Basic Information

Insect: Chymomyza amoena
Gene Symbol: -
Assembly: GCA_037043745.1
Location: JBAMAX010001359.1:232380-233936[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 2e-16 4.9e-13 49.0 0.0 2 44 348 390 347 391 0.94

2 3 0.048 1.2e+02 3.0 0.0 28 37 421 430 420 436 0.88

3 3 3.8e-19 9.3e-16 57.7 0.0 2 42 457 497 456 499 0.95

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	2e-16	4.9e-13	49.0	2	44	348	390	347	391	0.94
2	3	0.048	1.2e+02	3.0	28	37	421	430	420	436	0.88
3	3	3.8e-19	9.3e-16	57.7	2	42	457	497	456	499	0.95

Sequence Information

Coding Sequence: ATGGGCCATTCATCCACCATTATGGATATACAACGCGCTTTGCGCAATGACAACGAAACTTGTGAAGTGACGCTAGTTGCAAAGGATGGCATCAATGTACGGGCGCATCTATTTGTGCTCAGCACTTGCAGCGATTTAATGCGGAATTTGCTTGTGGACGTTCCAACAGGTCATGAGGCTACCATTGTGTTACCCGATATACGAGGAAGCCTTCTTGAGAGCATGTTATCGTTTATATACATGGGTGAGACCAGTCTACCCTCCTCCTGTCTCACAGAATTCCTTGAAGCTATCAGCTTATTGGGCATTAAATCGGCCATCAGTTTCGAGTGCAACACAAGTGCTAATAATAATGTAAATGTCGTTGCCAGTAACGTCGCTATGGAGGCGGCCAAGTCTATTAGTGGCTTGCAAATTGCACAAACCGAGCTACTGGAGGAAGATGAGGAGGACCCCAATGCTGTAGTAGCCAAACTGGCCGTTTCCAATTCAGTTTTATCTGGCCAACAACAAATACATCAGACACAAGCAACGCGATCGATAGAATATATTGATGTTTACAATGATACCCCAAAAATTACCTATTCCATTGAGCATATGAGCGACACACCAAATGGCAATCAATATATACTGACCGAAAACACGGGCACCTTCACTATCACACAATCGACTAATCCCGTGACCAAATTGGATGTCTCTACGGGCGCTGTGTCGGAAGTAGGGCACTCCAATGTATCCCAAGGTATGGTTGAAGATGAAGCGGAAGGCGAAACCACCGAAGACGTAGAGGAATCAAATATACCCCTTATCGAGGAGGAATATATTACGGCGTCTGATCCTCTTATAGATATGCATACAGAAGTTGATATAGGCAACGATGACGATGGCATGCCAGAAGGCGATGTTGATGACGATATGCTTGAAATGAAACCTCGGAAATCCGAGTTGAAACTGAAAGCACGTAAATTGATGAAAAGGCTTACTACCAAGCAGCAGCATCATTTTACTGCGCTCAAAAGCGGGATTAAGACGGCCAGCGGAAATGATGCAATTGAATTAGCGGCACAGGCTGTACTCCATGAGGGGCTAAGTCTGCAAAAGGCTGCGGATCGTTATGATATATCTAAAACAGTTCTTTGGCGACGTGTCCGTACAAATCCGGATTATATGAAGCACAGTCGGGAAAAGCCTTCACTAACAGAGGCCTACGAGCGATTGAAAAACGGCGATTCACTGAAGAATATAAGCCAAGATCTGCAAATTCCCATGTCTACATTACATCGGCATAAGGTTCGCTTGGCCAGCCAAGGCCGCCTGCCGGATTTTGTATCCTGTCGAAGACGCGACACGACGCCAAAAGATGAATTACGAGACAAGCTCGCCAAAGCTGTACATGCTTGTTTAAACGATGGAATGTCACAGAATCATGCGGCTAATCTTTTCGAAATTCCCAAGAGCACTTTGTGGCGACACTTGCAGCGGCGTGTAGCCGAATCGGGACAGAAAGTTAAACGTGAGGAAGAGGAGCAAGACGATGAAGATGAGATGCTCAATTAA
Protein Sequence: MGHSSTIMDIQRALRNDNETCEVTLVAKDGINVRAHLFVLSTCSDLMRNLLVDVPTGHEATIVLPDIRGSLLESMLSFIYMGETSLPSSCLTEFLEAISLLGIKSAISFECNTSANNNVNVVASNVAMEAAKSISGLQIAQTELLEEDEEDPNAVVAKLAVSNSVLSGQQQIHQTQATRSIEYIDVYNDTPKITYSIEHMSDTPNGNQYILTENTGTFTITQSTNPVTKLDVSTGAVSEVGHSNVSQGMVEDEAEGETTEDVEESNIPLIEEEYITASDPLIDMHTEVDIGNDDDGMPEGDVDDDMLEMKPRKSELKLKARKLMKRLTTKQQHHFTALKSGIKTASGNDAIELAAQAVLHEGLSLQKAADRYDISKTVLWRRVRTNPDYMKHSREKPSLTEAYERLKNGDSLKNISQDLQIPMSTLHRHKVRLASQGRLPDFVSCRRRDTTPKDELRDKLAKAVHACLNDGMSQNHAANLFEIPKSTLWRHLQRRVAESGQKVKREEEEQDDEDEMLN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00339288;
90% Identity: iTF_00338513;
80% Identity: iTF_00336075;