Cfes001550.1
Basic Information
- Insect
- Chrysotoxum festivum
- Gene Symbol
- prdm10
- Assembly
- GCA_963931855.1
- Location
- OZ007554.1:10684940-10693054[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00032 0.084 15.1 0.4 2 23 446 467 445 467 0.96 2 11 0.0013 0.35 13.2 0.8 2 23 502 523 501 523 0.93 3 11 0.04 11 8.5 4.1 1 23 543 565 543 565 0.98 4 11 0.00019 0.051 15.8 3.3 1 23 572 594 572 594 0.98 5 11 0.018 4.7 9.6 1.9 1 23 599 621 599 621 0.98 6 11 0.96 2.5e+02 4.2 6.0 1 23 627 650 627 650 0.97 7 11 0.024 6.3 9.2 2.3 1 23 655 677 655 677 0.98 8 11 0.0013 0.35 13.2 3.0 2 23 684 706 683 706 0.97 9 11 6e-05 0.016 17.4 1.1 1 23 760 783 760 783 0.95 10 11 0.012 3.3 10.1 2.1 1 23 805 828 805 828 0.94 11 11 0.063 17 7.9 5.9 1 23 859 882 859 882 0.97
Sequence Information
- Coding Sequence
- ATGAGTGAGAGCTTAGAAAACTCAGAATCCCAACACAATTATGTTTATGGAGGATTTCAAAGAATCAGTTCCTATGACCCTAACATGTGTACAACAGCGGCGCGTTTTAGCCCATTTTATGATAAGGCTAATGTCCCAAAGCCAGCCAAAGAAAACACGCTGATCTATAAAAGTCTAATAGGTGTGAAATCCCCCAACCAAAATGAGGACAATAGTTCTAATAGTCTCAACAATACGGTAGACACATCAAAAGTTGTTGATCCACCATACCTTGCGTACAATAGTGATATATCAGTTGGCCATCAAAGTGCTAACAGAGAAGTTTTGGTAAACAATGGAATACCTAGTACAGTTGAATTTAATGAACAGGTTATAGGAGGTGGTGGTGAAATAGAAATTGATTACATTCAGCAAATTGCCCATGCTAATGATGAGGTGACTAGAGAACCTATAGCAACTCGTATTGTCATACATCGCTCACCAAACGGTCATTTGTATCAAAACTTCTTTGTAACAAACGAAGACGGAGGAACTCCAGAAGAAGTTGTTGAGCTTATTCCCATAGATCCTTCTGATGTCACTCGTTTGGGTGATGAAGAAGATGATAACTATTCCCTACAACCGTACCCATTCCCAACTGAAAGTCACATGGATGGTATTGAATCGCATCATCCTATCAATAATATTGTTGAATACGAAGAAAATGCACAGCGAATAATCACAACAGAAATGCTAACCAGAGAACAACagagaattttattagagacCACTATGTCACCATTGCTGGCTGCGGTAAATGATATTACGCAaagagacaaacaatttttgtctTGTCTTAATCGTCAAAGTGTAGAAGAACATCTTTGTGATGATGACAACAATGAAATCAGTGCACATAAAACAGATTCCTCAGAAGATGACGATGATTATGaaCCATCTGTTTACGCTGCGAAAGAAATTCGGCAAAGAACAAAGTTTGGTCCATTCGAGGGAGAAATTCGTTTTACTAATGACATTTTTCTAAACATATTAAGATCTCAGCATCCGCGCCACTATCCTCTTCTGTTAGttggaaaatcaaaaattctCATCGTTACAAATGAAAATACATCCAATTGGATGCGATTTGTTCGTCTGGCCAAAACTTTCACCgaacaaaatttgcaaataaTCGAAGAAAATGgtcgaatattttttaaatgcaatcgtGATATTCATCCAAAAGAAGAACTTCGAGTTGGCTATCATAGTGCCTATgctgaaaaatataatttgtcaATATTGAAACCGTCCATTGAGGACACTCAAAAGAAATACGAATGTGATAATCCATGGATGTGTTTTGAATGCGATCAAAGATTTCCAACTTCACAAGAAATGCAAACACATTTGAAAGTTCATGATTTAGAAGATGCATCATGCATTATAtcgaaaagaaaaatcaaaagaaaaagaaaaagaacgaaattcaagaaaatatccGAATTGCCTAAGAACTCGAGTAGATGTTtgatttgttttaaggttttcaTGACAAatgcaagtttaaaaaaacactttGCTCTACATATAGctgcaaataaaacaaagacCGAAGCAgtaaaattaacaacaaaacGTTCGgtgcataaatgtcaattgtgCTCGAAAAGATTTCTTTCCGAAGATAGACTCAAgTCGCACGAGCGGACCCACTCCGATATTCATAAACCCCATAAGTGTACTCACTGTGACCAACGTTGTGCGACGCCAGCAGCTCTTTCGGCTCATGTCCGTAGTCACACGAATCGTCTTTATTCATGTGTTTTTTGCcaagaaacttttaaatatgttctggattttaaaaagcatgTTCTTAAGCATAGAGTTGATGGCCTCTTCGTCTGTTTTCATTGTAAAAAGAATTACAAAGAATATCATATAGTTCGGAGACACATACGAATTTTCCATCCAGCTGTGAAATATCCCTGCAACGAATGCGATCGTTTGTTTCTACATATGAGCTTCTTGCGGCGTCACAAAGCCACTCATGCTAAGAAGAAAACTATTCAGTGTTCAAAGTGCGAGCAAAAATTCGAGAAAAGATTCGAACTAAgacaacatacaaaaactttccataaagtgaaaacaaaaatgaagaagCAACCagttgtaaaagaaaaaaaatctgataaaAGTGACCGTTTGCCGTATCAAAAGCTTATTCCAAAAAAAGATGAAGCTGCTAAGAACACTAGAAGCAATTCACCACTATCAGAAAATTTCTATCAGTCCCAATTTAAATGCGAAGAATGCAAACTAAGTTTCAAGCGACGCGGAATGCTGGTTAATCATTTGGTGAAAAGGCATCCAGAACAGAATATTGATTCAATTGAAGAGTTAAATCAACCCATTGTTAAAATTCAGACTATGTTCAAATGTCCTCATTGTCCGAAACTGTACAAGAACAATGCAAAACGAAAAGGTCATATTGTGAAGAATCATCCAGGGATGGAGATTCCACCTTCATTTCGTAAAAATCCCGTTTTAATTGATCCGAACGTCCAAACTGTGGGATGCATTAAGGCAGATGTCCATAAGTGTCATTTGTGTTACAAGCAATACGTTTCGAGAATGCGTCTTATCACACACTATCGAAAGGCTCATATGAACGAAAGTATACCAGAAATGCAACACAAGGACATTCAGCTTCAAAATCTAATCGAAGAACCATGTATGGAACCAGTTTTGGATATTTACAGACAACCAGTTTCACCAGAAAATAAACTGTTAAAACTATCTTCCGCAGCACTTGAATTGTCCAGCATTGAAGATAGAaagtattttgattttctcaatgaaaaatCAGACACAACAGATATGGGCAATAGAAATAGCTATAAAATCGAGGAAAATGAGTTCGTTGAGAGTTCATCGAATGCAGATTTGAATCGATTACCTGAGTTATTTGAAGAGTCAATAACAtgtatttaa
- Protein Sequence
- MSESLENSESQHNYVYGGFQRISSYDPNMCTTAARFSPFYDKANVPKPAKENTLIYKSLIGVKSPNQNEDNSSNSLNNTVDTSKVVDPPYLAYNSDISVGHQSANREVLVNNGIPSTVEFNEQVIGGGGEIEIDYIQQIAHANDEVTREPIATRIVIHRSPNGHLYQNFFVTNEDGGTPEEVVELIPIDPSDVTRLGDEEDDNYSLQPYPFPTESHMDGIESHHPINNIVEYEENAQRIITTEMLTREQQRILLETTMSPLLAAVNDITQRDKQFLSCLNRQSVEEHLCDDDNNEISAHKTDSSEDDDDYEPSVYAAKEIRQRTKFGPFEGEIRFTNDIFLNILRSQHPRHYPLLLVGKSKILIVTNENTSNWMRFVRLAKTFTEQNLQIIEENGRIFFKCNRDIHPKEELRVGYHSAYAEKYNLSILKPSIEDTQKKYECDNPWMCFECDQRFPTSQEMQTHLKVHDLEDASCIISKRKIKRKRKRTKFKKISELPKNSSRCLICFKVFMTNASLKKHFALHIAANKTKTEAVKLTTKRSVHKCQLCSKRFLSEDRLKSHERTHSDIHKPHKCTHCDQRCATPAALSAHVRSHTNRLYSCVFCQETFKYVLDFKKHVLKHRVDGLFVCFHCKKNYKEYHIVRRHIRIFHPAVKYPCNECDRLFLHMSFLRRHKATHAKKKTIQCSKCEQKFEKRFELRQHTKTFHKVKTKMKKQPVVKEKKSDKSDRLPYQKLIPKKDEAAKNTRSNSPLSENFYQSQFKCEECKLSFKRRGMLVNHLVKRHPEQNIDSIEELNQPIVKIQTMFKCPHCPKLYKNNAKRKGHIVKNHPGMEIPPSFRKNPVLIDPNVQTVGCIKADVHKCHLCYKQYVSRMRLITHYRKAHMNESIPEMQHKDIQLQNLIEEPCMEPVLDIYRQPVSPENKLLKLSSAALELSSIEDRKYFDFLNEKSDTTDMGNRNSYKIEENEFVESSSNADLNRLPELFEESITCI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00894304;
- 90% Identity
- -
- 80% Identity
- -