Ccau001086.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chymomyza caudatula
Gene Symbol
hang
Assembly
GCA_035041775.1
Location
JAWNKW010000021.1:129942-154368[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.27 21 5.9 1.0 3 23 268 289 267 289 0.93
2 19 0.34 26 5.6 3.2 3 22 395 414 393 414 0.89
3 19 0.00058 0.045 14.3 3.3 1 22 495 516 495 518 0.90
4 19 0.066 5.1 7.8 0.1 2 21 530 549 529 550 0.93
5 19 0.00067 0.052 14.1 0.2 2 23 667 689 666 689 0.95
6 19 0.0019 0.15 12.7 0.1 1 23 697 720 697 720 0.96
7 19 0.00012 0.0093 16.5 0.2 2 23 805 826 804 826 0.97
8 19 0.00027 0.021 15.3 2.9 2 23 904 926 903 926 0.97
9 19 0.022 1.7 9.4 0.2 2 23 935 957 934 957 0.95
10 19 0.0021 0.16 12.6 0.1 1 23 970 993 970 993 0.97
11 19 0.00012 0.0093 16.5 1.1 1 23 1028 1050 1028 1050 0.99
12 19 0.0019 0.14 12.7 0.9 1 23 1058 1081 1058 1081 0.96
13 19 0.63 49 4.8 0.2 2 20 1089 1107 1089 1107 0.95
14 19 6.9e-05 0.0054 17.2 0.4 3 23 1187 1207 1186 1207 0.98
15 19 0.0048 0.37 11.4 0.1 1 23 1242 1264 1242 1264 0.97
16 19 0.00057 0.044 14.3 0.6 2 23 1331 1353 1330 1353 0.93
17 19 0.24 18 6.1 0.2 2 20 1373 1391 1372 1393 0.91
18 19 0.0062 0.48 11.1 0.3 3 23 1408 1428 1408 1428 0.98
19 19 6.5e-05 0.005 17.3 2.1 1 23 1811 1833 1811 1833 0.99

Sequence Information

Coding Sequence
ATGTGCGACGCTGCCACAGccacaacatcaacaacaaccacatcgACGTCAACTGTCGCTGCAGCAACGGAACATTCGCAGCCGCGACAAAGCTGCTGTCGCCTTTGTATTGCGCCTGCTACCGAATGCATTTCAATTATTAACAGCTATGCGGCCGATAAGGAGCCTCTCTCaaccaaaattcaaaactgcGTCAATATCAAGATCACGCCACAGGATCGCCTCTCCTTGCAAATCTGTCATGCCTGTATAAGCTACTTGAACTCTTGGCAGAGCTTCAAAAATCGATGCCTTAGCTCACAAAGCAAGCAACGTAGTTGGCTGGACACACACAAatccaagcagcagcaacatcagctATTAAACTATTTGGATTTAAATTGCGCTGAAAATGTTGGCAATAACGGTTTGCTggatcagcagcaacaagagcagcagctgGAGTTGGAAGAGAATGCTGCTACAGCAGCAGAGAAGTCTTCGGCTAATATATTGGATGGCATTCCCTCGCTAAAGAAACGCAAATCTTTAACAGTTTATCCGCTACCAGCCATACCTATCAAGGATGAGCCCATTGATACGGATGAAGATTATCAAATGAAGTCCATAGATGAATCCGATGATATGGTGGACCCCACAATGTTCCTAGAGCGTTCCGAGCATGAAGGCGATGTTCCACTTATGACATCCGATTATGATTATACGGCACAACACAGTGTAaccgctgcagctgctgccgcagcACTACCAGCCAACGCCGTGGCCAACGTAGCCGCCGCTGGTGATTCCAAGGTAGCCTCCTGCCGCGCTTGCAGCTTGCAATTTTCTACGCGAGCTAACGCACGTCGTCATGAGCGCAATTTGCATCCAAATCTGTTTCAACTATCCACGGATTCGCCTAACAACACACCCATTACAAAACCAACGCCAGCGCTGGCTGCCGCCTTGGAAATTCAAAGGGCCGCGGCAGCTGCGGCCACTGCAGAGGCCACACGTGCTGCTGCCAGTGGGAATATATCCACACAAAAGTATCGTCAGGTGGTGATGCATGCTTTTATGAAATGTGAAGGAGGTGGATTTGATTACGAAAATCCCGAGCAGTACCAGCATTTGCTCATCAAGGATAAGTATGATTTTATACAGCAAAATAGCGAGTTCTTGGCGCAATACCAGACAATGACCTGCCGCTGTTGTAACAAGTACTTTAGCACATATAAGAACTTTATGGCACATGTTCGCAAAAAGTATCCAACGTTACCACGTAACCTATGCTTCAACTGCCTCAAGATGAATGATTCCAAAGCGCTGTTCATATCGCACTTGAAAAAGCGCAACTGCATCAATTTGTATAAGGTGCTTAATAGTTTGCGTGCGAAGCAGCCAAACTTTGTGCCTGCAGATGCCGTCGCCTCGGTGCCTACATCGGATAAATCAGTTGTACCCGAAAAGCTAAGAGCCAAGGAATTGCTGGTTAATAAGCTTTATGAGTGTAAACTGTGCCCCAAGGGCTTTCGCACAAAACATGAATTTCGCACGCATGTTTATGACAAGCACGCGGATGTGCAGCGGAAGGATAATAACTCCATACAATGTAGTTTTTGTGGCCTGGACTTTGCCGATCCAGTAGATAGGCGACGGCATTATAATAATATGGATTGCATAGTCAGATTGCGTTGCATGACATGCGATGCCAAGTTAGAGACGCATCAGCGCTTTTTGGATCATGTCTATCAGGATCATTTAGGCGGCGTAAGCAGCGATAATACCTCTTCGGCCAGTGGAGTGGCGCGTAGCAACAGCATAGAACATTCGCCAGGAAAACGCAGCCTATTAGGTGCTCTAGGCATTGGTGTATCCTTCTCCAATGAGGAATCACGAAGCAGTAGTGCCGCACCAACACATACCTCTACACCCAAGCCGGGCGCTGTGACTGCTCCAGGTAATACTGTAGCTTCTGGACAAGCGCCCAAATCGCAGTACTTTTCGCGCATGCCTCAAGTGTGTCCCATTTGTGGACAGCAATACAATAACTATAATAATGTACTGCGTCATATGGAGTCTAAGCATCCTAATAAGCTGCCTGAGACCTACAAATGTGTGCGTTGCGGCCTGGGCTATCCGCGCATATCTTATCTGCGCGAGCATATGATAAATGTCCATGGCGTAGACAAAAATCGTCATTCTGGCGGTTTTGAGTATATCGTGAACGCGGATGCTGTCAAATTGGCGGATGGCAGCACGCCCAATGTGTACTCTGGTCGTTACGACTATGTGATGAAGGATTTGATGTCGATAACAAATGGTGGGACACTCGATGATGACGAGGAGGAGGCCAGCGTAGCGAAAAAGATTCGACTAGACGAAAGCGGTGCCGCCGGCAACAATAATACAAGCAGCGGCAGTCAGCAAAAGGAGTGTCCCATTTGCAATTCCATATTTAGCAACAATATTGGACTATCCAATCACATGCGTTCGCATTATACAGCCTCCAGTGCCACAAATGCCGCGTTGGCAGCTGCCAATCGCATGACTCCCAAATCCTTAACTATCACAGCTACCAGCTCGGTCACCCCAACACCGGCAGCTGTAGCAACAGCGAttctcagcagcagcagtttgcCACCAGCCATGCTCAATCAAACACCACAGGAGCAGGCCGTGTTTAGGCGTAGCCTTGATCAAGCTGCTGATAGACGTTTTCGTCGAATGCGTTGTCGCATTTGTCAGCGTCGTTTTAGCTCCAAAAAGTCGTATCGCTATCACATGCTCACCGATCATCAAGTCCAGAATGTCCAATTTATCAAATGCAAGCTCTGCAATGCCGAGTTTGCCTACGAAAAGGGACTTAAGGTGCATCTCTTTAAGGTGCACGGCACCGTGATCAAGGATGAGATGATTGTAAAGCAATTCGAATGCGAGGTCTGCTCGATTGTGTATAGTTCTGAGTTGGAGCTGCAACAGCATAAGCGCAGCGTGCACAAACATACAGTACTTAATACTGACGGAGCTGCCCAAGATGAGCCCTTAGCTAAAGACGAAACGGTGGACACTTCATCGGCACCTATTATGCCGCTTTATTGGTATCAATGTAAATACTGCCCGTCAAACTTCAATACTAATAAGAAGCTGGCAATACATATTAACTCCCATGATGAATTCGATTCGAATGACTATTCTTGCAAAGACTGCGGGAATGTGTATAGTGGACGCAAGAGCCTATGGGTGCATCGCTATAAGAAGCATCCGCAGGTGCCAGATCCCGCCGAATGTGTACTCTGTCGCAAAATCTTCTTTGATCGCCAGATGCTGGACAATCACATGCCCACATGTAACCGCAAGCCGATTACTGCAACAGGCGCACACCAACAGGACACGAATCCCGCTTCAATTACAACCATGTCGGCTCGCGTATTCAAGCACAAAACTggcgacgatgatgatgaagatgatgagcTTATGCTGGAGGATGGCGGCAGCGATAGTAATACTCCAGCCGTTGACCATATGGCTGGAATTTCAAGCAGTCAACCTTTAAAGATACGCATACCGGAAGTAGCATGTACGATATGTGGAGCACGTTTTACCGATCAAGAAATGTTTAGCAAGCATATACAAAAGCATGAACAAGAATTGTATACAGACAATCCTTTGGCGGCCATGTTTGACGATGGTCCTGTTGATCAAAGTCAATTTTATGTGGAGCGACAAAATGAGAACGGGGAATATGCTTGTGATTTATGCGCTAAGACATTCCCCCAGGTGATTGCTCTCAAGGTTCATCGCAAATGGCATTTCAGAGGTGATAGCAAGCAGAATCCCAACGAAGCCGAAGCGACGCtgaacaacagcagcaacaacaactcgcTCAACTCATCGACGCTACATCTAAGGGAACTACACGCAGTGGGACTAATGCCAAATCAACAGCATCAACACAACAACTCGGGTGCAGCAACAACGAGCAAATCTCTAAAACGCAAACGTGAACTTAAATGTGAATATTGCGCTTCAACCTTTATTAGTAATAATAATCTTCGTCGACATATGTATGAGCTACATAAACACGAGGTTAGCAATTTACCAGAACCGCCAGTTATAGAAGTGGATAAGCCATTGTCCTGTAGACGCTGTGAtctcaaatttaaaacaaaggaATTATGGATAGAACATAAATTGGCCGACGCCAAGGTAACACGGCCATTCTGTCCATTCCAATGGGGCTGTGATTTATGTGGCGAGTATTTGTCGCGCaaagaaaagttaattaaTCATATAAACAATCATTTAAAGGAGGATGTAATAGTACCAGTGACTAATAAGATCATAGTGAATAAATCTTCggcagaaacaacaactaacaagcGAACACCTAGTAATGTAACAtcaacaacagcggcaacatTAATAACAAGTAGCAGCAATAGCACAGTGGTTCAAAAGGCTGTGCCAAAAACAGCCACGCCCACGCAGCAACATGTAAAGGAAAAGCAAATTATACCTAAAGGGAAAACGCTTCATGACACGGAGGAAGCAGGTGAAGATCAAGATGATACAGATGTTGATGAAGACAATAGCTCAGATGACGATGATGGTGTGGACGAAGAAGATGATGATAGCACAGATGATGACGAGAACgtcgatgatgatgatgatgatgatgatgaagatgatgatgatgatgaggatcatgatgatgataatgatgatgatgatgatgaggaggaagaagaggaaagcGAAAATGAGTCAGGAATGCTGCACAACAATAACTTAGTTTCAGTCAGAGATAATGATGATATGGAAGATGACCTAATAGAGCACATCGAAGAGATGGATGATGATGTGGGTGCTGTGGCCGAGATAGTAACCGATGTGGATGATGATAAAGAACTAAATGAGGATATTGATGAGTTGGAGGcagaagatgatgatgatgacgatgatgtgCTGGAACAACACAGTGCAAAATTAGAGATGCCGACGCGTGTTTCCTTCGATGACATTGAATATATACATGCTAGTAAGCATAAGCGTGTTAatggcaaacaacaacaacaacaacgcagcaATTCCGCTGATGGTAACCGGGCACAAGTTATTGATGGTGAAGcagtgcaacaaaataatgatTTAAATGCTGTTAAAATGCATCATGTCTTGGTTGATGATATttatgaagaggaagatgatgatgatgatgaggatgtTGGTGTTTTAAAAGCAGCTGGGGAAGGAGTTAATAAAGGCTCTACCGCCTCAACAAGCTCCTCCTCAGCGTcagacgatgatgacgatgatgatgaagaaaGTGAGTCAACAACATCGCATTCAACTGGTGAGCGGcgtaataatataaataaaaaagcagtagcagcatatataaatacaaatgctgctgctgagtGCATTGAACAGTCTAGTAATTCGAGTTATACGTGTGATCTATGTCAACTTTGTTTCGATTCTCAGGAGCTTCTGCAGACTCATATAAAAAGTCATTTTCTCAATGGACCGCAAGTCGATAGCAATGGTACcaaggcagcaacaacatctccaaacaacaacaataaaaccaaACCGTCCTGCATGGATATGAAAAGTGCAACTGCAGCTgtagcaacaactgcaagcAATTGA
Protein Sequence
MCDAATATTSTTTTSTSTVAAATEHSQPRQSCCRLCIAPATECISIINSYAADKEPLSTKIQNCVNIKITPQDRLSLQICHACISYLNSWQSFKNRCLSSQSKQRSWLDTHKSKQQQHQLLNYLDLNCAENVGNNGLLDQQQQEQQLELEENAATAAEKSSANILDGIPSLKKRKSLTVYPLPAIPIKDEPIDTDEDYQMKSIDESDDMVDPTMFLERSEHEGDVPLMTSDYDYTAQHSVTAAAAAAALPANAVANVAAAGDSKVASCRACSLQFSTRANARRHERNLHPNLFQLSTDSPNNTPITKPTPALAAALEIQRAAAAAATAEATRAAASGNISTQKYRQVVMHAFMKCEGGGFDYENPEQYQHLLIKDKYDFIQQNSEFLAQYQTMTCRCCNKYFSTYKNFMAHVRKKYPTLPRNLCFNCLKMNDSKALFISHLKKRNCINLYKVLNSLRAKQPNFVPADAVASVPTSDKSVVPEKLRAKELLVNKLYECKLCPKGFRTKHEFRTHVYDKHADVQRKDNNSIQCSFCGLDFADPVDRRRHYNNMDCIVRLRCMTCDAKLETHQRFLDHVYQDHLGGVSSDNTSSASGVARSNSIEHSPGKRSLLGALGIGVSFSNEESRSSSAAPTHTSTPKPGAVTAPGNTVASGQAPKSQYFSRMPQVCPICGQQYNNYNNVLRHMESKHPNKLPETYKCVRCGLGYPRISYLREHMINVHGVDKNRHSGGFEYIVNADAVKLADGSTPNVYSGRYDYVMKDLMSITNGGTLDDDEEEASVAKKIRLDESGAAGNNNTSSGSQQKECPICNSIFSNNIGLSNHMRSHYTASSATNAALAAANRMTPKSLTITATSSVTPTPAAVATAILSSSSLPPAMLNQTPQEQAVFRRSLDQAADRRFRRMRCRICQRRFSSKKSYRYHMLTDHQVQNVQFIKCKLCNAEFAYEKGLKVHLFKVHGTVIKDEMIVKQFECEVCSIVYSSELELQQHKRSVHKHTVLNTDGAAQDEPLAKDETVDTSSAPIMPLYWYQCKYCPSNFNTNKKLAIHINSHDEFDSNDYSCKDCGNVYSGRKSLWVHRYKKHPQVPDPAECVLCRKIFFDRQMLDNHMPTCNRKPITATGAHQQDTNPASITTMSARVFKHKTGDDDDEDDELMLEDGGSDSNTPAVDHMAGISSSQPLKIRIPEVACTICGARFTDQEMFSKHIQKHEQELYTDNPLAAMFDDGPVDQSQFYVERQNENGEYACDLCAKTFPQVIALKVHRKWHFRGDSKQNPNEAEATLNNSSNNNSLNSSTLHLRELHAVGLMPNQQHQHNNSGAATTSKSLKRKRELKCEYCASTFISNNNLRRHMYELHKHEVSNLPEPPVIEVDKPLSCRRCDLKFKTKELWIEHKLADAKVTRPFCPFQWGCDLCGEYLSRKEKLINHINNHLKEDVIVPVTNKIIVNKSSAETTTNKRTPSNVTSTTAATLITSSSNSTVVQKAVPKTATPTQQHVKEKQIIPKGKTLHDTEEAGEDQDDTDVDEDNSSDDDDGVDEEDDDSTDDDENVDDDDDDDDEDDDDDEDHDDDNDDDDDEEEEEESENESGMLHNNNLVSVRDNDDMEDDLIEHIEEMDDDVGAVAEIVTDVDDDKELNEDIDELEAEDDDDDDDVLEQHSAKLEMPTRVSFDDIEYIHASKHKRVNGKQQQQQRSNSADGNRAQVIDGEAVQQNNDLNAVKMHHVLVDDIYEEEDDDDDEDVGVLKAAGEGVNKGSTASTSSSSASDDDDDDDEESESTTSHSTGERRNNINKKAVAAYINTNAAAECIEQSSNSSYTCDLCQLCFDSQELLQTHIKSHFLNGPQVDSNGTKAATTSPNNNNKTKPSCMDMKSATAAVATTASN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-