Ccau008314.1
Basic Information
- Insect
- Chymomyza caudatula
- Gene Symbol
- zfh1
- Assembly
- GCA_035041775.1
- Location
- JAWNKW010000141.1:2160963-2169159[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 7.1e-05 0.0055 17.2 3.7 1 23 285 308 285 308 0.95 2 16 0.00028 0.022 15.3 0.4 1 23 315 337 315 337 0.98 3 16 0.013 0.97 10.1 0.6 2 23 365 386 364 386 0.96 4 16 0.021 1.6 9.4 0.7 1 23 476 499 476 499 0.94 5 16 0.15 12 6.7 0.2 1 19 506 524 506 527 0.94 6 16 0.025 1.9 9.2 4.8 1 23 536 558 536 559 0.95 7 16 1.4e-05 0.0011 19.4 0.5 1 23 565 588 565 588 0.96 8 16 0.0013 0.1 13.2 1.9 2 23 596 617 595 617 0.96 9 16 0.0012 0.093 13.3 0.1 2 21 644 663 643 664 0.94 10 16 0.00035 0.027 15.0 0.8 1 23 714 737 714 738 0.97 11 16 0.016 1.3 9.8 2.2 1 23 774 797 774 797 0.96 12 16 6.4e-06 0.0005 20.5 3.3 1 23 828 851 828 851 0.96 13 16 1.1e-05 0.00082 19.8 0.1 1 23 858 880 858 880 0.98 14 16 0.00031 0.024 15.2 1.2 2 23 887 908 886 908 0.98 15 16 6.5e-05 0.0051 17.3 2.7 1 23 914 936 914 936 0.98 16 16 2.6e-05 0.002 18.5 4.1 1 23 942 964 942 964 0.98
Sequence Information
- Coding Sequence
- ATGGAGGCATACGCCGAAGAGCATGTTGAAATCAAAATGGAAACTAAAGATAATAACACCAACAGTGCAACTTCTTGCACAGAAATACAAGAGTGTGCACTATTTCAAGTGGAAGAGGGCGACCTATTTATATTACCAGAAGCAATCAAGCAAGAGCAGGATTCTGATATGCTGCAGGCTCCTGCAGGCTTAAATGTAACAGATATCCCTAGCCCTGGTTACGACGACCATAATTCACTCGAGCAGAGACTGTCAGAGTCTCCACTCCATCAAGATGAAATCAACGCAGATAGTAACAAAGCAATGGAGGAATTATTAATACCAGCAGAGGAAATCAAATTAGAGCAGGATGTTGAAATGTTCTCTACGGGCTTAGATGTACCAGGTATCTCAACTCAGGATTACGACGAAGACGATTCGCTAGACGAGTGCCTCCCAGAGTCGGCTTTATTTCAACAGGCGGAAACTCTGGATACACTATATGAAGTCGACCCGATAATATTACCAGATGCACTTAAGCAAGAGCAGGATATGGATATGTCCTCCACAGGCCTAGATATAACAGATATCTATAGCCATAATTACGAGGACGATGAttcGCTGTATCAGAGATTGCCGGAGTCGGCACTATTTTTACGAGATGAAACCGACGCAGACAAAACCAACCCAGTGGACGACCAAATTATACCACCAGGAGCACTAAAGCAAGAGCAGGGCACTGATTTGTCCTTTACAGTGTTAGATGTAACAGATGACCATAGCCAGGATAGCGAGAGCGATGATTTGCTCAACGATTTGTCAATAGAAGCGTACCAGTTGgagacgaaaaaaaaaccgagaGCTAAGAAAAGATACAATTGTTATGAATGCCCAAAACATTTTAGCAGAGCAGATTATCTACAACGCCATTTTTCACGTACACATAAGCCCAAATCGGATTGGTTTTCCTGCACGCTATGTATACTCAAGTTTAGTCGCAGCGATGCTCTACAAGCGCACATAAAAAGTCACCGAGATCCCAAACACTACGAGCGAAAGAAAACGAAAGACGTAGATTTAAATCTCTGCAAGCCGCATGGCCCTAAGGTCATTGAATGCATgatttgtcaaaataaataCGATAAAATATCACAATTACGACGCCACTTAGAGAAGCACCCCGacttatttaactttaaagaCCATAAAAAACTGAAGATCTATGACCTCGCGGAACAATTGTATCCCGATTTGAAGGTCAAGACAAaggataatttgaaaactctTATACAAAATGATCTGGCAGCTGGCACCTACCAACGTTTTTATTCCATTACCAATCAGTGTGGTTACGAAATGGCCTTGGACAGCTCGGAAACCGAAAGCGAAACGGAACTAGAAACAGACGAGCTCGGAATAAACCTAAGAAGACCACCAAATGCAAAGTATTTGTGCGAGCTGTGCGCAAACAGATACCCGCGTAAATATCAGCTCTATGATCATCAACGACTATCTCACTCCTGGTCTGAGGCACCACATGTATGCGGTCGGTGTGATGCGCGTTTTGTTAGCTTGCCACTGTTAGAACATCACAACGAGTCCCAGTGCAAAAATTCACAGAAGCGCTTCCCGTGTCGCAAGTGTCCCTTGAAATTCCGCTGGAAGCACAACCTAAATGCACACTTTCGCCTTCATCACGTAACAAAACAAACCTTTGAGTGTAATGAATGCAAACGCGTTTTTGACAAGAAAAAGTCACTCACTGTACATTTGCTTATTGTGCATGCTGAATCATCCAAGCTAATTCCTTGCCAATGGTGCAACCGCAAGTTTTATCGTTAtgactttttcttaaaacatCTTAAGCGTCATGACATCAATGAGCAGGACATACCATTGGCTGAGACACTTATCGCCGCCACATCTAAACCTAATGGCCCGAAGAACATTACctgcaaaatttgcaatgtAAATTTTAAGCGCATTGTCGATTTGCGTGCTCATATCCAACAGGAACTGGAGTCACCTCTTTCCCCTCATCAAAACTATGAATTATTGGAGAGTTACTCCATAACAAATGAATCTGGTTTTGAGCTGACCCTCGATGATTCCGAAACGGAAGATGAAGCAACTACTGTGGCAGACCAATATCCTTTGCCTTATGTTTGTGAGCTGTGTCAGGTACCAGGTCGGCGCAAGTATGAACTGATTCAACATCAACGCACTATGCATCATTTCGACAAAATGCCATATAATTGCGAGTCTTGCATATTCAAGTGCGTTTCCAAGAAAATAATGGACTATCACAAGGAAACGCAATGCCTTTGTGAGCAAAAGAAACATGTGTGCGGAAAGTGTCGTTTCAAGTTTAGGTGGTCTGAAAACCTGGAAAATCATGTGCGATCCCAGCATGCTGACTGGCAACAAGAAAATTCTGACGGCAACGAAGTAACTGCTGACACTGAAATTGTAACAAAGGATTCTGAAGTTGGCATACAACTGTTCCAATGTCCGCACTGCGATCGGACCTATAAACGGAAGATGCGCCTCAAGAATCACATACGGGATGTGCATATCAATGGGAAGAAGATGTTTGAGTGTTCCGTATGTGGCAAAGATTCCTCTTCGGCAGGAAGCTTAGCTGCGCACATGAAAAGACATACGGCCGAAAATTACGTTAAGTGCAGTATGTGCGAAATGACATTTCCTAGTCATTCCGAAATGGTGGTCCACAGACGCACACATACTGGTGAAAAACCATACCATTGCACAGTTTGTGGAAGTGATTTCTCAAGTGTATATAACCTAAGGAGGCACACGCAAACGCACAGTGATTTGAAACCgtacaaatgcaatttttgtgaaaagagCTATCGTCAGCCCCATGGCTTAAAAAATCACCTGAAACAACACAGGAGGGAGGTATCGAAAATATGA
- Protein Sequence
- MEAYAEEHVEIKMETKDNNTNSATSCTEIQECALFQVEEGDLFILPEAIKQEQDSDMLQAPAGLNVTDIPSPGYDDHNSLEQRLSESPLHQDEINADSNKAMEELLIPAEEIKLEQDVEMFSTGLDVPGISTQDYDEDDSLDECLPESALFQQAETLDTLYEVDPIILPDALKQEQDMDMSSTGLDITDIYSHNYEDDDSLYQRLPESALFLRDETDADKTNPVDDQIIPPGALKQEQGTDLSFTVLDVTDDHSQDSESDDLLNDLSIEAYQLETKKKPRAKKRYNCYECPKHFSRADYLQRHFSRTHKPKSDWFSCTLCILKFSRSDALQAHIKSHRDPKHYERKKTKDVDLNLCKPHGPKVIECMICQNKYDKISQLRRHLEKHPDLFNFKDHKKLKIYDLAEQLYPDLKVKTKDNLKTLIQNDLAAGTYQRFYSITNQCGYEMALDSSETESETELETDELGINLRRPPNAKYLCELCANRYPRKYQLYDHQRLSHSWSEAPHVCGRCDARFVSLPLLEHHNESQCKNSQKRFPCRKCPLKFRWKHNLNAHFRLHHVTKQTFECNECKRVFDKKKSLTVHLLIVHAESSKLIPCQWCNRKFYRYDFFLKHLKRHDINEQDIPLAETLIAATSKPNGPKNITCKICNVNFKRIVDLRAHIQQELESPLSPHQNYELLESYSITNESGFELTLDDSETEDEATTVADQYPLPYVCELCQVPGRRKYELIQHQRTMHHFDKMPYNCESCIFKCVSKKIMDYHKETQCLCEQKKHVCGKCRFKFRWSENLENHVRSQHADWQQENSDGNEVTADTEIVTKDSEVGIQLFQCPHCDRTYKRKMRLKNHIRDVHINGKKMFECSVCGKDSSSAGSLAAHMKRHTAENYVKCSMCEMTFPSHSEMVVHRRTHTGEKPYHCTVCGSDFSSVYNLRRHTQTHSDLKPYKCNFCEKSYRQPHGLKNHLKQHRREVSKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -