Camo001325.2
Basic Information
- Insect
- Chymomyza amoena
- Gene Symbol
- bab2
- Assembly
- GCA_037043745.1
- Location
- JBAMAX010000324.1:78962-80650[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-17 3.9e-14 52.5 0.0 1 43 58 101 58 103 0.95 2 2 4.8 1.2e+04 -3.4 0.1 3 16 149 162 148 166 0.81
Sequence Information
- Coding Sequence
- ATGATCGAGACTGGTGGACATGGTTGGATGGGCCCCGCAGCGGGCACTTCTGTGGCGGCAGACAGCTACCAGTACCAACTGCAATCGATGTGGCAAAAGTGCTGGAACACTAACCAGCAAAACTTGGTGCAACAGTTGCGTTTTCGTGAGCGCGGTCCGTTGAAGTCCTGGCGACCGGAAGCCATGGCAGAAGCCATTTTTAGTGTGCTTAAAGAGGGCCTTTCACTGTCGCAAGCGGCCCGCAAGTTTGATATACCCTATCCAACATTTGTGCTTTATGCGAATCGAGTGCACAATATGTTGGGGCCCTCTTTAGACGGTGGCACTGATCCGCGACCTAAGGCACGGGGACGCCCCCAGCGCATACTTCTGGGCATGTGGCCCGAAGAGCTCATACGTTCGGTAATTAAGGCAGTCGTGTTTCGTGATTATCGCGAGATCAAAGAAGAAATGGGCGTAGCCGCACATCAGTACGCTAATGGACAGGCGCATATTTCAACACCCTTTGGTCCTGGCGTTAGTAactcagctgctgctgcagcagctgcaaacGGCTATCATAATGTTGCCAAAATGGCCGCTCAGAACGCGTCTTTAGCTCCCCCCGATTCCAACAGCCCGCTCTCCTCCATGACTGAGACCTTGCGCCGACAAATTCTCTCTCATCAGCAACAGTCACCGATGTCACCATCAATGAACATGTACAAGTCGCCAGCATATTTGCAGCGTTCCGAGATCGAAGATCAGGTATCCGCAGCAGCAGTTGCAGCCGCCGCCGCCAAACACCAGCAAAGCGATCGACGTGGCTCGGAAAACTTACCAGACCTTAGCGCGCTTGGCCTAATGGGTCTACCAGGGCTTAATGTAATGCCTGCACAAGCGTCACATCAGCGAAACTCGAGCAACGCCGGTAGCGGTTCACAGACGCATCCGAATGCTTCTAACTATGCACGAGAACGGGAGCGTGAACTATCGCGTGATCGTGAACGCGAGCGTGAATTGAAGGAAGCTATGCAGTCCCGTCATTACGGCAGCCAATCTCGTGGCTCCTCTTCGTCACTTGGTACCAAGCCAAATGTTGCACACGAGCGAGGGGGGCATGGTGCTTCCTCAAGTAGGCCAGGTGCCGGATCGCCATATTCGCAGTACGTCAAACAAAAGGAGCATTCAAATTACGCGTTCAACAAGCGGTTTTTGGAAAACCTACCTGCTGGCATAGACTTTGAAGCCATTGCCAATGGTTTGCTGCAAAAGTCTGTGAATAAGAGTCCCCGTTTCGAGGATTACTTTCAGGGGCAGGATATGAGCGAGTTGTTTGCCAACGCAGACACAAGTGTCAGTGCCGCTGCTGCGCCCTATGCGCCAGCGTCTGCTCGTGAATCGTCTTTGATAAAGATAAAGCTAGAGCACCAACAGGCCACGGAGGGGCCACATGAGGATTAA
- Protein Sequence
- MIETGGHGWMGPAAGTSVAADSYQYQLQSMWQKCWNTNQQNLVQQLRFRERGPLKSWRPEAMAEAIFSVLKEGLSLSQAARKFDIPYPTFVLYANRVHNMLGPSLDGGTDPRPKARGRPQRILLGMWPEELIRSVIKAVVFRDYREIKEEMGVAAHQYANGQAHISTPFGPGVSNSAAAAAAANGYHNVAKMAAQNASLAPPDSNSPLSSMTETLRRQILSHQQQSPMSPSMNMYKSPAYLQRSEIEDQVSAAAVAAAAAKHQQSDRRGSENLPDLSALGLMGLPGLNVMPAQASHQRNSSNAGSGSQTHPNASNYARERERELSRDRERERELKEAMQSRHYGSQSRGSSSSLGTKPNVAHERGGHGASSSRPGAGSPYSQYVKQKEHSNYAFNKRFLENLPAGIDFEAIANGLLQKSVNKSPRFEDYFQGQDMSELFANADTSVSAAAAPYAPASARESSLIKIKLEHQQATEGPHED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00339068;
- 90% Identity
- iTF_00338255;
- 80% Identity
- -