Ccau007163.1
Basic Information
- Insect
- Chymomyza caudatula
- Gene Symbol
- -
- Assembly
- GCA_035041775.1
- Location
- JAWNKW010000137.1:7270960-7272519[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.8e-16 6.7e-13 48.2 0.0 2 44 349 391 348 392 0.95 2 3 0.056 96 2.9 0.0 28 37 422 431 421 436 0.89 3 3 1.3e-19 2.2e-16 59.3 0.0 2 42 458 498 457 500 0.95
Sequence Information
- Coding Sequence
- ATGGGCCATTCGTCCACCATAATGGATATACAACGCGCTTTGCGTACCGACAACGAAACTTGCGAAGTGACGCTTGTGGCAAAAGATGGCATAAATGTACGGGCTCATCTATTTGTGCTAAGCACTTGCAGCGATCTGATGCGGAATCTACTAGTGGATGTGCCAACAGGACAGGAGGCTACAATTGTGCTACCCGATATACGTGGGGAACTGCTGGAGAGTATGCTATCGTTTATTTACATGGGCGAGACTAGTTTGCCCTCTTCATGTCTCACAGAGTTTCTGGAAGCCATAAACTTATTGGGCATTAAATCGGCCATTAGTTTTGAGTGCAACACAAGTGCCATCAATAGTTCAAATGTCGTTGCCAACAATATGGCTATGGAGGCCGCCAAATCTATAAGTGGCTTACAAATTGCACAGACGGAACTCTTGGAGGAGGACGACGAAGATCCCAATGCTGTGGTAGCCAAACTAGCAGTAGGCAATTCAGTTCTGACGGATCAACAGCAACTACATCAGACACAAGCAGCGCGTTCGATAGAATATATTGATGTGTACAATGATCAGCCAAAGATTACTTACTCCATTGAACATATGAGCGGCACACCGAATGGAAATCAATATATATTAACCGAAAACACAGGCTCCTTTACCATTACACAATCGTCCGCACCCGTGGCGAAATTGGATGTCTCTTCTGGCGTAGAAGTTGGACACGCAGATGTATCCGAAAGCTTGGTAGAAGACGAAGCAGAAGGCGAAACAACTGAAGATGTAGAAGAATCAACTCTTATCGAGGAGGAGTATATTACACCCTCTGATCCTCTCATTGATTTACATACAGAAGTAGATTTGGGCAACGATGACGACGGTATGCACGATGGCGACATGGATGACGATTTGCTTGAAATGAAGCCGCGAAAAACCGATCTAAAAGTCAGAGTACGTCGTTCaatagcaaataaatttataaagagGCCCACGCctaagcaacagcagcaatttaCTGCGCTGAAATGTGAAATCAAGACTGTAGGCGCAAATGATGCCCTTGAGTTAGCAGCTCAGGCAGTGCTTCACGAAGGACTAAGTCTGCAAAAAGCTGCCGATCgttttgatatttcaaaaacagttCTATGGCGTCGTGTGCGCACAAATCCGGATTATATGAAGCACAATCGCGAGAAACCGTCACTATCAGAAGCCTATGAACGTCTGAAAAATGGTGATTCACTAAAGAGTATTAGCCAAGATCTGCAAATTCCCATGTCCACATTACATCGACACAAAGTGCGACTGTCTGCTCAAGGACGCCTACCAGATTTTGTATCCTGTCGACGGCGCGATACTACGCCCAAGGATGAGCTACGAGATAAACTGGCGAAGGCAGTGCATGCCTGTCTAAACGAAGGCATGTCACAGAATCATGCGGCCAATCTTTTTGAAATTCCCAAGAGTACTTTGTGGCGACACTTGCAGCGCCGTGTGGCCGAATCGGGTCAGAAAGTAAAACGTGAGGAGGACGAGCAAGATGGTGAAGAAGAGATACTCAATTGA
- Protein Sequence
- MGHSSTIMDIQRALRTDNETCEVTLVAKDGINVRAHLFVLSTCSDLMRNLLVDVPTGQEATIVLPDIRGELLESMLSFIYMGETSLPSSCLTEFLEAINLLGIKSAISFECNTSAINSSNVVANNMAMEAAKSISGLQIAQTELLEEDDEDPNAVVAKLAVGNSVLTDQQQLHQTQAARSIEYIDVYNDQPKITYSIEHMSGTPNGNQYILTENTGSFTITQSSAPVAKLDVSSGVEVGHADVSESLVEDEAEGETTEDVEESTLIEEEYITPSDPLIDLHTEVDLGNDDDGMHDGDMDDDLLEMKPRKTDLKVRVRRSIANKFIKRPTPKQQQQFTALKCEIKTVGANDALELAAQAVLHEGLSLQKAADRFDISKTVLWRRVRTNPDYMKHNREKPSLSEAYERLKNGDSLKSISQDLQIPMSTLHRHKVRLSAQGRLPDFVSCRRRDTTPKDELRDKLAKAVHACLNEGMSQNHAANLFEIPKSTLWRHLQRRVAESGQKVKREEDEQDGEEEILN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00339288;
- 90% Identity
- iTF_00336893;
- 80% Identity
- iTF_00336893;