Ccau008311.1
Basic Information
- Insect
- Chymomyza caudatula
- Gene Symbol
- -
- Assembly
- GCA_035041775.1
- Location
- JAWNKW010000141.1:2154086-2157552[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.021 1.6 9.4 0.5 2 23 292 313 291 313 0.96 2 15 0.012 0.94 10.2 6.4 1 23 397 420 397 420 0.97 3 15 0.026 2 9.1 1.3 1 20 427 446 427 448 0.92 4 15 0.0053 0.41 11.3 2.1 1 23 457 479 457 479 0.98 5 15 0.016 1.2 9.8 0.1 5 23 490 509 486 509 0.88 6 15 0.00083 0.065 13.8 1.4 2 23 517 538 516 538 0.96 7 15 0.008 0.62 10.7 0.0 2 21 565 584 564 585 0.94 8 15 0.025 2 9.2 3.5 1 23 630 653 630 653 0.98 9 15 0.002 0.16 12.6 0.2 1 23 690 713 690 713 0.95 10 15 0.00092 0.071 13.7 1.9 2 23 733 755 732 755 0.96 11 15 0.00076 0.059 13.9 0.2 1 23 769 791 769 791 0.95 12 15 0.00068 0.053 14.1 1.1 1 23 797 819 797 819 0.99 13 15 1.1e-07 8.6e-06 26.0 4.4 1 23 825 847 825 847 0.98 14 15 8.7e-05 0.0067 16.9 7.2 1 23 853 875 853 875 0.98 15 15 8.7e-05 0.0068 16.9 0.8 1 23 881 905 881 905 0.91
Sequence Information
- Coding Sequence
- atgaaaaatattcaatttcctATGTCATGCCGTACTTGCGATACAGAGCATGCCGAAAAGTTATACAAGCTCACAACGCGCTCAAAAAACTTCCCGGAAAGAATGCTTTCAGAATTGCTAAGTGATCTAACCAAAATtgaaTTAGGTGAAGTGTCCCCTAGCAAGCTTCCTCAAACAATATGTGGCAACTGCTGGCACAAACTGAACAACGCATACGATTTTTTAGTACAAGCTCGTGCCGCAAATGAACGCATCATGGGATCCCGGCTAAAAGAAGAACTAAACGGTAACGctgtaaatgatttttttaaaaaagaacacaAGCAGCTGTGCAATGAAAACACATTTCAAAACGAAACTGATAATATTCAATGCAATACCTCAAGTACCatgaaactttttgaaattttaaacgcAGACATTGAGGAATATGAAGAAAGCACACATGAAGCTGACCACCTATATAGTAATAACATAGATCCTCTAGTTGTGGATATATCGGATAATATAAATCCTGTGGTTGGAAATGTTAATACTCACGAATATAGTCAATCAAGCTTTAATCAGCAAATGCATCAATCAAACATCAACGGCTCGCAAAAAACAACAGGAATTTTAGATCCTCTACTGGAACATATAAATAGTCATGCACAGGATAAATCAGCATTGAACCAATATCATCACTTAAATACTTCCACTACTATAAATGCCATACAAATCGCCACCGAAAATTTAGATCCTTATGTGTTGGACATAAGTGAGCTCGAACAGATTCAATCAACGTTTAAGCAATGCGTAAAAAATCTTTGCAAACGAAAAGGTGTTCTTGAAGTTGATATTAACATGTGTAAACCTAACGGATTTAAACTTATACAGTGTATGATTTGTAAGAGTACTTACAACAAAATCTCGGAGTTACGCAGTCACCTAAACGATCATCCAGTCATCAGTAGCACAGAAGAAAAAACCATAGATCCCAGCGAGCTAATTAAATTGCTCTACCCAGATTTAAAACAACTAAGAGAGCTTCAACTGTATGAGCGTATAGCTAAAGACTTGACTGCTGGAAACTTTACCCGCTTCTACTCTATAACTAACCAATGCGGCTATGAATTGGATTTATATAGTTCCGAGACAGAAACCGAAACAGAACAGGAAAATGAAGCAACAGTAAAGttcaaaagaaattatatttgtGAACTTTGTCACAGAAACTGTGAACGCAAGCATCAGCTTTATGAGCATCAGCGTTTGGAACACACTTGGAGCGAGGCTGTGCATATTTGCAGCCGCTGTAATGCTCGTTTTGTAAGTCGCCAGCTGCTAAACCATCATTACGTTACTCAGTGTAAGAATACCTTGAAACGTTATATGTGTCGCTACTGTCCATTGCGTTTTTACTGGAAGGATAACTTTAAAGCTCATACTAAGAGTCACAAAGATATGaatCAAAACTTTGAATGCATCGCCTGTGGAAGAGTTTTTGCTGAGCAAAAGTCTCTAAGCGTCCATTTGCTCAGTGTACATGCCGACGAAGCCCAGTTGATACCATGTTTTTGGTGCAGTCGCAAGTTTTATCGCCGCGACTATATGATCAAACATCTAAAACGTCATGGTCTTAGAGAGCAGGACCTACCATTAGCAGAAACGCTCCTAGCCGCCACATCGAAACCAAatggtttaaaaattattacatGCAAGATTTGCGACatacaatttgaaaacatCATAGAATTGCGTGTTCACATACAGGTAGAACTGAAGTTGGCGTGCTCCATGCATTTCCCTTATGAATCTAGGCACAACTACTCGATAACAAATGATCTTGGTTTTGAACTGGAACTGGATGATTCGGAAACGGAGGATGAAATTGCAATGCCAACTCCTTATATTTGTGATATATGCCACATTCAATGTCAGCGCAAGTTTGAAATAATGCAGCACCAACGCACTGTGCATCGATTTGATAAATTACCTTATCAATGTGAGCATTGTATTTTCAAATGTGTCTCTAAGAACGTAATGGGTCACCATAAGCTAGGACAATGCCTTAATGAAGACAAGCAATATGTATGCCCAAAGTGcagttataaatttatgtggcCCGAGAATCTGCAGCAGCATATATTATTGCAGCATGGAGGATACGAGGAGCTAACCAAAAAGCCAACGATTTCTAAAACTAGTAAGGCTCTGCAGTGCCCGCACTGTGATCGCACATATCAATTGCGAACTCGATTAAATAATCACATAAGGAATATACATCTTAACAATGATTGCAAGCGCAAACCATCCACTACAAAATTTCTCTGCTCCCTGTGTGGAAAGGAAATGCCGTCCAGAGCAAGTTTGGTAACACACATGCGACGCCATACGGGTGAAAAACCCTTTAAATGTGATCTATGTAACATGGCCTTTCCACGACACGCTGAAATGCTATATCACCGTCGTATACATACTGGTGAGAAGCCTTTTGAGTGCACCATCTGTGGAAAGAGCTTTGCACATTCACACAAACTCACTCGTCATATGCTTACACACAGTGGTCTCAAACCACATAAATGCACACATTGCAACAAGAGTTACAGGCAGTCTAAGGATTTAAATCTGCATTTAAAGCAACACACAGGTGGATTTTCATTTAGATGTGAAATTTGTGATGAAAGTTTTATGCTAAGCAGCACATTGGAGAAGCACAGAATGATGCGGCGCCACTTTGTAGAGTCTGgctaa
- Protein Sequence
- MKNIQFPMSCRTCDTEHAEKLYKLTTRSKNFPERMLSELLSDLTKIELGEVSPSKLPQTICGNCWHKLNNAYDFLVQARAANERIMGSRLKEELNGNAVNDFFKKEHKQLCNENTFQNETDNIQCNTSSTMKLFEILNADIEEYEESTHEADHLYSNNIDPLVVDISDNINPVVGNVNTHEYSQSSFNQQMHQSNINGSQKTTGILDPLLEHINSHAQDKSALNQYHHLNTSTTINAIQIATENLDPYVLDISELEQIQSTFKQCVKNLCKRKGVLEVDINMCKPNGFKLIQCMICKSTYNKISELRSHLNDHPVISSTEEKTIDPSELIKLLYPDLKQLRELQLYERIAKDLTAGNFTRFYSITNQCGYELDLYSSETETETEQENEATVKFKRNYICELCHRNCERKHQLYEHQRLEHTWSEAVHICSRCNARFVSRQLLNHHYVTQCKNTLKRYMCRYCPLRFYWKDNFKAHTKSHKDMNQNFECIACGRVFAEQKSLSVHLLSVHADEAQLIPCFWCSRKFYRRDYMIKHLKRHGLREQDLPLAETLLAATSKPNGLKIITCKICDIQFENIIELRVHIQVELKLACSMHFPYESRHNYSITNDLGFELELDDSETEDEIAMPTPYICDICHIQCQRKFEIMQHQRTVHRFDKLPYQCEHCIFKCVSKNVMGHHKLGQCLNEDKQYVCPKCSYKFMWPENLQQHILLQHGGYEELTKKPTISKTSKALQCPHCDRTYQLRTRLNNHIRNIHLNNDCKRKPSTTKFLCSLCGKEMPSRASLVTHMRRHTGEKPFKCDLCNMAFPRHAEMLYHRRIHTGEKPFECTICGKSFAHSHKLTRHMLTHSGLKPHKCTHCNKSYRQSKDLNLHLKQHTGGFSFRCEICDESFMLSSTLEKHRMMRRHFVESG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -