Camo016565.1
Basic Information
- Insect
- Chymomyza amoena
- Gene Symbol
- -
- Assembly
- GCA_037043745.1
- Location
- JBAMAX010003547.1:217638-218889[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00087 0.081 13.8 2.1 1 23 35 59 35 59 0.94 2 9 0.00062 0.058 14.3 2.4 3 23 67 90 65 90 0.90 3 9 1.3e-06 0.00012 22.7 0.2 5 23 107 126 102 126 0.89 4 9 0.0001 0.0093 16.8 2.4 1 23 132 155 132 155 0.97 5 9 0.0017 0.16 12.9 1.8 1 22 161 182 161 182 0.95 6 9 0.41 38 5.4 1.9 1 19 186 204 186 210 0.91 7 9 9.1e-06 0.00084 20.1 3.3 1 23 215 238 215 238 0.96 8 9 8.2e-06 0.00076 20.2 0.4 1 23 249 274 249 274 0.97 9 9 0.00014 0.013 16.4 0.2 1 23 279 304 279 304 0.95
Sequence Information
- Coding Sequence
- atgcgGCCGGATAAACAAATCACTTCCGACAGCGATTTGGACAGTTTGATTGAACTGGATTCCAAGCTAAAGCAAAAACGCCGCAACAGCACTGGCCCAAAATACACTTGTAGTATTGCCGGTTGTGAGGAAAGCTTCAAGCGTTTGGATCACTTGGATCGTCATGAGTACCATCACACAGGCATTaaaaaaCACGCATGCGCTTATGAAGGCTGCGACAAAACCTATTCAATAGTTACACATTTGAAGCGGCATTTGCGTACCACACACGAGCGCCCAGGCACAGCCCCGCAAAAGAACATCGCTTGCGCAGTCACAGAATGCGATAAGATGTTTACCACGGCCAGCAATATGCAGCGTCATATGCGTGAGGCCCATGAGAATCCACGCGAGTACCCATGCAGTCACTGTGAAGCCAAGTTCACACAGAAAATAAAACTGCGGCGCCATGAAATCACAAAACATACGAAAAATTATCCATTCAACTGCAGCAAATGTAAAAAAGGTTTCTATCAAAAATGGCAACAGGAAAGCCACCAGCGTTCTTGTAAACAATATCCCTGTTCCAATTGCTCTCTGAATTTTGACAAATGGACCTTATACCTTCAACATTGCCGCGAAATGCAGCATGGACAAAATCGTCACAAGTGTGAGCATTGCGAACGCAGCTATGACCGACCCAGTGATCTTAGTAAACATATTAAAGCCAAACATTCAAAACCAGACATTGAGACGCCCTCCACATATACTTGCGAGGAGCCCGGTTGTAGTCGTAGCTATTCCTATGAGCGTAATCTGAGACAACATATGCAAACGGCGCATGCAGGTCGGCGCTTCGAGTGCTTAGCCGTTGATTGTGGAGGTTGCTTTAGTAGTGCTCAAAATTTGGCCAAACATTTGGAACGTGAGCACAAAAGTACTACCAAGCGCACATCTTCCAAGCCAGCGCTTAAGTCTGCCAACTTGATTCGAAAACGTCGACGAGATGCAGGGCTACCCGTAAAATCTCATTTAGCGAAGATGTCATGCTTGCAACTTGACAGAAATGTTGATAAGCTTGTGCGAGAACGCAATTCTACGGCCTTAGATAATATTGCCAATGACCTGGAAGCCCAGCTGGAACAGCCTGAAGATGCAACTGTTATAGAGGAGCTCTTATCACAAGCATTGCAAGATAATGATGACAACTAA
- Protein Sequence
- MRPDKQITSDSDLDSLIELDSKLKQKRRNSTGPKYTCSIAGCEESFKRLDHLDRHEYHHTGIKKHACAYEGCDKTYSIVTHLKRHLRTTHERPGTAPQKNIACAVTECDKMFTTASNMQRHMREAHENPREYPCSHCEAKFTQKIKLRRHEITKHTKNYPFNCSKCKKGFYQKWQQESHQRSCKQYPCSNCSLNFDKWTLYLQHCREMQHGQNRHKCEHCERSYDRPSDLSKHIKAKHSKPDIETPSTYTCEEPGCSRSYSYERNLRQHMQTAHAGRRFECLAVDCGGCFSSAQNLAKHLEREHKSTTKRTSSKPALKSANLIRKRRRDAGLPVKSHLAKMSCLQLDRNVDKLVRERNSTALDNIANDLEAQLEQPEDATVIEELLSQALQDNDDN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00339370;
- 90% Identity
- iTF_00337781;
- 80% Identity
- -