Camo000540.1
Basic Information
- Insect
- Chymomyza amoena
- Gene Symbol
- -
- Assembly
- GCA_037043745.1
- Location
- JBAMAX010000148.1:436475-441763[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 1.2 1.1e+02 3.9 0.5 2 15 266 279 265 279 0.88 2 20 0.67 62 4.8 1.7 3 23 294 315 293 315 0.95 3 20 7.1e-05 0.0066 17.3 1.2 1 23 321 343 321 343 0.94 4 20 6.6e-05 0.0061 17.4 2.5 3 23 351 371 349 371 0.95 5 20 0.0034 0.32 12.0 1.1 2 23 377 398 377 398 0.98 6 20 0.0015 0.14 13.1 2.6 1 23 403 425 403 425 0.97 7 20 0.02 1.8 9.6 3.7 1 23 431 454 431 454 0.94 8 20 0.083 7.7 7.6 1.0 2 20 671 689 670 691 0.92 9 20 0.13 12 7.0 0.9 2 23 703 724 703 724 0.93 10 20 4e-06 0.00037 21.2 0.3 1 23 730 752 730 752 0.98 11 20 0.00016 0.015 16.1 2.5 3 23 760 780 758 780 0.95 12 20 0.00039 0.036 15.0 1.6 1 23 785 807 785 807 0.97 13 20 0.01 0.93 10.5 4.5 1 23 813 836 813 836 0.94 14 20 1.2 1.1e+02 4.0 0.3 2 10 1053 1061 1052 1072 0.77 15 20 0.71 66 4.7 2.1 2 23 1085 1107 1085 1107 0.92 16 20 4.1e-06 0.00039 21.2 0.3 1 23 1113 1135 1113 1135 0.98 17 20 1.8e-05 0.0017 19.1 1.3 3 23 1143 1163 1141 1163 0.95 18 20 0.0012 0.11 13.4 0.6 1 23 1168 1190 1168 1190 0.97 19 20 5.9e-05 0.0055 17.5 2.3 1 23 1195 1217 1195 1217 0.98 20 20 0.49 45 5.2 7.2 1 23 1223 1246 1223 1246 0.81
Sequence Information
- Coding Sequence
- ATGGGTGCACCTTTTTGGGCTCATTGGTGTCGGCTATGCGCAAAGGACACAGACGAATTGAAGCTggacttaaaaaatgttgatcatGACATAGTTGATGGcatgcaaaagtattttgaagtCAAAGTACGCTTTAACGACAATTTGACAACCAAATTGTGTTCCTGTTGCAACAACTTGTTAAACGAATTAATTCACTTCTCCAGGCGTGTTAGCAAAGCTCAAACTATATTTGAAGTCCTGCGTTTCTTTGATACAAATAAAGCTGTCGATATAAAGGCCCTGAGAGAGCACTGGGGTCTAGAGGAATTTGATTTAACATTGGAATCACACGGAGAACGAAAGACAAATGTGGTAGTTCCCGAATTCATAGATGTTCAAAATGTTTCTGGCAATGAGGACATGCAAGAcgaaaaaaatgacaaaaataaagaagCAGTAGAAATAGCTGTGgataacaaaagaaattttgatgAACAAGATATTTTGGGATTGGCAACAGATTCAGATATAGTGCACAGCTTGGTTTCAATAAACAAGGAACTTGAGAACACAGCGGCATCCTCCCCAGAACACGGTGCCAGAAGCGAGTGCAGCTCTACAGAAGAGTCGGACAATGAGGACGATGATGACTGGACAATCCCAACTGCTTCAAAAAAACCTCTGAAAGTGTCTGACAACCATCAACCGCATGCCATAAAGTCGAATAATAATTCGAAAGACGTCAAGGATGCTCCAATTAATACGAGTGATGATTTTGAGAAATGTTTGGACCATCTCAAGGACGATAAAACTGAATGCAATTTATGCGGTAAAGAGTATTTTACCTCATATCATCATGAGTGTAAAGCGAAGAATAAAAATTCCAAACCAGCTATTTGCCAGTATTGCAATAAGACTTTATCCTGTGTAAAAGGGCTACGGCTACACATTCAGCGGATACACGAAAACAAAAGACCATTTGTTTGCAGCCTGTGCGATAAAGGATTTAAGACATTAAAAGAGCTTAAAAACCATAGGTTCGCACATACTGAAGAGCGGCCTCATTTATGCCCAATATGCAACAAGGGTTTCAAGAAAAAAGCGCAACTAAAGAATCACTCTCAATCACATGGAGAACCCAAAGGACAATGTGATATTTGTGGAAAAAAAGTGCAAACTAAACTTAAATTGCGTGTTCATAAACTAACGCATGAAGCTCCACAGCACAAATGTGATTATTGCGGCAAACTTGCCGTAAGACCGCATACTCTTAAATATCATATGCTACTGCATCTTGGCATAAAGCCATTTCTTTGTAAATACTGTCAAAAAGCATTTACTAGCAGACGTCTCTGTATACAGCATATCCAAAAAGAGCATCCGAAAGAATATGAGCAGGATGAGGACAAGGAGTTATCCAGTAGTATACCCATACCTCATTTTCACGAGATATGCGCGGATGACCCTTTAGGTACTAAACTCTGCTCCTGCTGCAATATATTGTTACATGAACTTGTTGCCTTCTCGACACGAGTTAATAACGCTAAAGCCATGTTCGAGGCGGCGCGATTGTTTGATAAAGACGCAACAATCGATGTTAAAGACTTTAGAAAACAATGGGGATTAGAAGAAAGTATTTCGTCAATGGAGTCTGATGGAATCTCAGCCGATACACACATAATGCCAAACCAAAACAACGCCAATGCTATACAGCCAGAGTTAATAGATGTAGCAGACAATACGGCAATGCAAGGGAATGAAAGCACTTTTAGTCAAAAATGTAGCCAGAGGGACTTCAAAATGAGTAGCATAACTGAAGAGCCTAGCAAACGTGAAATATCAGATGAGCAACAGCAAATATGTAGATACAATGTGAACACTGACCACGGCGAGCTTTTGGTGACTGTCAAAGACGAACCCGGCTCACCTCAATCAGACTTTGCATCAGAAGAGACATCTAGCCTACACGAAAGTGAAGAATTTGAGCCCTatgaaagaaatattaaaaccgAAAAACATAACTCTTTAATGTGTCATTTGTGCGGCAAATCATACCTACAGAGAAAATATTACAAGGTGCATTTAACACAGTGTACCGGAAATACTAGAATTTATAGACCTGCAAAATGTgaaatttgcaacaaaacaatGCGGGCAAAGAATCTGAAGATACATAAACTGCAGGTGCATCAAGATATGAAACCATATGTTTGTGAAACTTGTGGTAAAGCTTTCAAAGTAAAAACAGCTCTTAAAGATCATCAACTATCGCATACTGAGGAGCGGCCACATCTGTGCCCCATATGTAATAAGGGATTTAAAAACCGAGCTAAATTGCGTCTTCATAAGCTAAAGCATGAAGCTCCACAGCACAAATGTGATTATTGCGGCAAACTTGCCGTAAGACAGCAAACTCTTAAAAATCATATGCTACTGCATCTTGGCATAAAACCATTCCTTTGTAAATACTgtcaaaaatcattttctaCAAGACGTCTCTGTATTCAGCATATCCAAAAAGAGCATCCGAAAGAATATGAGCAGGATGAGGACAAGGAGTTATCCAGTAGTATACCCATACCTAATTTTCACGAGatatgCGCGGATGACCCTTTAGGTACTAAACTCTGCTCCTGCTGCAATAAATTGTTACATGAACTTGTTGCCTTCTCGACACGAGTTAACAACGCTAAAGCCATGTTCGAAGCGGCGCGATTGTTTGATAAAGACGCAACAATCGATGTTAAAGACTTTAGAAAACAATGGGGATTAGAAGAAAGTATTTCGTCAATGGAGTCTGATGGAATCTCAGCCGATACACACATAATGCCAAACCAAAAAAACGCCAATGCTATACAGCCAGAGTTTATAGATGTAGCAGACAATACGGCAATACAAGGGAATGAAAGcacttttaatcaaaaatgtagCCAGAGGGACGTCAAAATGAATAGGCTAGTTGAAGAGCCTAGCAAACGTGAAATATCAGATGAGCAACAGCAAATATGTAGATACAATGTGAACACTGACCACGGCGAGTTTTTGGTGACTGTCAAAGACGAACCCGGCTCACCTCAATCAGAGTTTGCATCAGAAGAGACATCTAGCCTACACGAAAGTGAAGAATTTGAGACCTatgaaagaaatattaaaaccgAAAAACATAACTCTTTAATGTGTCATTTGTGCGGCAAATCATACCTAAAGGGAAAGTATTACAATGTGCATTTAACACAGTGTACCGGAAATACTAGAATTTATAGACCTGCAACATGTgaaatttgcaacaaaacaatGTCATGCCCAAAGAATCTGAAGATACATAAACTGCAGGTGCATCAAGATATGAAACCATATGTTTGTGAAACTTGTGGTAAAgctttcaaagtaaaaaaagcTCTTAAAGATCATCAAATATCGCATACGGAGGAGCGGCCACATCTATGCCCCATATGTAATAAGGGATTTAAAAATTCGGTACAGCTTAATaAACACGGTCAGTCACATGGAGAACCACAATTCGAATGTGACACTTGTGGAAAAAAACTACAAACCCGAGCTAAATTGCGTGTTCATAAGTTAATTCACAAAGAGCCCAAATATGAATGTGAATATTGCGGCAAGCGCTCCGTAAACTCGGACACATTCAAACATCATTTGCTAAGTCATGTTGGTATTAAGCCGTATGTTtgcaaatattgcaaaaaaccTTTTACTAGCAAATCAATTTGTTGCAAACATACACTTAAAGAGCATCCCCAAGAATATGAACTTGATAACGACAAGGAATTTGTGCGCAATGAAAAAGTTCCACATTTAAATGAACTGCGTATCatGGTGCGTGCAATGGCAGAGGGCCTAAATTAA
- Protein Sequence
- MGAPFWAHWCRLCAKDTDELKLDLKNVDHDIVDGMQKYFEVKVRFNDNLTTKLCSCCNNLLNELIHFSRRVSKAQTIFEVLRFFDTNKAVDIKALREHWGLEEFDLTLESHGERKTNVVVPEFIDVQNVSGNEDMQDEKNDKNKEAVEIAVDNKRNFDEQDILGLATDSDIVHSLVSINKELENTAASSPEHGARSECSSTEESDNEDDDDWTIPTASKKPLKVSDNHQPHAIKSNNNSKDVKDAPINTSDDFEKCLDHLKDDKTECNLCGKEYFTSYHHECKAKNKNSKPAICQYCNKTLSCVKGLRLHIQRIHENKRPFVCSLCDKGFKTLKELKNHRFAHTEERPHLCPICNKGFKKKAQLKNHSQSHGEPKGQCDICGKKVQTKLKLRVHKLTHEAPQHKCDYCGKLAVRPHTLKYHMLLHLGIKPFLCKYCQKAFTSRRLCIQHIQKEHPKEYEQDEDKELSSSIPIPHFHEICADDPLGTKLCSCCNILLHELVAFSTRVNNAKAMFEAARLFDKDATIDVKDFRKQWGLEESISSMESDGISADTHIMPNQNNANAIQPELIDVADNTAMQGNESTFSQKCSQRDFKMSSITEEPSKREISDEQQQICRYNVNTDHGELLVTVKDEPGSPQSDFASEETSSLHESEEFEPYERNIKTEKHNSLMCHLCGKSYLQRKYYKVHLTQCTGNTRIYRPAKCEICNKTMRAKNLKIHKLQVHQDMKPYVCETCGKAFKVKTALKDHQLSHTEERPHLCPICNKGFKNRAKLRLHKLKHEAPQHKCDYCGKLAVRQQTLKNHMLLHLGIKPFLCKYCQKSFSTRRLCIQHIQKEHPKEYEQDEDKELSSSIPIPNFHEICADDPLGTKLCSCCNKLLHELVAFSTRVNNAKAMFEAARLFDKDATIDVKDFRKQWGLEESISSMESDGISADTHIMPNQKNANAIQPEFIDVADNTAIQGNESTFNQKCSQRDVKMNRLVEEPSKREISDEQQQICRYNVNTDHGEFLVTVKDEPGSPQSEFASEETSSLHESEEFETYERNIKTEKHNSLMCHLCGKSYLKGKYYNVHLTQCTGNTRIYRPATCEICNKTMSCPKNLKIHKLQVHQDMKPYVCETCGKAFKVKKALKDHQISHTEERPHLCPICNKGFKNSVQLNKHGQSHGEPQFECDTCGKKLQTRAKLRVHKLIHKEPKYECEYCGKRSVNSDTFKHHLLSHVGIKPYVCKYCKKPFTSKSICCKHTLKEHPQEYELDNDKEFVRNEKVPHLNELRIMVRAMAEGLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -