Ccae037574.1
Basic Information
- Insect
- Chrysops caecutiens
- Gene Symbol
- -
- Assembly
- GCA_963971475.1
- Location
- OZ020569.1:38885949-38901790[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.048 12 8.0 1.0 3 23 289 311 287 311 0.92 2 15 2.7 6.7e+02 2.4 1.5 1 22 438 459 438 462 0.90 3 15 0.006 1.5 10.8 0.1 2 20 518 536 517 538 0.93 4 15 0.0038 0.94 11.4 1.9 1 23 555 578 555 578 0.95 5 15 0.058 14 7.7 0.7 1 22 583 604 583 607 0.89 6 15 0.028 6.8 8.7 0.3 2 23 624 646 623 646 0.95 7 15 0.00051 0.13 14.2 0.1 3 22 653 672 651 672 0.93 8 15 0.016 3.9 9.5 4.9 2 23 751 771 750 771 0.95 9 15 3.8e-06 0.00094 20.9 0.6 1 23 777 800 777 800 0.91 10 15 0.0037 0.92 11.5 0.5 1 15 818 832 818 835 0.88 11 15 0.33 81 5.3 0.1 1 23 896 920 896 920 0.90 12 15 6.9 1.7e+03 1.2 0.3 1 18 926 945 926 945 0.91 13 15 0.54 1.3e+02 4.7 7.8 1 23 1081 1103 1081 1103 0.95 14 15 3.8e-05 0.0093 17.7 1.5 1 20 1109 1128 1109 1130 0.95 15 15 1.6 4e+02 3.2 0.1 1 14 1140 1155 1140 1165 0.84
Sequence Information
- Coding Sequence
- ATGCTTGAAGAAGatttggaagatacacatttATGTATTAAATGCAGTACAACGATTGTAGGACTCGAGAATTATGTTCAGCACAGAAAGAATCATTGCGCTACCAAAGCTCCTAATCCCATTAACAGGGACATTGTCCACATGGATCATCCTTACGGCACGTTTGATTTCTCAGAGCCGACGAACTACCACAAGACATCCGAAGAAGTTGAGAAAGGTGCCAAATCCTTGTCGGAATCCTACGATCTTCCATACGATTTGGGAGCCGATGTATTCTTTTCTTCTTTAGAATTACAGAGTAGCTCAAAACGATCGCTTCAACCTTCTTCGAGTACAGCTGTGACAACAAACAAACTTCTCTCTGGAAAAGTCCTAAGTCGAAAAGCAAATACTCCTCGTCCTGCGAATGCAGAACAAGATGATGAGTGGATCGCAACACAAAACAATTCCGAGAACTTGATGAAGGCTGTAAGGCACATAAGTGGGACCAAAAAATGCGacaatttgttcaaaataatCCCGTTCCATCATGACTCCCCAGAGCCGTCTGATGATGAAGATGacgaagatgatgatgatgatgatgatgatgatgatgactatGACAGTCCTTCACAAGCTCAGACTACAGGAGGTAAATGGAAACCTGAAACTAGCCAACCAACTATTAACGGTTCATCACCACGAACGTCTATCCAATGGTTTGAACGATACACTGCCCCACAAGATCAAGATGACTTTGAACAGGATCTCAATCCACCACCAGGACACACGAAAGGGAAATGGGTACCTGGGACAAAAATAACTAAACTTGATTACAAGGAAGACGTGGAAATCGAGCGAATATACTCAGATCAGTTTTGGTGCAACACATGTAACAGAAAGTTGGCGTCAAAGCTTCTCTACGAAAGACACATGAAATCCAGTCTTCATTTGAAGCGTTCGAAGCCCGAAAGGGAACTGGAACAGGCGTCGCAGGAACTAAAAACTGACCGGTTCTCCGAACGTGTCAAGAAACCATCGATTTTCTTGAACCAAGAGATCTACTTCAGCTCTGAAAAATCCGTGCCACCGTCAACCAACAAGAAAGCACAAGGCGATGAAACTGCACCAAAAAGCCCGCTAGTCAATCAGAAGAGAATTCGCCGGAAGTTCTACACAAAATGCGAAACCTGTAAGACACGTCTACCGAAGCACTTGATGGGTAAGCATTTGATCTCACACTATCACTACCGTCGAATGGTTTGCAATCCTACAGGATGTTCTGATGTCATTCTTGATAACATGGAAAAGATAGTCCATCAGATGCCATTTCAATGTCATCCTTGTCGGTACTACTTCAACACAGAAGAAAGATTCTTAGCACATTGGAACTCTGAGGAGCATTGCATAGCATCAAATGGACCTGGACTGTTCTGGTGCTCGTTCTGTAAGTTTGACTGTCGAGACAACGTTAACATGGGGTTCCACTTGGTAGGAACAGCGCACAAAGAAGTAGTCTTAGCCATCAATCGATCTGTACCAATAATTGTTAGGAAGAAATGCATCATAGAATGTGAGAAATGCTTGAAAATCTTTCGGTACAACATCGAGCTGAGGAAACACGCTCAACTCTGCACGTTGGTACCCACAGGAACTGCTTCGGATGAGTACCAATCGAAATTTGTCTGCGAAAAATGTAACGAGCGCTGCAAGTCTAGACTTGCTCTTCAAAAACATGAGCTCGTCTACCACAATGAATTGAGATACTTCTGCTCGGCGTGCAAACTGACTTTTGAGACATCTGAGGAAATTAAGAAACACAGAGCTTCAAGTGATCACAAAATTAAGtcgaaatttaaaaacaaaacaacagTTTTGTTGGAGAAGAAATGCAAAATCTGCGGAAACATACTCAAAAGCATACAGGAGCTCAAAGAACATATCCAAGGAAAACATCCACATGAGAGGCACTTGTGTCCAATGTGTGGTGAATCTTTTGTACTTCCTCAAGAACTTAGCAGACACGTGCGCaagaaaatttgcatttccTCAATGATGGAAGACGGGCAAATACACCAGAGTAGTGATCACTTGAATGAACCGAAGAAGGAGGAAACCGTGCAAATCCCGGTGCATAGTGTATCATGCGAAGATCCTTTGAAGCTTTGGAACTGTGATAGATGCAGATTTAGGACGCACATCCAGTCCGAGTTTTTATACCACGGCACCCTGCACAATGTAAGACTGACGAATTCACGTGAAAAGCTTCCTTGTCCCATATGTAACAAAATGTTCCGTAAACATTCGCTACGATGTCATCTGCGTCAACATACAAATGAGAAAGTTTTCTCATGTAAAATATGTCCAATGAAGTTTTCTCGAAAGTACAATCTCAAAGCTCACGTGGTGAACGTTCATGAAAAGACGAGAATTTCGAATGCTGCAGGTGAAAGAGAATCCGAAAATTCTTATCAATGTGATGTTTGTGGGAAAAATTTCAGCAAAAACAACAACATAAGAACGGAAAAATTCCATAGAGAGGAAGGAGCAGGAAAGGGAAGTATTGGACCTAGAATAGAAGTTAAGGGCATAAAAAAGGAGTATTATCTTGTATCTGGAATAACATTAGATACAAATATATGGGCTGTTCTACTACAATCCCTCAAACAACATGCGGACACACATAACGAACGTGATAACAAATTTCGTTGTCCAATTGAAATGTGCATCTTTATTGGCAGAAATGCATCAGACCTCCAGTCGCACCTGGCGACTCATTCAACTGAGAAGAACTTCAAGTGCGAGTTTGACGGATGTGATTACGCTGGAAAGACGCTGACTCTACTTAAAAGATCTTCTCATGAATGCGCAATTGGTATGTACCATTTAATGCAGTTCTACGCCATAAATATCTGTTCAATGCCACTCCATGAATGGCATGGGCATGAAAATTGTGAAGATATCATGATAGGTAACAACCCAGTCACTAGTCAAGGTACATGTTCACAATTCGATCATGGAGATGATGGCGATGATGATGCCAACGATTCTGACAAAGGCGAAGACAACGACATCGACAAAAACATCACAAAAGCAGCATCAACAGCAGCATACCAGATATACCATTACCATATATTCCAGGTATTCCACTCACATACACATCTTGATTGGATGGATTCATTGATTGGTTACCGATTTGCCTACCTTGTTGTTTGGCCGCAATGGCATACAAAAAAGCATGAGCCAGCCGGTGATGAATACCATTGTCCACattgtaaattcaaaaccCGAATTCGAGGACATCTCAAGCGCCATTCCTACATCCACACTAAGGAGAAACCGTACAAATGTCCACACTGTCCTTACTCGTGTAATAATCTTGAGAACTTGAGGAAACACGTTCTTGGTACCAAGCTTCATCctggaaaattcatttatgaatGTAAGCTTTGTaacaaagacaaaattttcaaaactaattCTCAAAGAATGTATCGCGTTCATGTTATTCTTCTTCACAAGGCAGAGAGCAATTTGGATGAAATTTTGTCACTCCGACCTAGTTAG
- Protein Sequence
- MLEEDLEDTHLCIKCSTTIVGLENYVQHRKNHCATKAPNPINRDIVHMDHPYGTFDFSEPTNYHKTSEEVEKGAKSLSESYDLPYDLGADVFFSSLELQSSSKRSLQPSSSTAVTTNKLLSGKVLSRKANTPRPANAEQDDEWIATQNNSENLMKAVRHISGTKKCDNLFKIIPFHHDSPEPSDDEDDEDDDDDDDDDDDYDSPSQAQTTGGKWKPETSQPTINGSSPRTSIQWFERYTAPQDQDDFEQDLNPPPGHTKGKWVPGTKITKLDYKEDVEIERIYSDQFWCNTCNRKLASKLLYERHMKSSLHLKRSKPERELEQASQELKTDRFSERVKKPSIFLNQEIYFSSEKSVPPSTNKKAQGDETAPKSPLVNQKRIRRKFYTKCETCKTRLPKHLMGKHLISHYHYRRMVCNPTGCSDVILDNMEKIVHQMPFQCHPCRYYFNTEERFLAHWNSEEHCIASNGPGLFWCSFCKFDCRDNVNMGFHLVGTAHKEVVLAINRSVPIIVRKKCIIECEKCLKIFRYNIELRKHAQLCTLVPTGTASDEYQSKFVCEKCNERCKSRLALQKHELVYHNELRYFCSACKLTFETSEEIKKHRASSDHKIKSKFKNKTTVLLEKKCKICGNILKSIQELKEHIQGKHPHERHLCPMCGESFVLPQELSRHVRKKICISSMMEDGQIHQSSDHLNEPKKEETVQIPVHSVSCEDPLKLWNCDRCRFRTHIQSEFLYHGTLHNVRLTNSREKLPCPICNKMFRKHSLRCHLRQHTNEKVFSCKICPMKFSRKYNLKAHVVNVHEKTRISNAAGERESENSYQCDVCGKNFSKNNNIRTEKFHREEGAGKGSIGPRIEVKGIKKEYYLVSGITLDTNIWAVLLQSLKQHADTHNERDNKFRCPIEMCIFIGRNASDLQSHLATHSTEKNFKCEFDGCDYAGKTLTLLKRSSHECAIGMYHLMQFYAINICSMPLHEWHGHENCEDIMIGNNPVTSQGTCSQFDHGDDGDDDANDSDKGEDNDIDKNITKAASTAAYQIYHYHIFQVFHSHTHLDWMDSLIGYRFAYLVVWPQWHTKKHEPAGDEYHCPHCKFKTRIRGHLKRHSYIHTKEKPYKCPHCPYSCNNLENLRKHVLGTKLHPGKFIYECKLCNKDKIFKTNSQRMYRVHVILLHKAESNLDEILSLRPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -