Ccau010214.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chymomyza caudatula
Gene Symbol
-
Assembly
GCA_035041775.1
Location
JAWNKW010000142.1:10911957-10915530[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0011 0.086 13.4 2.2 1 23 76 98 76 98 0.98
2 16 1.5e-06 0.00012 22.5 1.4 1 23 117 139 117 139 0.99
3 16 2.6e-05 0.002 18.6 0.2 3 23 147 167 146 167 0.98
4 16 0.029 2.2 9.0 0.2 1 23 173 196 173 196 0.94
5 16 6.9e-07 5.4e-05 23.5 0.4 2 23 202 223 201 223 0.97
6 16 0.0014 0.1 13.2 5.8 1 23 229 251 229 251 0.98
7 16 3.2e-06 0.00025 21.4 2.9 1 23 257 279 257 279 0.99
8 16 3.1 2.4e+02 2.6 0.3 1 8 285 292 285 296 0.87
9 16 0.0031 0.24 12.0 3.7 1 23 470 492 470 492 0.97
10 16 4.2e-07 3.2e-05 24.2 2.6 1 23 511 533 511 533 0.99
11 16 3.6e-06 0.00028 21.3 1.2 3 23 541 561 540 561 0.99
12 16 0.029 2.2 9.0 0.2 1 23 567 590 567 590 0.94
13 16 6.4e-07 4.9e-05 23.6 2.1 2 23 596 617 595 617 0.97
14 16 0.00031 0.024 15.2 5.4 1 23 623 645 623 645 0.98
15 16 1.2e-07 9.5e-06 25.9 0.6 1 23 651 673 651 673 0.99
16 16 0.11 8.7 7.1 0.9 1 23 679 701 679 701 0.95

Sequence Information

Coding Sequence
ATGGATTATGAAATAATAAGTCAGGATACAACGACAGAGCCATTAACAGAAGTGGCTAATATCATTAAGACTGAGGAGGTAAACGAATTAAGCGAGTTCGATTCAAGCTGTCTTGATGACAACATAAAGGTAGTGAATGAGGCTGAATCTGACTCTACAGAAGAGGTGCATGAGAGCAAATCGCCCGATGATCAGAAGTCTAAGGTGGACTCTAGTCCATCAGGGTATAAATGTGAATTGTGCGCGAGGACTTTCCGCAACATGAGAGCACTAAGTACTCACAAGCGATTTCACGACGCTAGTAAGAGTAAGTTAGAAATTCCCGCTAGTAATCAGCCTGAAGGCAAGTATGAGTGTCAGctatgcaaaaaaaCATTTGAACTGCAATCAACTTTGCGGGagcacatacgcacacatagcGACGGAAAGTTGACGCTGTGCCCCGAGTGCGGCAAGCCCTTTAGAAGCATTGGTAATATGAAATATCATTTAATGCGACATACTGGAGACCTGTTTTTCGAGTGTCCAAACTGTCCGCTACGGTTTCCCTGTCCTAGCAAAATGGCAGCGCATCAATTGCAGGTGCATGGCGAGCGCAAAATCACCTGCGAACTTTGTCCAAAGGCGTTTGTCAGTCAGTATCTTCTAAAGAGGCACATGAAATACCACTCTGGCGAAAAGCCACACAAATGCGATATCTGCAATAGACGCTTTGTCTTTTTGGATCAATTGCGTTGTCACATGCGTTCGCATACCGGCGAAAAGCCTTATAAATGTGAGCACTGTGAGCGTGCGTTTTCCCAGCCATGCGATTTACTCAAACATGTACGCATCCATGTGGGCGATAATGTTTACAAATGTGAAATGTGTCCTAAATGGTTTCGTTTGGCAATTGATGATCAACAAGATATTCAAACCATCGCCCAATGGTTGATTCGTCTGATGCCTATAGAAATCAAACCAGAAGATGGACTACCTCAGAATATATGTACGTGGTGCCTTTCCCAATTGCTGGAATTGCgcaaattcaatgaaatgtGTCTTAAATCGGACCAAAAAATACGTGCGAtgcaaaataatgaaaagaatttaaatttggatttggatttggATGAGCCAACGGTAATAACTCCAAATGATTTGAGTGAATTTAGTGAAGAAATTGAGTATAAGCCGGATTTGATGGATTATGAAATAATAAGTCAGGATGCAACGACAGATCCATTAACTGAAGTGGTTAATATCATTAAGAATGAGGAAGTAAACGAAATAAGCGACTTCGAACAGAGCTATCATAATGATAATGTAAACGTAGTGAATGAGGCTGCGTCTGAGACTACAGAAGAGCTGGATGAAAGTGAATTGCCTGATGATCAGCAACCTAATCCGGAATCAAGTCAGTCAAAGCATAAATGTGAATTATGTGCTAGAACTTTCCGCAATTTGAGAGCGCTAAGTACTCACAAGCGATTTCACGACGCCAGTAAGAGTAAAATAGCAATTGCCGCTAGTAACCAGCCTGTAGGCAAGTATGAGTGTCAGTTTTGCaataaaaCCTTTCAACAGCAATCAACTTTGCGGgaacacatacgcacacatagcGACGTAAATCTTCCGCTGTGCCCTGAGTGCGGCAAGTCTTTTAGCAGCATTGGTAATATGAAACATCATTTAATGCGACATACTGGAGACCTGTTTTTCGAGTGTCCAAACTGTCCGCTACGTTTTCCCTGCCCTAGCAAAATGGCAGCGCATCAATTGCAGGTGCATGGCGAGCGCAAAATCACCTGCCAGCATTGTCCAAAGGCCTTTGTCAGTCAGTATCTTCTGAAGAGGCATATGAAATACCACTCTGGCGAAAGGCCACACAAATGCGATATCTGCGATAGACGCTTTGTCTTTTTGGATCAATTGCGTTGTCACATGCGTACGCACACCGGCGAAAAGCCTTATAAATGTGAGTACTGTGAGCGTGCGTTTTCCCAGAGCTACGACTTAATAAAGCATGTGCGTATACATGTGGGCGATAATGTTTACAAATGTGAAATGTGTCCTAAATGGTTTCGTTTGGCAAGGGAACGGCGCAAACACTTTGCCAGTCATAAGGAAGCTGAGGAAGGTGCTAGTAAAGACATTGACATGCTCATTACAAATGATAatccaaaataa
Protein Sequence
MDYEIISQDTTTEPLTEVANIIKTEEVNELSEFDSSCLDDNIKVVNEAESDSTEEVHESKSPDDQKSKVDSSPSGYKCELCARTFRNMRALSTHKRFHDASKSKLEIPASNQPEGKYECQLCKKTFELQSTLREHIRTHSDGKLTLCPECGKPFRSIGNMKYHLMRHTGDLFFECPNCPLRFPCPSKMAAHQLQVHGERKITCELCPKAFVSQYLLKRHMKYHSGEKPHKCDICNRRFVFLDQLRCHMRSHTGEKPYKCEHCERAFSQPCDLLKHVRIHVGDNVYKCEMCPKWFRLAIDDQQDIQTIAQWLIRLMPIEIKPEDGLPQNICTWCLSQLLELRKFNEMCLKSDQKIRAMQNNEKNLNLDLDLDEPTVITPNDLSEFSEEIEYKPDLMDYEIISQDATTDPLTEVVNIIKNEEVNEISDFEQSYHNDNVNVVNEAASETTEELDESELPDDQQPNPESSQSKHKCELCARTFRNLRALSTHKRFHDASKSKIAIAASNQPVGKYECQFCNKTFQQQSTLREHIRTHSDVNLPLCPECGKSFSSIGNMKHHLMRHTGDLFFECPNCPLRFPCPSKMAAHQLQVHGERKITCQHCPKAFVSQYLLKRHMKYHSGERPHKCDICDRRFVFLDQLRCHMRTHTGEKPYKCEYCERAFSQSYDLIKHVRIHVGDNVYKCEMCPKWFRLARERRKHFASHKEAEEGASKDIDMLITNDNPK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-