Basic Information

Insect: Chymomyza amoena
Gene Symbol: -
Assembly: GCA_037043745.1
Location: JBAMAX010002596.1:177514-180026[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.0024 0.23 12.5 0.9 1 23 212 234 212 234 0.98

2 7 0.066 6.2 7.9 2.2 1 23 574 596 574 596 0.96

3 7 2.4e-05 0.0022 18.8 1.9 1 23 602 624 602 624 0.99

4 7 0.12 11 7.1 0.7 1 21 630 650 630 653 0.82

5 7 2.4e-07 2.2e-05 25.1 0.8 1 23 659 681 659 681 0.98

6 7 0.00026 0.024 15.5 0.8 1 23 687 709 687 709 0.98

7 7 1e-06 9.3e-05 23.1 2.5 1 23 715 737 715 737 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.0024	0.23	12.5	0.9	1	23	212	234	212	234	0.98
2	7	0.066	6.2	7.9	2.2	1	23	574	596	574	596	0.96
3	7	2.4e-05	0.0022	18.8	1.9	1	23	602	624	602	624	0.99
4	7	0.12	11	7.1	0.7	1	21	630	650	630	653	0.82
5	7	2.4e-07	2.2e-05	25.1	0.8	1	23	659	681	659	681	0.98
6	7	0.00026	0.024	15.5	0.8	1	23	687	709	687	709	0.98
7	7	1e-06	9.3e-05	23.1	2.5	1	23	715	737	715	737	0.97

Sequence Information

Coding Sequence: ATGGAGCGCAAAGAAGTGGACACACAACAGTTCATCGATCACTCGCTGCTCGCCACTGAGCTGATGGACTTGATAGACCATACGACATACAAAAATGAAGGACCCACAAATCTGACTACATCGGGCAATGCTGCCAATGGCAGCGCTGACTATAGCGACAAGGATGCTTTATCACCGGAACTCAACTTtcataatacaatttttcaatttgtcaaCAAACATGTTGTCGATGACAACTCCGCACGTCCTGCTGTAGTCCGTGCAACAGAGCGCGCGGAAAACTATAGCAACAGCAAGGAGACGGATGTGGAATTTCTTTCACTCAATAGCAGTTTTGACAATGATGTACCTGTGCCTCAAGTTGCGCAACCACAACCTGCATTTCCAGCGCTGGCCATAGAGCCCACGGTGCCCATAGATGTGTCTGCTTCGGCTTTACAAGATGATGAAATGCTTTATGCGCACAGTGTGTCCACCACAAATGCACGCAAGGTGCTGCCGCACAAAAAGCGCATTTCCAGAAAGCTAAAAGGCACGCTGGGCAACATTGAGGCAACTTCCACAAATGGCAATGCGCATTTTGATCTGGAGCAAAACAATCATGTACAGGTGGCCGCAGCCAATGCCGCCTTATATACCTGTGAGATTTGTGGTTATGCGGTGCATACGCAGCTGGATTTCTTTGCACACTTGAAACAGCATTATGAGCCAACGGCGCTGGAGCAGCGTCTGGATGTGCCGCAGCAGCAAAAGGAACCGCTGGATATGTGCGGACTGACGGCGCAGGATAAGCTACAACAGGAGCAGGCCAAACTGGATCAAGTATTTCAGGATGTGCAGCTGAGCTTTGAAAACTTTCACAACATTGCCAAGACGCTCAATCCAGACGAAGATGACATATACGTCATGTCACGTCACAAGCTGCCCAGCCCACATGTCATCGTGGAGAAACTAACGCCAGTTGTGGCCAATGCTGCGCCCTATGTGCCCACCGTGACGGAGCGTGCGCTCAAAAGTGCCGTCAACGATGTGCCCGTAGTGGATGATATTGAATTTAGCGACAGCGAGGATATGCTGGAAGGCATACGCAATGTGGTCGATAAAGTATCTATAGAAGACACCTGCGATGAGCTAGACCTAGAGTTAACTTCAAGCGCTATGCGTGCACCCTGGTTTAACAACAATTTCAGCGATATACCCTTCTCAGGACCCTTAAGTCAGTTGCTACTGCCAGGCGAACCGCCGCCGCCAGCATTACGTGAAGGCAACGTGCCGCTTATTAAACCCATAACCAATAATACGGATCAGCTaacgcttaattttttaaatgccgaGAAGCCTACGGAACAGACTTTGGAAAAGCTAGATGTGCCGCTGGAGAAAAAAGACTACAACGCTGAGGTCACAGAACAAACGCTGCTGGTTAGTTCGCCGCGCTCAAACACACCAACCAAGAGCTCCGCCATAGAGCAAATGCAGCGTTCACCGCTTATAATAAATGCTGATTTTAAACTGGAAGATGTTGATGAGGAGACCACCGAAATGAACGAAGCTAACGACGACAACGGCGATGACAATTATGCGGTTGAATCGACAACAGTTTCCCAggatgattttgatgaaaacttCTTGCGGGAAGCGGAGGAAATTGTGGACAATGAGAAAACCGCAGATAATGAAAAAACAGAGGATAAGAAAAAAACTCAAATCCTGAAATTATTTCACTGTGGAGTATGTGTAAAAGACTTTAATTCGTATAATGCACTCAAATATCATAATCTTCGGCATACTGAGGAACGCTGTTATCAATGCGGCACCTGTGGACGTTCCTTCTATACAAAAAGCGCAAGGAAATCTCACGAAAGATCACATTCCGGCGAAAGACCCTTCAGCTGTGACATATGCCACGCCAAATTTCGCCAATTGGGCGACATCAAATTTCACATCATAGCCAAACATACCGATATCAAGGCATACATGTGCGAGTTTTGTGGCAAGGCCTTCTCCCGAAAGTACTCCCTAGTAGTACATCGACGTATCCATACAAACGAGCGTAACTACATCTGCAGCTTTTGCTCGATGTCCTTTCGTGCCAGCTCCTATTTGCTGGATCACATCAAATCGCATACAGGAGAAAAGCCTCATAGCTGCACACAATGCGATAAAAGATTTCGTGTTTCGGGTGGTCTCAAACGTCATATGCGCATACATCTGCGGAAGGAAGGAGCGCTACAATCCACCAAAAAGAAgcataatagtaataataataaaaataaggcaCAGGATGAAATTAAATCCACAAAGACTGAAGAGCAATCTGAGCAGGAAATCCTGGGCTTATAG
Protein Sequence: MERKEVDTQQFIDHSLLATELMDLIDHTTYKNEGPTNLTTSGNAANGSADYSDKDALSPELNFHNTIFQFVNKHVVDDNSARPAVVRATERAENYSNSKETDVEFLSLNSSFDNDVPVPQVAQPQPAFPALAIEPTVPIDVSASALQDDEMLYAHSVSTTNARKVLPHKKRISRKLKGTLGNIEATSTNGNAHFDLEQNNHVQVAAANAALYTCEICGYAVHTQLDFFAHLKQHYEPTALEQRLDVPQQQKEPLDMCGLTAQDKLQQEQAKLDQVFQDVQLSFENFHNIAKTLNPDEDDIYVMSRHKLPSPHVIVEKLTPVVANAAPYVPTVTERALKSAVNDVPVVDDIEFSDSEDMLEGIRNVVDKVSIEDTCDELDLELTSSAMRAPWFNNNFSDIPFSGPLSQLLLPGEPPPPALREGNVPLIKPITNNTDQLTLNFLNAEKPTEQTLEKLDVPLEKKDYNAEVTEQTLLVSSPRSNTPTKSSAIEQMQRSPLIINADFKLEDVDEETTEMNEANDDNGDDNYAVESTTVSQDDFDENFLREAEEIVDNEKTADNEKTEDKKKTQILKLFHCGVCVKDFNSYNALKYHNLRHTEERCYQCGTCGRSFYTKSARKSHERSHSGERPFSCDICHAKFRQLGDIKFHIIAKHTDIKAYMCEFCGKAFSRKYSLVVHRRIHTNERNYICSFCSMSFRASSYLLDHIKSHTGEKPHSCTQCDKRFRVSGGLKRHMRIHLRKEGALQSTKKKHNSNNNKNKAQDEIKSTKTEEQSEQEILGL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00337824;
90% Identity: iTF_00338648;
80% Identity: -