Camo018681.1
Basic Information
- Insect
- Chymomyza amoena
- Gene Symbol
- su(Hw)
- Assembly
- GCA_037043745.1
- Location
- JBAMAX010004156.1:24497-28018[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00063 0.058 14.3 2.2 1 20 235 254 235 256 0.94 2 12 2.6e-06 0.00024 21.8 0.4 3 23 307 328 305 328 0.93 3 12 0.45 42 5.3 0.2 1 23 334 356 334 356 0.93 4 12 3e-07 2.8e-05 24.7 1.6 1 21 363 383 363 384 0.95 5 12 3.1e-06 0.00028 21.6 0.6 2 23 396 417 395 417 0.96 6 12 5.5e-05 0.0052 17.6 5.4 1 23 428 450 428 450 0.99 7 12 0.00027 0.025 15.5 0.8 1 23 456 478 456 478 0.97 8 12 1.8e-05 0.0016 19.2 0.4 1 23 484 506 484 506 0.98 9 12 9.8e-07 9.1e-05 23.1 3.1 1 23 512 534 512 534 0.98 10 12 7.5e-05 0.007 17.2 0.5 1 23 538 560 538 560 0.97 11 12 0.00031 0.029 15.3 1.6 1 21 568 588 568 592 0.91 12 12 6.9e-05 0.0064 17.3 0.3 3 23 609 630 607 630 0.96
Sequence Information
- Coding Sequence
- ATGAGTACCAAGGAGGACAAAAGGGCAAATGCCGCTGCCGCAAGACCAAACGAAAAAcgcagcagcggcaacaacacAACTGTGGTGAAAATCATTGGCGTCCAACAGATTTCACCGCCCAAGGACAAACGTGCTGGAGTTAATACAACCAGCACTGGGGCGCGCATAAAAATACTGAACGATGCAGCAACAAAGTCTGGCACAACGTCACCAGCCACAAGGCTGGAAAAGCGCAATAGCAGCGGCACTCGCGTCAAAATACTCAATGATGAGGCCTCGCCCAAGCCCGAGAAACGTGGCAGCAGCTCAACAAATGCTAAAAATGCCAGTCCAACAGGTGGTTCCGCTGTCAAGATATTAAACGAAAAACGCATTTTGCGTGCCACTACGCCAATTGAAACAACCAAGCTTAAGGCATCGCctgtcaaaaaacaaaaaaagatggATCATTATGTTTTGCAAGCTGTAAAAAGCGAGTCAAGTAAGGCGGACACAACATGcagtgttgttgttgatgatgatgacgacgatgagaACACCATTGCATTTATAATCGCCGATGACGATGGCGTTATTAAAGAAAAGCCTAGGGCCGAGAAAGCTACTGAGCTAGCTGTATCCGATGATGAAgccgaagatgatgaagatgaggACAGTGAAAAGCAAAGCAGTGCCAACAATGAAATGAAGGAGATTGTAGAGCATGTATGTGGAAAATGTTACAAAACATTTAGACGcgtcaaaagtttaaaaaagcatCTAGAATTTTGTCGCTACGATAGTGGTTATCATCTACGCAAAGCGGACATGTTAAAGAATCTGGAGAAGATTGAAAAAGATGCTGTTGTTATGGAGAAGAAGGatatatgtttttgttgtagtgaGAGCTATGACACATTTCATTTGGGCCACATCAATTGCCCGGACTGTCCGAAATCGTTTAAAACACAGACAAGCTATGAAcgtcatatttttataacacaCTCGGAGTTTAACGATCATCCATGCTCCATTTGTAATGCCAAGTTGCGCAGCGGTGCTTTATTGAAATTGCATGAAGAGCAGCACAAGATTCGTGGCAAGCCATATGCTTGTAAAATATGTGGCAAGGATTTTACACGCCCCTATCACTTGAAACGCCACCAAAAGTATTCATCTTGCTCGGCTAATGAAAATGATACCATGAGCTGCAAGGTCTGCGATCGTGTCTTTTATCGTCTAGATAATTTGCGAGCTCATTTGAAACAGCATCTGGGTACTCAGGTTGTTAAAAAGCCGGAATACATGTGTCACATTTGCAAAAACTGCTTCTATAGCTTATCCACTTTGAACAttcacatacgcacacacactggCGAGAAACCCTTTGACTGCGACTTATGCGAGAAGAAATTCTCTGCCTTGGTTGCCCTTAAAAAGCATCGTCGTTATCATACTGGCGAAAAACCGTACAGCTGCACAGTGTGCAATCAAGCCTTTGCTGTTAAGGAGGTGTTGAATCGTCATATGAAGCGTCATACTGGTGAAAGACCGCACAAATGCAATGATTGCGGCAAAAGTTTCATACAGGCTACCCAGCTGCGCACGCATTCCAAAACACATTTACGTCCGTACCCATGCGATTTGTGCGAAGAAAAGTTCAAAACTGAGAAACAACTCGATCGTCATATTAAGGATCACACACGGCAAAGGCGTGCTTCATTCATGTGCAAGGattgcaaaaattgtttccGCACGGCCAAGCAGCTCGAGGATCACATCGAAGAAGGCACACATTCAGCCAAGCCACCGCGTCCTAAACGCAAGGTGATTGAACGCACTGACTGCGCCATTTGTGACAAGAACTTTGATAGCACTGAGACATTGCGGTCACATATTCGCAGCGTACATGAATGCAACCCGGACGACATTTTTGGCACTCCCACAGAACCTGTCAAGCGTGCTAAGAAAGCCAAAAAGGTTACAGAAGAGGTGCCTGAAAACCCCTCAGGCTCGGCTGTTTCGAGCAACACGGACGTTGGAGTGGTGGTGCGCGAATTTATTGTGGATGAAACCGCGGATCCGGAGAGCATTGTGCTGGACGATACCACCTACACCATAGTGCCCTTGGACGCATCATCGGAGGAGCAGTCGGCTGGGGTGAAGCCAGAGTCAATTGAGCAAAATGTTCAAACATCTCCAGTTGTAAAGAAAGAGCAACGCAAATCGCTTGCGGCCAGTCTAGCTGCTGCTATAGCAGGCAATGAAGATGAGACGCTTAGCGATGATGACGTAAGCGGTGAGGTGTTGACTGAAGATGatcttaaattaaaggaaaaTGTGCGTAGACTAATTGATATGTTAGTGGATCCACCAACGCTTAAGAAATACGGTTGGCCAAACACCTCTGAGGAGGCTGTACTGTGCAAGGTTATAGAAAACTGTGGCCACGATTTGTCCAAGGCTGGAGACAACTATGCGGAATTGGATTATGGCTCTCGGATGCGTGAATACGCCAAGCTGCTATTCACTGTGGTCATACATAATGACTCTATTAAATCGCTACTTAATAACTTTACCATTGACGAAGTTATTGAGTATTTGTTAGGTATTGATGACGATAATGAGGAAGAAAAGAAGCGTGAAGAATCGGAAGTAAAGTTATCCAGCGTCGAAGCGGAGGCTTAA
- Protein Sequence
- MSTKEDKRANAAAARPNEKRSSGNNTTVVKIIGVQQISPPKDKRAGVNTTSTGARIKILNDAATKSGTTSPATRLEKRNSSGTRVKILNDEASPKPEKRGSSSTNAKNASPTGGSAVKILNEKRILRATTPIETTKLKASPVKKQKKMDHYVLQAVKSESSKADTTCSVVVDDDDDDENTIAFIIADDDGVIKEKPRAEKATELAVSDDEAEDDEDEDSEKQSSANNEMKEIVEHVCGKCYKTFRRVKSLKKHLEFCRYDSGYHLRKADMLKNLEKIEKDAVVMEKKDICFCCSESYDTFHLGHINCPDCPKSFKTQTSYERHIFITHSEFNDHPCSICNAKLRSGALLKLHEEQHKIRGKPYACKICGKDFTRPYHLKRHQKYSSCSANENDTMSCKVCDRVFYRLDNLRAHLKQHLGTQVVKKPEYMCHICKNCFYSLSTLNIHIRTHTGEKPFDCDLCEKKFSALVALKKHRRYHTGEKPYSCTVCNQAFAVKEVLNRHMKRHTGERPHKCNDCGKSFIQATQLRTHSKTHLRPYPCDLCEEKFKTEKQLDRHIKDHTRQRRASFMCKDCKNCFRTAKQLEDHIEEGTHSAKPPRPKRKVIERTDCAICDKNFDSTETLRSHIRSVHECNPDDIFGTPTEPVKRAKKAKKVTEEVPENPSGSAVSSNTDVGVVVREFIVDETADPESIVLDDTTYTIVPLDASSEEQSAGVKPESIEQNVQTSPVVKKEQRKSLAASLAAAIAGNEDETLSDDDVSGEVLTEDDLKLKENVRRLIDMLVDPPTLKKYGWPNTSEEAVLCKVIENCGHDLSKAGDNYAELDYGSRMREYAKLLFTVVIHNDSIKSLLNNFTIDEVIEYLLGIDDDNEEEKKREESEVKLSSVEAEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00336930;
- 90% Identity
- iTF_00338559; iTF_00337734;
- 80% Identity
- -