Ccau011287.1
Basic Information
- Insect
- Chymomyza caudatula
- Gene Symbol
- ham
- Assembly
- GCA_035041775.1
- Location
- JAWNKW010000147.1:3776437-3807445[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 1.8 1.4e+02 3.3 0.0 2 19 376 393 375 398 0.73 2 9 0.014 1.1 10.0 1.3 3 23 407 428 405 428 0.90 3 9 0.00013 0.0099 16.4 5.4 1 23 434 457 434 457 0.96 4 9 1e-06 7.8e-05 23.0 1.6 1 23 463 485 463 485 0.97 5 9 3.7e-05 0.0029 18.1 3.7 1 23 491 513 491 513 0.97 6 9 0.0012 0.097 13.3 0.6 2 21 521 540 520 541 0.93 7 9 6e-09 4.6e-07 30.0 1.3 1 23 961 983 961 983 0.99 8 9 3.2e-07 2.5e-05 24.6 0.9 1 23 989 1012 989 1012 0.97 9 9 4.8e-05 0.0037 17.7 4.6 1 23 1018 1040 1018 1040 0.98
Sequence Information
- Coding Sequence
- ATGCGTAATGCAGATagtcatcatcagcagcaatacgatcatcatcatcatcatcatcgtgaGCCTGCTGTGGCAGATACTACCACCaccagcagcagtagcagtgGCAGTGGCTGTGGCAGCCAACCAGCCGCGCTGTCGTCTCTCATTCCAAATCCCAGCAGCAGGCGACGGCGTCTGCCAGCCTGGCCATCATTTCAGTTTGAGTCAGTACGTCGCTGCTCTAACGGCGAGGACTACGATCCCAACGCTGTgcgccatcatcatcatcatcaccatcatcatttGGATCTCAGCACAACCGCCACGCCTTTTGGACCACAGCCCACGCTCTTGAGCGCCGGCAACGCGCTTGCGACGTCCAATCCTTTAGAGGACTACGAGCGCCAATTGCCAAGCGCCGCAGCGCCAGCTGCAGCTACTCAGCCGCACACAGAGCAGACGCTGCCGTCCAGCTCACAGCAAATGTTGACCaacggcggcagcagcagcagcatgaaGCAGTTCTTCAATGACAAAACGCAAGCGGAACGCTTTCTGCTGGAGATGGCGAAACTGCGCGAACCTGTCTGTGATTTGGATATACGTGATAGTGGCGTCTTTGCCAGGACACATCTGCAGCGTGGCACGCGGTATGGTCCCTTTCCGTTGCGGCTCTGTCAGGAGCCCAGCGATCGCAATTTAGCCTGGGAGGTCATTGCCGGTCCTCACTTTCGTAGCTGGCTGGAGCCCTCATCGGATGTGGCCACATGGCTTAGAAAAATACGCGCTGTCAGTAATGATGAAATGGAAGAGGCTAATTTAAAGTACTTCATAATTGCGGGCTATCTTTGGTACGAAACCAATCGGGATATAAATGCTGGTGAAGAAATTTATATCGATGGAGGACCCAAAACGCCCGTTGAAatcaatgaaaactttttaggTGGCGGTTTGGGtagcgcagcaacaacaatgggttCTGGGGTGACCAGCGGCGGTTCATTACCCAGCGATGATCGCAGCGATCGTGATAATGGTTCACTTTACAGCGGTGACGACTATCACAAAGATACGAAAAACTCATCGCTGAATAGCAATCAAGGTGACAACGATTACAAAGACGAAGAGAACGGTTACGATATACGCTGCGAGGTCTGTGATAAAGTGTATCTGGATTTAGAACGCCTGGATGATCATCTAGTTGGCGCACATCATTTCAAGCAAGGCGAAGTCATCTGTGAGCTGTGTTCCCAGCGTTTCTGTCATCGAACCTTGTTGATTAAGCACGGCGCTATAGTCCATAATAATATACGCAAATATTCCTGCGAGAACTGCACCAAGGTATTTTGCGATACATCTTTTTTACAGCGACACATACGCGGCTGTCACGTGGGCGCTAGAAGTCATCCCTGTCCCGAGTGTGGCAAAACATTTGGCACCTCTTCGGGCCTGAAGCAGCATCAGCATATACACTCCTCGGTCAAGCCCTTTGCCTGTGAGGTGTGTTTCAAGGCCTACACACAGTTCTCGAATCTATGCCGGCATAGACGCATGCATACGGATTGTCGCATTAACGTCAGCTGTCCCAAGTGCCGTCAGAGCTTTAGCACAGTCTCAGCGCTGTCCAAGCACAAGAAGTTCTGCGATTCCACGGGCAGTTATCGCAACCAGGGAGCACATCATAAGTCAGCGAGCGCTAGCGGCTTAGAAGGCACTCGTGGCGTACATAATCCGGCCGGACCACCTACAGCAAATATCGATAACAGCGCTGCCATGGCCACACCACCGAATCCGTTTCAGCTCATGCTGCGCACAGGACCTTCTTTCTTTCAAGGCTTTCCACCATATGGACTGCAGAGCATTTTTCCGCAAAGTCCGCTTCAGGCGTCGCACTTTCCGTTGTTCTTTCCCTCACCAAATGCGGCTTTTAGACCCCAAATGCCATATGGCGGACGCCTTGAGGGCCTGGAGGCAGAGCTCAGACCCAAGCTGGAGCGTGAGCTTAAGCATGGCCTAAAGCGTGATAGCAGTCCAGAAATACCGCCGGTTAAAACTGAGCCAATGCTGCACGTCAGCGATGATGAGGATTCCAACTCAATGACAATCGATATGAAAACGGAGAGCAATGGTGAATTGAAGGAAGAGCTGAAACATGATTTCAAGCAAGAGATCAGCAGAGAGCAGCAGGTGGAAGACGATCGCCGCTCCATAGACATACTCAGCACCTCGCCGCATGAGCCTCCCACGGAGCGTCCCAGCAGCGCCGATAAACGTCAGCCCACAGAGCTGCCATTGGATCTGAGCGTTAGCCGCAAACGTCGCAGTTCGGCCAGCACGCCGCCGCAGTTGACAAGCAGCTCGCATAGCGTACACTCCGACAGTCATGATCTGGAGCCGGAAGTGGATGAAAAACCGcttaaactgcaaaaattgcaCAGCTCCGGCGAGTCTTCTACCTCGCGTCAGTCCTATAAGGGCAGCAGTCCTACGCCAACCGCTTCACCGGGTCCAACGCCCTCGCCCTCTTCGCCCAGCACGGTCGGTGAGTTGAGCAGTATGTCGGACAGCGGCGTTCAAGCAGCCAGCGTCaacgccgctgccgccgccgccatgGCCTGTCCACAGCCCATACATCCGCTGGTGCTGGAAGAGTTATATCGCACGCGCGCTTTGGGCGCTTTTCCACCGCATCCGTTTCCTTTTTTAGGCCCAATGGGCGGACGGCCCAATTTTGAGCCCGCGTCACCGACTGCTAACCATCAACATCATGCAGCCAATAACGCGCGTAATGTGCCGTTTCCGCCCGAGCAAAACTTCCGTGAGGCGCTGCGCGCCGTCGGCCTATCCAACAGCGTGCTAAGCGCTGCAGCTGCCAGCAGTGGCAAGCTCAAGGACCGCTATACCTGCAAGTTCTGTGGCAAGGTGTTTCCACGTTCCGCCAATCTGACACGCCATTTGCGCACACATACGGGCGAACAGCCGTATACATGCAAGTATTGCGACCGTGCCTTTAGCATTTCATCGAATCTGCAGCGTCACGTGCGCAATATACACAATAAGGAGCGTCCTTTTCGCTGTGATCGCTGCGATCGCTGTTTTGGGCAGCAAACGAATCTCGATCGTCATTTGAAAAAACACGAAGCAGAGGCCACCGGCGCACTCGGCTTTGGTGATTCACCTTCGTCCAATGAGGCTGATCATGACTCACCCTTGGATGATATACGCTTCTTTATGAATCATGTGTATACGCCTTCAAGTTTGGGTGGTGCGGATGGTGATACGGAGGAGTATGCGGGCAGTGATGATCAGTTGTCCGTGTCAACGCGACAATCCGGTAACATGGAGAAGGAGGTGGCCAATGGCAAtcacagcgacaacaacaccaacattaacaataacagcattagcagcagcaataacagcaacaacaacaacaacaacagtgaaACCTTTACGGTGAGCACTTGA
- Protein Sequence
- MRNADSHHQQQYDHHHHHHREPAVADTTTTSSSSSGSGCGSQPAALSSLIPNPSSRRRRLPAWPSFQFESVRRCSNGEDYDPNAVRHHHHHHHHHLDLSTTATPFGPQPTLLSAGNALATSNPLEDYERQLPSAAAPAAATQPHTEQTLPSSSQQMLTNGGSSSSMKQFFNDKTQAERFLLEMAKLREPVCDLDIRDSGVFARTHLQRGTRYGPFPLRLCQEPSDRNLAWEVIAGPHFRSWLEPSSDVATWLRKIRAVSNDEMEEANLKYFIIAGYLWYETNRDINAGEEIYIDGGPKTPVEINENFLGGGLGSAATTMGSGVTSGGSLPSDDRSDRDNGSLYSGDDYHKDTKNSSLNSNQGDNDYKDEENGYDIRCEVCDKVYLDLERLDDHLVGAHHFKQGEVICELCSQRFCHRTLLIKHGAIVHNNIRKYSCENCTKVFCDTSFLQRHIRGCHVGARSHPCPECGKTFGTSSGLKQHQHIHSSVKPFACEVCFKAYTQFSNLCRHRRMHTDCRINVSCPKCRQSFSTVSALSKHKKFCDSTGSYRNQGAHHKSASASGLEGTRGVHNPAGPPTANIDNSAAMATPPNPFQLMLRTGPSFFQGFPPYGLQSIFPQSPLQASHFPLFFPSPNAAFRPQMPYGGRLEGLEAELRPKLERELKHGLKRDSSPEIPPVKTEPMLHVSDDEDSNSMTIDMKTESNGELKEELKHDFKQEISREQQVEDDRRSIDILSTSPHEPPTERPSSADKRQPTELPLDLSVSRKRRSSASTPPQLTSSSHSVHSDSHDLEPEVDEKPLKLQKLHSSGESSTSRQSYKGSSPTPTASPGPTPSPSSPSTVGELSSMSDSGVQAASVNAAAAAAMACPQPIHPLVLEELYRTRALGAFPPHPFPFLGPMGGRPNFEPASPTANHQHHAANNARNVPFPPEQNFREALRAVGLSNSVLSAAAASSGKLKDRYTCKFCGKVFPRSANLTRHLRTHTGEQPYTCKYCDRAFSISSNLQRHVRNIHNKERPFRCDRCDRCFGQQTNLDRHLKKHEAEATGALGFGDSPSSNEADHDSPLDDIRFFMNHVYTPSSLGGADGDTEEYAGSDDQLSVSTRQSGNMEKEVANGNHSDNNTNINNNSISSSNNSNNNNNNSETFTVST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -