEERYAEIPKRVVVKPKKYRKRPKPLVPPVRRSRDETERRKSQQLEYDEIIVKFFKKLPCHICNLLVQNFGDMRRHQRLTHKLDPGFMMCCGRKFMQRRSLAEHVLVHWNPEHFKCKQCERIFQDSRALEIHEQGHTNPQVQLKSRQMYQCEKCPKSYTTKAAVEYHIVSKHVPKSDFKFTCPECNKRVPTERKLKEHLKYMHDPETAIICDKCGKTLRSQANLKKHHELEHSDEPRPKPDPVQCEICGTWLRHLYGLKQHLSSVHEPPGGDHRCPICNKTSTNSRALKRHIYHNHECERKFKCTMCEKAFKRPQDLREHTSTHTGEVLYTCPNCPMTFFSNANMYKHRQRLHRAEWEADRKKPLPPNHGKKTNKNQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00338593;
90% Identity: -
80% Identity: -