Basic Information

Insect: Chymomyza amoena
Gene Symbol: -
Assembly: GCA_037043745.1
Location: JBAMAX010004257.1:41690-46472[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.31 29 5.8 0.1 2 23 339 361 338 361 0.89

2 6 0.00062 0.058 14.3 0.9 1 23 372 395 372 395 0.92

3 6 0.00027 0.026 15.4 2.7 1 23 405 427 405 427 0.97

4 6 3.1e-06 0.00029 21.5 2.1 1 23 698 720 698 720 0.97

5 6 3.9e-06 0.00037 21.2 0.2 1 23 726 748 726 748 0.98

6 6 1.8e-05 0.0016 19.2 4.2 1 23 754 776 754 776 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.31	29	5.8	0.1	2	23	339	361	338	361	0.89
2	6	0.00062	0.058	14.3	0.9	1	23	372	395	372	395	0.92
3	6	0.00027	0.026	15.4	2.7	1	23	405	427	405	427	0.97
4	6	3.1e-06	0.00029	21.5	2.1	1	23	698	720	698	720	0.97
5	6	3.9e-06	0.00037	21.2	0.2	1	23	726	748	726	748	0.98
6	6	1.8e-05	0.0016	19.2	4.2	1	23	754	776	754	776	0.98

Sequence Information

Coding Sequence: ATGGCTAGCCGCTGTCCCACACCCTTCGCATTTCCCTTTACGCCGCTCGGTCTGAGCCTCTACGACATTGATCCGTCCAGAATTTTGAGCATACTACAACATCAGACTTGGCTGGCCGAGGAGGCATTGCGCACGCGTGGCCTGCTGACGGCGCCCAAGGACTTCTCCCACCGTTTTACCACATTAAGTGATCTGCTTACAAAGGACTATCAACAAAGTAACACACATGCGAATCATCATGGCCCGGGCGTCGTCAATGCCTCCGTCTCCGGCGCTGCCTCTGCCGCAGCCTATACCACCGCTGCCGCAGAGCagtccagcagcagcagcagcagcgctgccAAACAACAATCCTCCGGCACAACGCAATCGAACCGTTCCAGCAATGCACAGCAACAGCagtacaaacaacaacaacaaccgcagcAGCCTCATGTCTTTAACATACGCTATCCCAATCCCCCAGCTTTCTATACGCATCAGCAGACCAAGTCAAGCGGACGCCATGATGCCACACCATCGCCCCAGCAAATGGCCAGCTCTACCTCTACGGCTACCTCAGTTGGTGCCGCCAATGCTGAGCACTCGCCGGATTCGGATGCGCATAAACGCAATACGGATAGCGGCAGCGATGACGTCACCATTGTAGAGCTGCCCAGCGGCAGCGAACGCGTTGTTACGCCCAACAGCAGCGCATTGCTCTATAAGGAATCGCTGGAGCAGCTGCTGGCACAGCAACAGCGTCGCCGTGTGGCCAACAATAGCACCCCCAGCAGCGTCATTGTGGATGCAGCTGGACTGCGTCAATATACGCAGCTTTTGCTGTCCAGCGCCAATACGCCAGCCAGCTGCACCGATACCTCCAGCTGCAAGGAAAAGAGCTCCTCATCGTCTACCTCATCGACGCCACCGCCCAGCTCAGCTCTGCTGGCACAGCATCAGCAGCTTAGCCAGATGCTTAAGAGTCCCTCGGAAACCTCGTCGCTGTTCAGTGAGCCCATTGAGGAAGAAACACGCTGTGTAGTGTGCAATGCGCACTTTCCCAATGTCTGGCTGTTGGAACAACATGCTGCACTGCAGCATCCGCATATTGGACCCGGCGaagaaaaaccctttatatgcGAACAGTGCGGTCAATCCTATCGCTATCGCTCGGCCTATGCTAAGCACAAGGAGCAGAACCATCGAGCACGTCTGCCAGCAGACAAACTTTTTACCTGCGATGTTTGTGGCATGCAGTTTCGTTATCTCAAGAGTTTCAAGAAGCACCGTCTCAATCATGCGCTGGAACGTTTACATGGCAAGAAAAGCGTTGGCATGGGTGTTGGTGTAGGCGCAGGTATGGGCGTGGGCTTAAGCGCAGGTCGCTTAACCAATTCTCAGCTAGAGCAGGACATTGTTACCAGCTCACAGGAGCCCATGCTGGCCGATGAAGGCGAAGATTTGCGCATTAATGTCAAACGTGAGGGTGAAGGTGATGCCACAAACATAGCAGCTGCTGCCGGCAGCAGCTCTGCTGGCAATGCTGGTAGCGAAGAGCATGAGCAGGACAACACTATAGACTCGGCTGGAATTGGTATGCTTTATAATGACAACAACTCCTCGGCCTCGGTTTCAACCAACGCAACAGAGCCAAATATCAGCAGCTCGGATGTAATACATAGTACAAATAAGCGGTCACGCCTACTAAACACCACACACCACTTGGAAACGGATCCCTCCTTTCATcaccatcaccatcatcatcaccacCATCCACAACAGTTGGCCGCACATCTCGCTCACGTCACACTGCCAATGTCCGCTGCCGTGAGCGCagccgccgctgctgcagctACTCCTCATGCGCTCTCCGCTGCAGCGGCAGCCAATGCTAGTAATTCCAGCAGCGCTGGCGGTGCAGTTGTAGCTGCTGGAGCTGGTAGTGGCAGCGGCATTAGCTCTCTCAGCTCTCTCACCTCGCTAATCAATGCGGAGCGCATACCGAATGAACAGTTTTTGGGACTTAATCCGCAGGAAGCATCCATATTGAACTTTTTACGCGTGGATGCGGCTGAGCGACAGCGTGATAAGCGTCCTGCCACTTCGCGCTTTGCCTGCCCCTTTTGTGGCAAGTGCGTGCGCTCCAAGGAGAATCTAAAGCTGCATGTACGCAAGCATACGGGCGAGAGACCCTTTGTATGCCTCTTCTGTGGACGCGCCTTTGGTGGCAAGTCGGATTTGACGCGTCATCTGCGCATACATACGGGAGAGCGGCCCTATCACTGCGAGTCCTGTGGCAAATGCTTTGCTAGAGCGGATTATCTCTCCAAGCATTTGACCACACATATACATAATGCACCACGCTGA
Protein Sequence: MASRCPTPFAFPFTPLGLSLYDIDPSRILSILQHQTWLAEEALRTRGLLTAPKDFSHRFTTLSDLLTKDYQQSNTHANHHGPGVVNASVSGAASAAAYTTAAAEQSSSSSSSAAKQQSSGTTQSNRSSNAQQQQYKQQQQPQQPHVFNIRYPNPPAFYTHQQTKSSGRHDATPSPQQMASSTSTATSVGAANAEHSPDSDAHKRNTDSGSDDVTIVELPSGSERVVTPNSSALLYKESLEQLLAQQQRRRVANNSTPSSVIVDAAGLRQYTQLLLSSANTPASCTDTSSCKEKSSSSSTSSTPPPSSALLAQHQQLSQMLKSPSETSSLFSEPIEEETRCVVCNAHFPNVWLLEQHAALQHPHIGPGEEKPFICEQCGQSYRYRSAYAKHKEQNHRARLPADKLFTCDVCGMQFRYLKSFKKHRLNHALERLHGKKSVGMGVGVGAGMGVGLSAGRLTNSQLEQDIVTSSQEPMLADEGEDLRINVKREGEGDATNIAAAAGSSSAGNAGSEEHEQDNTIDSAGIGMLYNDNNSSASVSTNATEPNISSSDVIHSTNKRSRLLNTTHHLETDPSFHHHHHHHHHHPQQLAAHLAHVTLPMSAAVSAAAAAAATPHALSAAAAANASNSSSAGGAVVAAGAGSGSGISSLSSLTSLINAERIPNEQFLGLNPQEASILNFLRVDAAERQRDKRPATSRFACPFCGKCVRSKENLKLHVRKHTGERPFVCLFCGRAFGGKSDLTRHLRIHTGERPYHCESCGKCFARADYLSKHLTTHIHNAPR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00337042;
90% Identity: iTF_00339413;
80% Identity: -