Basic Information

Insect: Chymomyza amoena
Gene Symbol: -
Assembly: GCA_037043745.1
Location: JBAMAX010001367.1:77049-86192[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 22 6.4e-05 0.006 17.4 3.4 1 23 245 268 245 268 0.97

2 22 0.0046 0.43 11.6 0.4 1 23 281 304 281 304 0.92

3 22 0.0064 0.59 11.1 0.1 3 23 315 335 313 335 0.96

4 22 0.95 88 4.3 8.4 1 22 341 362 341 364 0.85

5 22 0.00019 0.017 16.0 0.3 1 23 369 391 369 391 0.98

6 22 6.5e-06 0.00061 20.5 1.9 1 23 397 419 397 419 0.97

7 22 0.00046 0.043 14.7 4.6 1 23 425 448 425 448 0.97

8 22 4.8e-05 0.0045 17.8 4.4 1 23 737 760 737 760 0.97

9 22 5.6e-06 0.00052 20.8 3.3 1 23 767 789 767 789 0.98

10 22 0.0002 0.019 15.9 0.8 1 23 802 825 802 825 0.94

11 22 0.042 3.9 8.5 0.4 3 21 836 854 834 856 0.93

12 22 0.0012 0.11 13.4 7.3 1 23 862 885 862 885 0.95

13 22 0.00018 0.017 16.0 0.6 1 23 890 912 890 912 0.98

14 22 0.00054 0.05 14.5 3.4 1 23 928 951 928 951 0.98

15 22 6.5e-05 0.006 17.4 2.0 1 23 1240 1263 1240 1263 0.97

16 22 2.3e-05 0.0022 18.8 2.0 1 23 1270 1292 1270 1292 0.98

17 22 2e-05 0.0018 19.0 1.8 1 23 1297 1320 1297 1320 0.95

18 22 0.14 13 6.9 1.1 3 21 1331 1349 1329 1351 0.93

19 22 0.0002 0.019 15.9 7.7 1 23 1357 1379 1357 1379 0.98

20 22 0.0013 0.12 13.3 1.0 1 23 1384 1406 1384 1406 0.96

21 22 1.2e-06 0.00011 22.8 1.5 1 23 1412 1434 1412 1434 0.97

22 22 0.11 10 7.3 4.8 1 23 1440 1463 1440 1463 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	22	6.4e-05	0.006	17.4	3.4	1	23	245	268	245	268	0.97
2	22	0.0046	0.43	11.6	0.4	1	23	281	304	281	304	0.92
3	22	0.0064	0.59	11.1	0.1	3	23	315	335	313	335	0.96
4	22	0.95	88	4.3	8.4	1	22	341	362	341	364	0.85
5	22	0.00019	0.017	16.0	0.3	1	23	369	391	369	391	0.98
6	22	6.5e-06	0.00061	20.5	1.9	1	23	397	419	397	419	0.97
7	22	0.00046	0.043	14.7	4.6	1	23	425	448	425	448	0.97
8	22	4.8e-05	0.0045	17.8	4.4	1	23	737	760	737	760	0.97
9	22	5.6e-06	0.00052	20.8	3.3	1	23	767	789	767	789	0.98
10	22	0.0002	0.019	15.9	0.8	1	23	802	825	802	825	0.94
11	22	0.042	3.9	8.5	0.4	3	21	836	854	834	856	0.93
12	22	0.0012	0.11	13.4	7.3	1	23	862	885	862	885	0.95
13	22	0.00018	0.017	16.0	0.6	1	23	890	912	890	912	0.98
14	22	0.00054	0.05	14.5	3.4	1	23	928	951	928	951	0.98
15	22	6.5e-05	0.006	17.4	2.0	1	23	1240	1263	1240	1263	0.97
16	22	2.3e-05	0.0022	18.8	2.0	1	23	1270	1292	1270	1292	0.98
17	22	2e-05	0.0018	19.0	1.8	1	23	1297	1320	1297	1320	0.95
18	22	0.14	13	6.9	1.1	3	21	1331	1349	1329	1351	0.93
19	22	0.0002	0.019	15.9	7.7	1	23	1357	1379	1357	1379	0.98
20	22	0.0013	0.12	13.3	1.0	1	23	1384	1406	1384	1406	0.96
21	22	1.2e-06	0.00011	22.8	1.5	1	23	1412	1434	1412	1434	0.97
22	22	0.11	10	7.3	4.8	1	23	1440	1463	1440	1463	0.97

Sequence Information

Coding Sequence: ATGGCGCAGCAATACGCAAGTAACTGGCATTTATGGTGCAGACTATGCGCCAAGGATGACGTAAGAGGTAACATCAATGTATTTCTCAAAATTGAGCAAATCCCTGGCGATGAATTAAGCTCGTTTAGCAGTGCTGCTGCTGGAAGTGATCTGGAGTTGGCCACGGCTATTGGTAAATACTTTTGGGTGAATATATCTCGCGGTGGGGATTTGCCCGAAATGATATGCACCGACTGCCTCCAGGTAGTCACTTCATTGATTAACCTCTCAAAACGTATTACACGCGTGCAAAAGTTATACTATGTATTACAAAACATGTCCAAGCAGGAGGAGATTAACATCAATGAGCTGCGCATTAGGTTTGGGGTTCAGGATGAGAACCAATTACATACAGAGGAACACTATGTGGACGAGAAGCCACAGTTAAACGAGCAGGGCCTGCTAGAAGAAACTTTTGAGCTACAAAATCCACTTAGTCCCCAATTGCCCAACCAAAATGAAGTTATTACGGCAAAAAGACACGCGTTTAACAACTGTACCACAAAAGAGTTGTTGGATGAGGATACAGCGAAGCAGTTGGAGGAGGACGAAGAACTTGAGGAAGGTAATGGCAATGCCATTGCAGACGATGATGCTGCCAGTGAGTTCAGCGGTGCCAATTCCGATGACAGTCAAAACCCTGCCAACCAAAAACAGCGGCTTCAAAGTTTTAAGGCCACCAAAGCGCAACCGCATCAGTGCACCGAATGTCCCAGAGCTTATGCCCACTATACAACTCTAAGACGGCATATACGCCGTGAGCATCAAAATAGCCACATACCTATGAGCAGTCGCAAGATTCATCCATGTCAAATATGTGGCATAAAGTTTACCAGTCCCGCCTCCGTTCTATCTCATTTTCAGTACATGCATCAGGACAGACGGCCAGCAAGATCTATTATCTGCGAGGTATGCGGCGTTTCAGTGCACACCATTTCGTTACTTAAAGAGCACATGCTGCGCCATACAGACGAAACTCCTTTCGAGTGTGATGAGTGCAAGAAGTGCTTCAAAAGTGCACATCGTTTGAAATGTCACAAGGAGCAGACACATGACCCGCACAAGTATAAATGTTCCGAGTGTGGCAAGCAGCTAAGTTCCAGAGCAACGCTTAATGGCCATCGTCTGGTGCACACAGACCAAATGGAACACAAGTGCGATTACTGCGgtaaagcttttaaaagaaCGAATGCACTTAAGAATCATTTGATATTACATGCTGGACTGAATCCTTACTCCTGTGAGTTTTGCAAGCGCACGTTTAACAACCGCTCCAATTATCTCACGCACAAGAAAAAGTTACATCCCCAAGAGTTGGCTGCACAGGAAGCAGCAGGCGGTGGCAAGCCTGTTAATCACAACATACCCAATCTAGCGGCGCTACAAGCATTAACCAAGAACAAGGATAATCTGTCGCCATCTGTGGCCActaaacaaaCAATGGCGCAGCAATATGCCAGTAACTGGCATTTATGGTGCAGACTATGCGCCAAGGATGACGTAAGAGGTAACATTAATGTATTTCTCAAAAATGAGCAAATCCCAGGCGATGCATTGAGCTCCTTTAGCAGTGCTACTGGAAGTGATCTAGAGTTGGCCACGGCTATTGGTAAATACTTTTGGGTGAATATAACACGCGGCGGGGATTTGCCCGAAATGATATGCACCGACTGTCTCCCGGTAGTCACTTCGTTGGTGAACTTCTCCAAACGTATTACACGCGTTCAAAAGTTGTACGATGTATTACAAAACATGTCTAAGCAGGGGCAGATTAACATCGACGAGCTGCGCATTAGGTTTGGGGTTCAGGATGAGAACCAATTAGTTACAGAGGAACACTATGTGGATGAGAAGCCACAGTTAAACGAGCAGGGCCTGCTAGAAGAAACTTTTGAACTACAAAATCAACTTAGTCCCCAATTGCCCAACCAAAATGAAGGTATTATGGCAAAAAGACACGCGTTTAAAGACTGTTACACAGAAGAGTTGTTGGATGAGGATACAGCGAAGCAGTTGGAGGAGGACGAAGAACTTGAGGAAGGTAATGGCAATGCCTTTGCAGACGATGATGCTGCCAGCGAGCTCAGCGGTGCCAATTCCGGTGACAGTCAAAACCCTTCCAACCAAAAACAACGGCCTCAAAGTCTTAAGGCCACCAAAGCGAAACCGCATCAGTGCACCGAATGTCCCAGAGCTTATACCCACTATACAACTCTAAGACGGCATATACGCCGTGAGCATCAAAATTCCAAAGAATTGTTCATGTGCAAGGAGTGCGACAAGGAGTTTTGCTCGCGAGATTCTCTCGACCGCCACATGCAGAGCCATATGCGGATCCACATACCCATGAGCAGTCGCAAGGTTCATCCATGCCAAATATGCGGTAAAAAGTTTACCAGTCCTGCCTCCGTTCTATCTCATTATCAGTACATGCATCAGGACACACGACCAGCAAGATCTATTATCTGCGAGCAATGTGGCGTTTCAGTGTACACCACTTCGTTACTTAAAGAGCACATGCTGTGCCATTCAGACGAAACTCCTTTCGAGTGTGATGAGTGCAAGAAGTGCTTCAAAAGTGCACATCGATTGAAACGTCACAAGCAGCAGACACATGACCCGCACAAGTATAAATGCTCCGAGTGTGGCATGCAGCTAAATTCCAGAGAAACGCTTAATCGCCATCGTCTGGTGCACACAGACCAAATGGAACACAAGTGCGATTACTGCGGACTGAATCCTTACTCCTGTGAGTTTTGCAAGCGCACGTTTGCCAACGGCTCCAATTATCGCACGCACAAGAGAAAGTCACATCCTGAAGAGTTAGCTGCACAGGAAGCAGCAGGCAGTGGCAAGCCTGTTAATCACAACATACCCAATCTAGCGGCGCTAAAAGCATTAACCAAGAACAAGGATAATCTGTCGCCATCTGTGGCCActaaacaaaCAATGGCGCAGCAATATGCCAGTAACTGGCATTTATGGTGCAGACTATGCGCCAAGGATGACGTAAGAGGTAACATTAATGTATTTCTCAAAAATGAGCAAATCCCAGGCGATGCATTGAGCTCCTTTAGCAGTGCTACTGGAAGTGATCTAGAGTTGGCCACGGCTATTGGTAAATACTTTTGGGTGAATATAACACGCGGCGGGGATTTGCCCGAAATGATATGCACAGACTGCCTCCAGGTAGTCACTTCGTTGGTAAACTTCTCAAAACGTATTACTCGCGTGCAAAAGTTGTACTATGTATTACAAAACATGTCCATGCAGGAGCAGATTAAAATCGATGAGCTGCGCATTAGATTTGGTGTTCAGGATGAGAACCAATTACTTACAGAGGAACACTATGTGGACGAGAAGCCAAAGATAAACGAGCAAGGCCTGCTAGAAGAAACTTTTGAGCTACAAAATCCACTTAGTCCCCACTTGCCCAATCAAAATGAAGGTATTACGGCACAAAGCAACGCGCTTAAAAACTGTGCCACAGAAGAGCTGTTGGAAGTAAATATAGAGGAGCAGTTGGAGGAGGACGAAGAACTTGAGGAAGGTAATGGCAATGCCTTTGCAGACGATGATGCTGCCAGCGAGTTCAGCGGTGCTACTTCTGATGGAAGTCAAAACACTGCCAACCAAAAACAGAGGCCTCAAGGGCTTAAGAACCACAAAGAAAAAACACATCAGTGCACGGAATGTCCCAGAGCTTATGCACACCTAACAACTCTAACACGACATATACGCCTTGATCACCAAAACGCCAAAGAGTTGTTCAACTGCAAGGATTGCGATAAGGAGTTTCGCACCCGCATTTTGTTTGACCGCCACATGCAAAGTCACGTGCCCAAGGTTCATCCATGTGACATATGCGGCAAACAGTTTACCAGATCCGCCTCCCTCCGATATCATTATCAATACATGCATCAGGACACACGACCAGCACGACCTATTATCTGCGAGCAGTGCGGCGTATCAGTGCACACCACTTCGTTACTTAAAGAGCACATGCTGTGCCATACAGATGAAACTCCTTTCGAGTGTGATGAGTGCAAGAAATGCTTCAAAAGCGCACATCGTTTGAAGCGTCACAAGCAGACTCATGACCCGCACAAGCATATATGTTCCGAGTGTGGCATGCAGCTAAATTCCAGGGACACGCTAAATCGCCATCGTCTGGTGCACACAGACCAAATGGAACACAAGTGCGATTACTGCGGTAAAGCTTTTAAAAGAGCGAAAGCACTTAAGAATCATTTGATATTACACACCGGACTAAAGCCTTACTCCTGTGACTTTTGTGAGCGCACCTTTGCTACTGGTTCCAATTGTCGCACGCACAAGAGAAAGACGCATCCTGAAGAGTTGGCAGCGCAGGAAGCAGCCGGCGGAGTTAAACCAGTTAATCGGAATATACCAAATCTGGCGGCGCTAAAAGCATTCACCAAAAACAATGATAATTTGTCGCCGGTGTCCTGCAAACAAAGTGGCTCTTTTGCTTTTGGCAAGAAACCCAAACCCATTATAGTTAACACGGTCAATAAAGCAGAGGCAGAGACCAACGCAACAGCAAGTGGCTCTTTTGCTTTTGGCAAGAAACCCAAACCCATTATAGTTAACACGGTTAATGAAGCAGAGGCAGAGACCAACGCAACAGCAGCGCCGACAGAATCCAGCACATCCACAATAGATATCTATAATCATATAATAAAGCAAACGGCGGACACAGCGGAGAAGAAGCTATTGTCGAATTCCTTCAGTGCACAGCCAATTATAACTATGAAAGTGGTGCTCCCAAATAAGAAGCCAACAGTCGTAAGGAGTTCACAGTTTAAGTATTAG
Protein Sequence: MAQQYASNWHLWCRLCAKDDVRGNINVFLKIEQIPGDELSSFSSAAAGSDLELATAIGKYFWVNISRGGDLPEMICTDCLQVVTSLINLSKRITRVQKLYYVLQNMSKQEEININELRIRFGVQDENQLHTEEHYVDEKPQLNEQGLLEETFELQNPLSPQLPNQNEVITAKRHAFNNCTTKELLDEDTAKQLEEDEELEEGNGNAIADDDAASEFSGANSDDSQNPANQKQRLQSFKATKAQPHQCTECPRAYAHYTTLRRHIRREHQNSHIPMSSRKIHPCQICGIKFTSPASVLSHFQYMHQDRRPARSIICEVCGVSVHTISLLKEHMLRHTDETPFECDECKKCFKSAHRLKCHKEQTHDPHKYKCSECGKQLSSRATLNGHRLVHTDQMEHKCDYCGKAFKRTNALKNHLILHAGLNPYSCEFCKRTFNNRSNYLTHKKKLHPQELAAQEAAGGGKPVNHNIPNLAALQALTKNKDNLSPSVATKQTMAQQYASNWHLWCRLCAKDDVRGNINVFLKNEQIPGDALSSFSSATGSDLELATAIGKYFWVNITRGGDLPEMICTDCLPVVTSLVNFSKRITRVQKLYDVLQNMSKQGQINIDELRIRFGVQDENQLVTEEHYVDEKPQLNEQGLLEETFELQNQLSPQLPNQNEGIMAKRHAFKDCYTEELLDEDTAKQLEEDEELEEGNGNAFADDDAASELSGANSGDSQNPSNQKQRPQSLKATKAKPHQCTECPRAYTHYTTLRRHIRREHQNSKELFMCKECDKEFCSRDSLDRHMQSHMRIHIPMSSRKVHPCQICGKKFTSPASVLSHYQYMHQDTRPARSIICEQCGVSVYTTSLLKEHMLCHSDETPFECDECKKCFKSAHRLKRHKQQTHDPHKYKCSECGMQLNSRETLNRHRLVHTDQMEHKCDYCGLNPYSCEFCKRTFANGSNYRTHKRKSHPEELAAQEAAGSGKPVNHNIPNLAALKALTKNKDNLSPSVATKQTMAQQYASNWHLWCRLCAKDDVRGNINVFLKNEQIPGDALSSFSSATGSDLELATAIGKYFWVNITRGGDLPEMICTDCLQVVTSLVNFSKRITRVQKLYYVLQNMSMQEQIKIDELRIRFGVQDENQLLTEEHYVDEKPKINEQGLLEETFELQNPLSPHLPNQNEGITAQSNALKNCATEELLEVNIEEQLEEDEELEEGNGNAFADDDAASEFSGATSDGSQNTANQKQRPQGLKNHKEKTHQCTECPRAYAHLTTLTRHIRLDHQNAKELFNCKDCDKEFRTRILFDRHMQSHVPKVHPCDICGKQFTRSASLRYHYQYMHQDTRPARPIICEQCGVSVHTTSLLKEHMLCHTDETPFECDECKKCFKSAHRLKRHKQTHDPHKHICSECGMQLNSRDTLNRHRLVHTDQMEHKCDYCGKAFKRAKALKNHLILHTGLKPYSCDFCERTFATGSNCRTHKRKTHPEELAAQEAAGGVKPVNRNIPNLAALKAFTKNNDNLSPVSCKQSGSFAFGKKPKPIIVNTVNKAEAETNATASGSFAFGKKPKPIIVNTVNEAEAETNATAAPTESSTSTIDIYNHIIKQTADTAEKKLLSNSFSAQPIITMKVVLPNKKPTVVRSSQFKY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -