Camo020501.1
Basic Information
- Insect
- Chymomyza amoena
- Gene Symbol
- -
- Assembly
- GCA_037043745.1
- Location
- JBAMAX010004390.1:188614-191562[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 8.1e-05 0.0075 17.1 0.3 1 23 151 173 151 173 0.99 2 13 0.0024 0.22 12.5 4.6 2 23 181 203 180 203 0.96 3 13 0.0061 0.57 11.2 0.3 2 23 236 257 235 257 0.95 4 13 0.00022 0.02 15.8 2.1 1 23 341 364 341 364 0.96 5 13 0.00055 0.051 14.5 0.9 3 23 377 398 375 398 0.92 6 13 0.0019 0.18 12.8 1.2 3 23 407 428 405 428 0.95 7 13 0.00054 0.05 14.5 0.2 2 23 455 476 454 476 0.95 8 13 0.00064 0.06 14.3 2.5 1 23 517 540 517 540 0.95 9 13 0.002 0.18 12.7 0.5 2 23 578 599 577 599 0.96 10 13 0.00018 0.017 16.0 1.6 2 23 621 643 620 643 0.95 11 13 0.00012 0.012 16.5 0.6 1 23 658 680 658 680 0.96 12 13 0.00026 0.024 15.5 2.5 1 23 686 708 686 708 0.98 13 13 2.9e-07 2.7e-05 24.8 1.0 1 23 714 736 714 736 0.99
Sequence Information
- Coding Sequence
- ATGCCAGAAGCacaatatttaattacaaatacCGCTGAAGATGCGAGCTTTgcagaaattgaaataaaacatGAAGTGGTTTTGCCGGAGGAAAAAACAGAGAATGTCACCGAAATTAATCCAAAACCACGAGAAATTGACGTTTTCCCAAGTTTTAGCCGGAATGATCAACAGGATGCCGTGCTGCATAGAGACTCAACGATCAAAATAAGCAAACAGTCCCATATTCAATCGGAAATATTCGATTCATTGGCTAATGAACACTCCACTTTTACTAATAGCGAACTCGATGATATGCCTCTTAAGGAACGCCGACTATTATTGCGCAATCAACAGTTGACATCCAATGATCCTTTAGCTACTGAGCAGTCGGACCTAGATAACAAcGCGCACGAATCAACAAGCATAAACTCctcaaaaccaaaaataaaagaaatctttGCCAAAGAATATAAGTGCAATCAATGTGATAGGTCTTATATTTGGCCAGCGAGTCTCAACATACACATGCAAAAGCATACGGCCAAAAGCAACTGGCTCACTTGCCCACATTGTCcccgaaaattttattgtaaggACAACATGATGGCTCATATGCGTAACAAACACGGAGCTCCCAAAGCTTCCAAACGCTCAGGATCAACATTAGCTAAGATTACCGAACTAGACATTAATTTGTGCTTGCCACATGGACTCAAACATATACAGTGCATGCTTTGCTTGCAAAGATTTGACCGCATTAGCGAGCTGCGCAAACACTTGGAAGAGCATGCCAGCAatgttaaagaatttaaaattgctACAGAAGCCTTTAATGAACTTGCTGGCAGCTTTTTTGCTAATGTTAATGATATTgataaagaaaaacttaaacaaCGCATATCGAACTGTCTGACGGTAAAAAACTACGATCgtttttattcaattacaaATCAGGCAGGCCGTGAATTATGTTTGGATAGCTCGGAAACAGAAAGTGAATTTGAGGAAGAGTTGAAGAAAATTATCAAAGTTGAGCGATACGCCTGCGAGCTTTGCAACAGCACTTATTCTCGAAAATATCAGCTCTTTGATCATCAGAGGCAAAAACATGCTTGGTTGGATGCTCCTCATAACAGCCTTGTTCATTGTGAACAGTGTAATCGCAGCTTTCGAGATGCACGTGGCTTAAACGCGCACAATTTGAGCATGCATGCCGACAAATCTAAATTTATAGACTGTCGATGGTGCAGTCTGAAGTTCTCCAACCAGGACTTTCTACTCAAACATTTGCAAAAACGTCATGCTTTAAAGAAGCAGCACTTGCCACTCGCTCAGACGCATTTGGAGGAGTCTTCAGAACCaactggaaaaaaatatataagctgcAAAGTTTGTGAGCTCACGTTTAGGCAAATTCGCGAACTGCGAGCACATCTGGAAAACCACGCTAACTTACAGCGCAGCTACAATTCATCACTGAACTATTCCATTAGCAACGATAAAGGATTTGAATTATCTTTAGATGACAGTGATACTGACGATGACAGCAATTCTTTAGAAGTCAAGTATACATGCTCTCTATGTCAGGTCCAATGCAGGCGCCAGTATGAATTGCAGAAACATCAACTTGCTCTGCACCCTTACGATGCAATGCCACATAGATGCAGCAAATGCATTTTCAAATGTGCCGCAAAGCGTGTGCTTGAACGCCATGAGCGTAGCCAATGCCTAAATAAGGAAAAGATGCTTAGCTGTACTACTTGTGGCTATAAGTTCATGTGGCAGGAAAACCTTGAACTTCATCAGCGTTTGCACAATACATTCATCGACTCATTAAAGCCAAATCGAAAGACTGAGCATTCAAGTGAAAAAATGCTAACATGTCCCCACTGTGATCGCACTTATAAGCTAAACACGCGTTTGAACAATCATATTCGGGATGTTCACAGTCAAGATGGAGAACCGAGAAAGCCCAAAGAACCTAGACTATTTTTGTGTTCCAAATGCGGAGTAAATCTGCGTTCCAGAGGCGAATTGCAACTGCACATGCGTCGTCACAACAACGACAAGCCGTTTCATTGTGACATGTGCGATATGgcatttgtttctttttttgagcTAAAAGTGCATCGAAGAAAGCATACAGGAGAGAAGCCTTACCAGTGTACAGTGtgccaaaaaacttttgcgcGCTCCGACAAGTTAAGAGTACATCAAGCCACCCACAGGGATAAAAAATCGAAACTGCAAACATCAAAATAA
- Protein Sequence
- MPEAQYLITNTAEDASFAEIEIKHEVVLPEEKTENVTEINPKPREIDVFPSFSRNDQQDAVLHRDSTIKISKQSHIQSEIFDSLANEHSTFTNSELDDMPLKERRLLLRNQQLTSNDPLATEQSDLDNNAHESTSINSSKPKIKEIFAKEYKCNQCDRSYIWPASLNIHMQKHTAKSNWLTCPHCPRKFYCKDNMMAHMRNKHGAPKASKRSGSTLAKITELDINLCLPHGLKHIQCMLCLQRFDRISELRKHLEEHASNVKEFKIATEAFNELAGSFFANVNDIDKEKLKQRISNCLTVKNYDRFYSITNQAGRELCLDSSETESEFEEELKKIIKVERYACELCNSTYSRKYQLFDHQRQKHAWLDAPHNSLVHCEQCNRSFRDARGLNAHNLSMHADKSKFIDCRWCSLKFSNQDFLLKHLQKRHALKKQHLPLAQTHLEESSEPTGKKYISCKVCELTFRQIRELRAHLENHANLQRSYNSSLNYSISNDKGFELSLDDSDTDDDSNSLEVKYTCSLCQVQCRRQYELQKHQLALHPYDAMPHRCSKCIFKCAAKRVLERHERSQCLNKEKMLSCTTCGYKFMWQENLELHQRLHNTFIDSLKPNRKTEHSSEKMLTCPHCDRTYKLNTRLNNHIRDVHSQDGEPRKPKEPRLFLCSKCGVNLRSRGELQLHMRRHNNDKPFHCDMCDMAFVSFFELKVHRRKHTGEKPYQCTVCQKTFARSDKLRVHQATHRDKKSKLQTSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -