Ccau008787.1
Basic Information
- Insect
- Chymomyza caudatula
- Gene Symbol
- zfh1
- Assembly
- GCA_035041775.1
- Location
- JAWNKW010000141.1:8545440-8549790[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2.7e-05 0.0021 18.5 1.0 1 23 152 174 152 174 0.97 2 15 0.0013 0.1 13.2 1.1 3 23 182 202 180 202 0.94 3 15 8.9e-05 0.0069 16.9 0.1 1 23 363 385 363 385 0.98 4 15 0.00076 0.059 13.9 0.4 1 23 391 413 391 413 0.98 5 15 0.0013 0.1 13.2 5.5 1 23 443 465 443 465 0.96 6 15 0.00018 0.014 15.9 0.1 1 23 494 516 494 516 0.95 7 15 0.017 1.3 9.7 1.3 1 23 522 545 522 545 0.97 8 15 0.011 0.85 10.3 0.9 1 19 552 570 552 571 0.95 9 15 0.00015 0.012 16.1 5.6 1 23 580 602 580 602 0.97 10 15 0.046 3.6 8.3 0.3 3 23 609 629 607 629 0.96 11 15 9e-06 0.0007 20.0 1.0 1 23 638 660 638 660 0.98 12 15 0.001 0.079 13.5 0.1 3 23 668 688 666 688 0.97 13 15 5.5e-05 0.0043 17.5 0.5 1 23 694 716 694 717 0.95 14 15 0.047 3.7 8.3 0.2 1 23 727 749 727 749 0.96 15 15 0.0055 0.43 11.2 0.2 1 23 1288 1310 1288 1310 0.97
Sequence Information
- Coding Sequence
- ATGAACAATCAGGGCTATGGCGGCATCCAATGGATACAGCACCACGCCTCTGTGGCTGAATCAGAGGAGGATATATTGGAAAACGGTGCCGATGAGAGTGACGCCGCTGCCAATGCTGCATATCTTGTGAATGATAACGAAAGGGATGTGGATCTGGACCACATGGCAGCCGAAAATCTAATTTTCATGGCCCGAGATGGTCAGCTGAGCGAGATAATAGGCACGAGTGGAACTAGTGGCACTGTGCTGGTGGCAGCCGACGGCAGTTCTGTTGGCTATGCAGAGTCATTTGATGATGATGCACAAGTTGTCACCGAGGAGGTCATTACGGATGACTGGGTGCAGCAGCAAGGCGCGGAACGCGTGGAAATAGCCGCAGAGCAAATTGCTGGAACTGGCAGTTCGCAGGAGCTGTTAGACATGGAACAGGATGAGTACACCGCCTTGCGGCCGTATCCCTGTGATTTTTGCAGTCGACGTTTTCGCAAAAAGGCAAGCCTTAATAACCATATGCTAGCTCATCAAAACGACCGACCACATTTATGCAAACTTTGCGGCGCTAGATTCTCACGACGTCCCGAGTTAATCAATCATTTTAAAGCGCATGCCGAGGCGCAAGATGCAGCCGATGCGGAGGCCATGCTTGAGGCATCTGCAGCAGGTAAGCTGACAAAAACCAGCAACCATAACTACCAACTAAAAGATTACTTTACAGTGAAATTTGAGCCGCAGAATAGATTCCTGGACGATCATTACTATGAGCACGAGTGGCCTTCATATTCGGAGCCTGTCGTAAATAATACCAGCGCACACTTGCGGCATACGAATTACTTGACAGGAGAGAGTTCCAATGCAGCACCAACTACGCAACGTGGACGCATCAGTCGACTTAAGCCAAAAGAGGAGGCAACACAATATATAGTAATTGCCGATAAGCCAGATGTGGCTGAGCTGGAGTATATGGAGTGCTCTGAGTCACAGCCAAGAGCGTCCTCCGTTGACTTAAGCCAGGCAACACGTGCAGTACAGCCACAGCCTACGGTTTCGCAGCCAGTACGCTATCCCGTTCTGGATAATAACAAGCCGTTTGTTTGCCAGCAATGTGGATTAGCATTTGCGCGAGAGAAGGCTTTGGTCTCCCATATAAAGAACCATCGCGTGGACTCGCCCTTCGAGTGCAATGAATGCCAAGAGATGTTTTGGGATAACACCAGCCTGCTGGAGCATCAAAAAACACATCAGTTTGAGGAAAGTAATTCAGAATATGATCCCACCTCCGCTGAAGACAGTGCTTCCGAGTCGGAGCAAGAGCTGTTGTATGGCgattttttttgcagcaaGTGTGGCATTAGTTTCCATAGGCACGACCTGTTGCGTCGTCATGCCAAGCAGCACAACAAAGTATCAGCGACAGGTAGCGTTTCACAAACTGTGGCTATAAATGCTGACAGTGGCAATGAGAATGCCAAAGATGCAGCGCATAGTTGCAATACATGCGGCAAATCTTTTCCTAGTGCGTTGGAGTTGCTGGCTCACGCTGAAATACATGCTCGTTTCCCGCCTTTTAAATGCGTGCTGTGCGGCGTCAGTTTCTATGAAGAACAAGCCATTAAGCGTCACTTACACACTCGCCACCCCAATGAACTAAAACCCCATTCATGTGTGCTTTGCGGTAAAGAGTGTCGTGACCGCAAGGCTCTAATCAAGCATGCCTGGGATCACTCACGTGAAAAGTGTCATTCATGCTCGAAGTGCGGCAAGAACTTTCACAATAAGGCTCGCTTGAAGCGTCATATGGCTTCACATCGCGATAAATCGGTTATCTGTGAAGTTTGCCAGGAAGAATTTCCCGATGGGCGTTCACTGTCCAATCATAGGCACTCGCATAGCACTACTTCTCCGGGAAAACTGTTCCCCTGTCATGAGTGTGGCAAGACTTTCGGTTCGCGTAGCTCACAGCAGATCCATGTACGCATACATACGGGTGAAAGACCGTATGGCTGTCGTTACTGCTGGAAAGCTTTTGCTGATGGTGGTACATTGCGCAAACATGAGCGTATTCATACCGGAGAGAAGCCCTATGCATGCTCTGTGTGTCCACGCGCCTTCAATCAGCGTGTTGTGCTGCGGGAGCACATACGCTCGCACCACTCGGGTATGGATGTGGTGCGTGGCACTTATTTTTGCACTGTGTGTTCCGCAGATTTGACCACATCGAATGAGCTGATACAGCACCTCATACAGCACAGTGACTCGAACACAGCCAAGCAGCGCCAGCCAATTACCGGGCCACGTAAATACAAGCGCCGACGTAAGTTACAACCACATGAAATTGCACATATGCGTGGTGAAAACCAAAACGCCGATGGTGATGAATATGCCAGTGATATGGATATGTGCGAGTTTGATGTAGACAATGTGGATGAATATTTAGATATGGCGGAGTCGCCCACCAAGAGCAGCAGTAAAAGCAAGCGTAAAAAGGGAAATGCAGGATCCAAATCCGTCACAAATGGTGAAAACTCGGAATTAGCAGCACAAACTACAGAAGCAAAGGACAGCCGTAAATCTAGCAATGTTAAGACACGTTATGACTCTATTAGCAGTAACTCGGATCGCTTGTGGGCGGAAAAATTCATGCAGAATGCTAACCAATCTTCAGATGATGCGCTCTTTCAAATTGACTCTCTGGTAGTGGTCAATGACACAACCTTACCAGCCAGCAGTATACCAGGTGCGATTAAAACGCGTCGTAGTGGCAAGCAGCCAATTGTAGACAAACAGTTGTCCAATAAATCATCGTCAACGGCTGAGACTAAGCTCAATAGCAGCACAactgccagcagcaacagtcgcagcaaaaagaaagcaaCCAAAGCGGCCAAGTCTGCGTCCAACACAAGCTCACGTCCGCGCATGATACACACGGAGAAGTCACGTGCGCCGACTGCTGCTCAGGAAGCTACAAGCAGCGCCAAGAAGACGCGTTCAAAAACGTATGTAACACGCTCGGAGACCAGCAGTATTGGTTTGATACCAGGCGTCAAGTCCAGCAACGCTGGGCGCAGCAGTACATCGACTATTGTAGATGATTATGAAATAATTTCGCCCGCCACACAGCCGCCGAACCAAATCAGCTCAAGTCCTTTGCATATAAAGCAGGAACAGGAACAACAGCGCGTGCAACTTATGTATGATGATACGCACTTGCTCATTGATGCTGCCTTGTTGCGTGAGAAGGCCTACGAAAAGTTTAATCCGAGCATTGTCAATGATCTGGAGGAGATATTGCGTTCACCACTTAAGTCCGATCGAAATTCGCGCTTGCGCTTTACCAGCGAGAGCTCAACAACGCCACAATTCCTGCCGGAGGAGGACCAAAACAATATGATCAAAATAGAGCCCACTTCGCCAGACTTGCGCGAAATGGTAGAGAGCCAGCAGCGAATGTCGAGCCACTCCAGCTCGTCAGCGCGCACCACACGCCATCTCAGACAGCTGAGCGATAACAGAAACAAATATCAGTTAGAGAGCAGCACGCTGCCAAGTCAATCACGTGCGCCAACAAAGCGTTGCAAAATGGCGTCTAGCTCCACGCAAAAGAAAACGAATGCCATGATACGCTCACAATCGTCGGCACGTACGACCACCAAATCGAACTCTGCGAGCAGCTCAGGTACCACATCGTCGTATCTTAGCTATGGAGAGGATTCTTACAATGTTAATGTACCTGCCAGCTCCAATACTGCCGACGTTAGCTCGGCTTTCTTCTCTATATCCGAGGTTGTCTCTGCTGCAGACGCAGCCGATGCTGCGGccaaagcagctgctgctggcaaGCTGGAGCGCAAGACTCGGTCATTTGAATGTGAAATGTGCTCAGCCATTTTCTATGATCGTGCCCAGCTGTTGGATCATGTACACATTCACATTTAA
- Protein Sequence
- MNNQGYGGIQWIQHHASVAESEEDILENGADESDAAANAAYLVNDNERDVDLDHMAAENLIFMARDGQLSEIIGTSGTSGTVLVAADGSSVGYAESFDDDAQVVTEEVITDDWVQQQGAERVEIAAEQIAGTGSSQELLDMEQDEYTALRPYPCDFCSRRFRKKASLNNHMLAHQNDRPHLCKLCGARFSRRPELINHFKAHAEAQDAADAEAMLEASAAGKLTKTSNHNYQLKDYFTVKFEPQNRFLDDHYYEHEWPSYSEPVVNNTSAHLRHTNYLTGESSNAAPTTQRGRISRLKPKEEATQYIVIADKPDVAELEYMECSESQPRASSVDLSQATRAVQPQPTVSQPVRYPVLDNNKPFVCQQCGLAFAREKALVSHIKNHRVDSPFECNECQEMFWDNTSLLEHQKTHQFEESNSEYDPTSAEDSASESEQELLYGDFFCSKCGISFHRHDLLRRHAKQHNKVSATGSVSQTVAINADSGNENAKDAAHSCNTCGKSFPSALELLAHAEIHARFPPFKCVLCGVSFYEEQAIKRHLHTRHPNELKPHSCVLCGKECRDRKALIKHAWDHSREKCHSCSKCGKNFHNKARLKRHMASHRDKSVICEVCQEEFPDGRSLSNHRHSHSTTSPGKLFPCHECGKTFGSRSSQQIHVRIHTGERPYGCRYCWKAFADGGTLRKHERIHTGEKPYACSVCPRAFNQRVVLREHIRSHHSGMDVVRGTYFCTVCSADLTTSNELIQHLIQHSDSNTAKQRQPITGPRKYKRRRKLQPHEIAHMRGENQNADGDEYASDMDMCEFDVDNVDEYLDMAESPTKSSSKSKRKKGNAGSKSVTNGENSELAAQTTEAKDSRKSSNVKTRYDSISSNSDRLWAEKFMQNANQSSDDALFQIDSLVVVNDTTLPASSIPGAIKTRRSGKQPIVDKQLSNKSSSTAETKLNSSTTASSNSRSKKKATKAAKSASNTSSRPRMIHTEKSRAPTAAQEATSSAKKTRSKTYVTRSETSSIGLIPGVKSSNAGRSSTSTIVDDYEIISPATQPPNQISSSPLHIKQEQEQQRVQLMYDDTHLLIDAALLREKAYEKFNPSIVNDLEEILRSPLKSDRNSRLRFTSESSTTPQFLPEEDQNNMIKIEPTSPDLREMVESQQRMSSHSSSSARTTRHLRQLSDNRNKYQLESSTLPSQSRAPTKRCKMASSSTQKKTNAMIRSQSSARTTTKSNSASSSGTTSSYLSYGEDSYNVNVPASSNTADVSSAFFSISEVVSAADAADAAAKAAAAGKLERKTRSFECEMCSAIFYDRAQLLDHVHIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00336126;
- 90% Identity
- -
- 80% Identity
- -