Camo005149.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chymomyza amoena
Gene Symbol
Lip3
Assembly
GCA_037043745.1
Location
JBAMAX010001191.1:27711-36278[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.11 10 7.2 0.3 2 23 446 467 445 467 0.96
2 15 0.17 16 6.7 6.2 1 23 473 495 473 495 0.95
3 15 0.0092 0.85 10.6 0.2 1 20 529 548 529 550 0.93
4 15 3.3e-05 0.0031 18.3 3.1 1 23 558 581 558 581 0.98
5 15 0.0059 0.55 11.2 1.9 1 23 587 609 587 609 0.99
6 15 0.0082 0.76 10.8 1.7 1 23 615 637 615 637 0.88
7 15 0.2 19 6.4 2.3 2 23 964 986 963 986 0.96
8 15 0.016 1.5 9.9 0.5 1 23 1011 1033 1011 1033 0.96
9 15 0.098 9.1 7.4 3.4 1 23 1041 1065 1041 1065 0.95
10 15 0.055 5.1 8.2 2.1 2 23 1070 1092 1069 1092 0.95
11 15 0.00056 0.052 14.5 0.2 2 21 1105 1124 1104 1125 0.93
12 15 0.00024 0.023 15.6 0.2 1 23 1133 1155 1133 1155 0.98
13 15 1.8e-06 0.00016 22.3 2.8 1 23 1161 1184 1161 1184 0.98
14 15 7e-05 0.0065 17.3 1.4 1 23 1190 1212 1190 1212 0.98
15 15 0.00065 0.06 14.3 2.9 1 23 1218 1240 1218 1240 0.95

Sequence Information

Coding Sequence
ATGAATGGCACACGATATGTTCAAGATTGCTCGATGTTTCTATCGCCTATGACGCGAAACTTGGTTATGGACTTTGATCCGATAATAgcCAATCTTATAATCAAAAACAATTATCCCGTGGAGGAGCACATCGTGCACACATCCGATGATTATATTCTGACCATCTATCGCATACCCAGCTCACCCAAACGTCAGCAGCTAAATGATACGGGTGCCAAGCCCGTGGTGTTTCTACAGCATGGCATACTCTGTGCCTCCGATGACTGGATTATTAATGGGCCGGATACCTCACTAGCCTATATGTTTGCCGATGCCGGCTACGATGTGTGGCTGGGTAATGCACGCGGCAACACCTACTCCCGCCAGCACAAGCACATACATCCGGACAGCTCGGACTTTTGGAAATTTAGCTGGCATGAGATAGGCATCTATGATTTAGCTGCCATGCTCGACCATGCTCTAAACGTTAGCAATGCCAGTTCGTTGCATTTTGTGGCCCATTCGCAGGGTACAACAACGTTCCTTGTGCTGATGTCCTCGCTGCCCTGGTACAATGAGAAAGTGCGCTCGGTGCATTTGCTGGCGCCCATTGCATTTATGCGCAATCATTCGTTTTTGCTGTCCAAATTTGGTAGCATTTTCTTGGGCTCCCCTTCGTTTCTGAGCTGGGTGCTGGGCAGCATGGAGCTCCTGCCGATTACGAGCATACAAAAACTAATGTGCGAACATGTGTGCTCTACGGGCTCGATGTTTAAGTTTTTGTGCTCGGGTTTGCTAGATTTTATTGGTGGCTGGGGCACCAGGCATCTAAATCATACGCTGCTACCTGATGTTTGTTCAACGCATCCTGCAGGCGCCTCCACCACACAAATCATACATTATCTACAGCTCTACAATTCTGGAGATTTTAGACAGTATGATCATGGCAAGGACCAAAATGAGATAGTCTATCAGCAGGCTACGCCGCCTCATTATCAGATATCAAATGTTAAGAGCTGCGTGCATATGTATTATAGTGATAATGATTATATGTCCGCCGTGCAGGATGTGGAATATTTGGCCACTTTGCTGCCCTGCGTGGAACTATTTCGTATACCCTATGACGACTGGAATCATTATGACTTTTTGTGGTCTACTAGTGTTAAGGAAGTGATAAATAATAGAATTATGGATAAAATGCATAGATATGATCTGGAAAATCCCATGAGCCAAATACAAAAGCATTTGTGTTTTACCTATTTCAGTTTAACTCGCAAAATGGATAACGCATCCAGCAGCAAAAAGACAAACAATGTACATACGGTCACAATCTCTTTGGATGCCATACCCAAGCTGCATTGTCCCATCTGCAGCAAGGCTTGGAGTTCCTTGGCCGGTTATGCAAAGCACGTAAAGAAGCATGAGCCGCCGGGCGGCTTTCTGTGCAATCACTGCATTGCGCGTTTTTGTCACGATGATGATCTGAAGGAGCATATGAAAACACACAAAACCGTGAAATGCAGTTCCTGCACAGACGGTGCCGACTATAGCATAGCCGATTATCGCACGCACCTAGCAGAACACCATAATGGCCAAAGTAAGCCTTTTGTTTGCAATAAGTGCGGTGTGGAGTATAGATCTTGGGAGCCTTACAAGCGCCATAGTGAGACAGATTGTGATGCGAAACGCACATTTAAATGCGAACACTGCGATATGAGTTTTGCTGCTAAACACAATCTTAATCTTCATATTAAAAGTTTGCATGCGAAGAAGTCTAGGTTTCGCTGCACCTTTTGTGGCTTCCATGCCAGTGAGAAAAGTGAACTTTTGGAGCATGAGCGCACGCACAAAGGCAAAAAACCCTTCAAGTGTGAGGTTTGCGACAAATCTTTTCCTGATCGCGAAAGCTGCGTCACACATTCCTCCGTGCATACAGGCATAAGGCAAGTGGAATGCAAATGCTGTCATGCACGCTTCTCCTGTCACTCAAACCTGCTCAAGCACAGAAAATCACGACCTAAAACCTGTGGTAGTTATGAGCATGATGAGACGCCCAAAGATAACGACCTGCCACCACCACAAGCCAACAAGTTGTCCAAGTCAAATAGCAGAACGGGCAGGAGAAGTGCTAGAAGAGCAGTATACGAAAGTTCCTCCTCCGAAGATGAAAGAGAATTTATGACCGCATCCTGTGCCTCTACAAGCGATGATGATGTGCCCTTAGCCAGTCGACTGAGAGCTAAGCCAAAAGTGGAAACACAACACAATGGTTATAGTGAATCAGATGATGAAATTCCAGATTTTGAGCCAGACAACAGTGAAAATGAGGATGAAGTGGCCGATATAAAGCTGCCGGCGCCAGCCAAAATCAAAGAGGAGGCCTATGACACCGACTTTGAATACCAGGATGCCAGTCTCTTTGTGCGTACCACTTGTGAGGTCAAGCAGGAGGGCAGTATCAGCGAAATATTTACCAATGAAAAGGACAAGCTGCTAGATGTTTTACTTAACACAGACGCAGCTTCAAATAATCTAAGGCCATTTGAGACTCTCAAAGTGGAACAATCATCTGGCATATTGGATGAAATAGCTGGTGTGCCCATGTTGGAGACACACGAGACAGAGTTTGTAGAAGAAGATGTGCTGGCACTCAAAGAGCTTTCAGACGAAGACGACACACTTTTTGAGATTTCCAAGAAGCTCAAGGCTAAGGCGAAAAAGCAGCCTAAGCCTAAGTTGCAGTCCAGCCCTGATAATGACGCAACTATTAAGCGTAAATATCGCAAGCGCGGTACAGCCCGCACGCCTTCGCCACAGTCGTCTAAGGATGTACCTAAGCGTGTAGCCAAATTAACCAAAAAGGAACTAACGGAGCGACTGCGTATGATCAACAAAGTAGAGAGATCCTGGAAATGTCCGCACTGCGTTAAAATTTATCACATACGTAAACCCTATGAAAAGCATTTGCGCATGGATCACAAACTCAGCGAGCAAGATATTaaggaaatatttaaagattccGACGCACATGAAAAGTTGGCTGAGGAGGTCTTCAAGTGCAAGATATGTGGCAAGATTTATTTGCTAGAGAAACGCCTGGAAACCCATATGAGTGTGCATGGCGAAAATGGCACACTCACTTTTAAATGTCCCTGCTATTGCAATATATTCTTTGCCACCAAGGAAGAGGCAACAGAACATGCGCACAAACAGCACAAGGATCTACTCTACTGCGAGTTGTGCGACAAATATATGACTGGTCATGATAGCCTTAAGAATCATATGAAGAATTTCCATGGGACAAAGCCGCCACGCAATCATCCGCGAAATTTAATCTGCGATAAGTGTGGCAAAAAATTCAGCGGACGCACTTCGCTCTCGGATCATGTACGTTCAGATTGTGGTCGAACGCCGGTTTATCAGTGCAGTGAGTGTGGGAAGCGTTTATCGACGGCGGGCATACTGAAAACCCACATGCTGCTCCATAAGGCGGATACGCCCTATCAGTGCGATAAGTGTGGCAAGACATTCAAGGTAAAGGCACAGTACAAATCGCATCTAAAAACGCGACACACGGATTTCAAGCCCTACAAATGCCATCTCTGTCCTAAGGAGTACCCCTATCGCGAGAGTCTTTTGACCCACATGACGGTGCACACAGGCATCAAGCGCTTTCTGTGCAACAACTGTGGCAAACGCTTCACGTGCATATCCAATCTCCAGGCACATCGCAAGGTGCATGCAGATACTTGCGGGCAACTGCCGCTTAATACAAAGGCCACTGCATATATGGGCGTGCAGCGCGGCAAGTTGTTAATAGGCGCCAAACCTGAAGCCGGCATGGAGTACGAGGAGACCAAGACATTAATAGCGGAGGAAGTGCTCGACCGAGATATGCCTATGGCCCAGGAGCTGAATTTTCCCTCAGAGCCTTCAGCGCCCTTGGCTACGGTGCCCCTTAACTACGCCTCCTCGCATTTAGTGCCACATATTGTGCTGCAGACCATGCAGGCGGAGGCGCGCCAAGCACGAGATTAG
Protein Sequence
MNGTRYVQDCSMFLSPMTRNLVMDFDPIIANLIIKNNYPVEEHIVHTSDDYILTIYRIPSSPKRQQLNDTGAKPVVFLQHGILCASDDWIINGPDTSLAYMFADAGYDVWLGNARGNTYSRQHKHIHPDSSDFWKFSWHEIGIYDLAAMLDHALNVSNASSLHFVAHSQGTTTFLVLMSSLPWYNEKVRSVHLLAPIAFMRNHSFLLSKFGSIFLGSPSFLSWVLGSMELLPITSIQKLMCEHVCSTGSMFKFLCSGLLDFIGGWGTRHLNHTLLPDVCSTHPAGASTTQIIHYLQLYNSGDFRQYDHGKDQNEIVYQQATPPHYQISNVKSCVHMYYSDNDYMSAVQDVEYLATLLPCVELFRIPYDDWNHYDFLWSTSVKEVINNRIMDKMHRYDLENPMSQIQKHLCFTYFSLTRKMDNASSSKKTNNVHTVTISLDAIPKLHCPICSKAWSSLAGYAKHVKKHEPPGGFLCNHCIARFCHDDDLKEHMKTHKTVKCSSCTDGADYSIADYRTHLAEHHNGQSKPFVCNKCGVEYRSWEPYKRHSETDCDAKRTFKCEHCDMSFAAKHNLNLHIKSLHAKKSRFRCTFCGFHASEKSELLEHERTHKGKKPFKCEVCDKSFPDRESCVTHSSVHTGIRQVECKCCHARFSCHSNLLKHRKSRPKTCGSYEHDETPKDNDLPPPQANKLSKSNSRTGRRSARRAVYESSSSEDEREFMTASCASTSDDDVPLASRLRAKPKVETQHNGYSESDDEIPDFEPDNSENEDEVADIKLPAPAKIKEEAYDTDFEYQDASLFVRTTCEVKQEGSISEIFTNEKDKLLDVLLNTDAASNNLRPFETLKVEQSSGILDEIAGVPMLETHETEFVEEDVLALKELSDEDDTLFEISKKLKAKAKKQPKPKLQSSPDNDATIKRKYRKRGTARTPSPQSSKDVPKRVAKLTKKELTERLRMINKVERSWKCPHCVKIYHIRKPYEKHLRMDHKLSEQDIKEIFKDSDAHEKLAEEVFKCKICGKIYLLEKRLETHMSVHGENGTLTFKCPCYCNIFFATKEEATEHAHKQHKDLLYCELCDKYMTGHDSLKNHMKNFHGTKPPRNHPRNLICDKCGKKFSGRTSLSDHVRSDCGRTPVYQCSECGKRLSTAGILKTHMLLHKADTPYQCDKCGKTFKVKAQYKSHLKTRHTDFKPYKCHLCPKEYPYRESLLTHMTVHTGIKRFLCNNCGKRFTCISNLQAHRKVHADTCGQLPLNTKATAYMGVQRGKLLIGAKPEAGMEYEETKTLIAEEVLDRDMPMAQELNFPSEPSAPLATVPLNYASSHLVPHIVLQTMQAEARQARD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-