Basic Information

Insect: Chrysops caecutiens
Gene Symbol: -
Assembly: GCA_963971475.1
Location: OZ020567.1:1623209-1625885[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 9.8 2.4e+03 0.7 1.7 3 23 234 260 232 260 0.63

2 12 1.8 4.5e+02 3.0 1.0 6 23 269 286 269 286 0.97

3 12 0.00022 0.053 15.4 3.8 2 23 322 344 321 344 0.96

4 12 2.4 5.9e+02 2.6 0.2 6 23 429 446 429 446 0.97

5 12 0.001 0.26 13.2 1.5 1 23 452 474 452 474 0.98

6 12 0.00011 0.026 16.3 0.5 1 23 482 504 482 504 0.95

7 12 6e-06 0.0015 20.3 1.4 1 23 513 536 513 536 0.95

8 12 0.0051 1.2 11.0 0.5 2 23 542 563 541 563 0.95

9 12 1.7 4.2e+02 3.1 3.7 2 23 588 610 587 610 0.93

10 12 0.079 19 7.3 1.5 1 23 615 638 615 638 0.96

11 12 5e-06 0.0012 20.5 0.6 1 23 643 665 643 665 0.98

12 12 0.0001 0.025 16.4 3.6 1 23 671 694 671 694 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	9.8	2.4e+03	0.7	1.7	3	23	234	260	232	260	0.63
2	12	1.8	4.5e+02	3.0	1.0	6	23	269	286	269	286	0.97
3	12	0.00022	0.053	15.4	3.8	2	23	322	344	321	344	0.96
4	12	2.4	5.9e+02	2.6	0.2	6	23	429	446	429	446	0.97
5	12	0.001	0.26	13.2	1.5	1	23	452	474	452	474	0.98
6	12	0.00011	0.026	16.3	0.5	1	23	482	504	482	504	0.95
7	12	6e-06	0.0015	20.3	1.4	1	23	513	536	513	536	0.95
8	12	0.0051	1.2	11.0	0.5	2	23	542	563	541	563	0.95
9	12	1.7	4.2e+02	3.1	3.7	2	23	588	610	587	610	0.93
10	12	0.079	19	7.3	1.5	1	23	615	638	615	638	0.96
11	12	5e-06	0.0012	20.5	0.6	1	23	643	665	643	665	0.98
12	12	0.0001	0.025	16.4	3.6	1	23	671	694	671	694	0.97

Sequence Information

Coding Sequence: atgactgattTCTTGGATATGTGTAGACTTTGTCTTGAAAATACATCAAATCTAAgagatattttcatttcaacatcTGAAAATGAATCCATTAGtgacaaaatacaaaaacactTACAACAAAAGATTCATGAAACAGATTTTCTTCCAAAACTGATATGTGATATCTGTGTTACGAAAATACAAGACTTTGATTCGTTTTATCGAATGGTTGAAACGAATCAAACAAGACTACATTCCCTACTTGATAGTGAGTTTTTAGAAGAACCCAATGATGAATTTGCTGTTCTAGGAGGCTATCACACGGACGAGGAAAGTAATAGAGATTATGAAGGAAATCAAGGAACCGCAGAAACTGAAGAAAATCATGATTCGGTGTATTGTGAAGTAATAACAATTGATGAAACTGACTACCTTGAGAATTATGAAACAAAAGAATCACACCATAAGATCGATGTTGATACAAGCTCAGAATTGAATGAAACTATTTCAGTGGAATATCTAGACTATGATTCGATTATTTcggaaatattaaaaaccgaCAATAACGAACACGTATCTTCACCAGAACCAACTGTTGATCATTCTTCTAATAGTAGGGAACAGGATGTCAATTACAgggaaataatgaaaaatggaCATTTGTTAATAACGAGGAAACAACTGATTGCACGCTTACATGAATTTTTCAATCTCACTTGCACACTTTGTGAAGAATCGgcaaaaacaaattcattttcaaaaatgtatgAACTGTTAAAGCATTACACGCAAAATCACCAAGTCCAAGGATATGTTGTATGCTgtaagaagaaatttttcaattacaagGAAATGTCTATGCACTACATTTCGCACGTTGAACCAAAAGCGTTCAACTGTACATTTTGTTCAAGGAAGGTTTTCAATCCATTGTATATGAGACAACACGTGAAATGCCATACTAGATCTAGTTCTCATATTCGTTGCCATTTGTGCAATAAAAGATTCATATCAGAACACTTCCTCAAAGTGCATATCAATAAAATACATCAATATCCAGACAGCTCAGAACCAGAACTCGAACTTGACCAAATAGAACCTCATCCCGACTTCCCTGGAtttccaaaaacaataatgaggaaaggaaaattaatAGTTAAAAGATCAGTTCTAATGGAACTCATGTGTCGatttttcaaatttgaatgtgAGTTATGTGATGATTCTAAGGAACATACAGATTTGACTACACTGTTCGATCACTACAAGGAAGTTCATCAAACGCAAGGTTATGTTACTTGCTGTGGAACTAAATTCGATGTTCGTAGAGCACTTCAGTTCCATATGGCTAGTCATTTAGATCCTGACGTGTTTAAGTGTTCGGAATGTggaaaacaaatgaataatcCAAGTCGGTTGCGggatcattttcaaaaacacaaacCCCATAATGAACGGCCATACTTTTGTCCTGAATGTCCTAAAAGATACAGTTCACGAACAGGTCTAGACAAACATCTAGTTTATCACATTCCAAAAGAGAAGAGAAAGAAGCACATTTGTGAGGAGTGCGGTAAAGTGTTTTTCACCGCTAGTGCTCTAAAAACTCATTTCCGATACTCACATTTGGATCAGAAATTAGTATGTGACAAATGTGGTAAGCAGTGTAAGAATAAGCCAATTTTAATGGTCCACATAGCATCACACGCAAAGAAATCTGAAGAAAAACGCAAATTCCGCCGAAGTGACAGTACACACTTGTCTATGGAATGGGAAACAGAATGTTACATTTGTCATATCAACTTACATGAAAAGACCAGATTGCAAAGGCACATGGAACAAAAGCATGACGGCGTTGTTCACAAATGTGAAAAgtgtaaatatgaaaatagaaaatgggCTCTGTACGCCCGACACATGATTGTACAGCACAGCGAGAAGAAGTTTGTCTGCTATGAATGCGGTCGTTCATTTCGTTATTCATTTATGTTGCGAGATCACATCGAAGTGCATGCTGGCCATCAAAAATATACATGTGAATTTTGTGGAAAGAAGTATGCATCTCTATCGGGATTCTGTCGACATCGTCGTGAGACACATGCCGCAGATTATGAAgaattgaaaacaagaaaacgaGAAGAGCGGTCGAAACTGAGGAGGAAAGTAAAGGTTTGTACTCCTGTCAATAATATTGTATCTAATACCCAAAGATCATTATTTCAGAAGCGTGAAGCCAAGGAATAa
Protein Sequence: MTDFLDMCRLCLENTSNLRDIFISTSENESISDKIQKHLQQKIHETDFLPKLICDICVTKIQDFDSFYRMVETNQTRLHSLLDSEFLEEPNDEFAVLGGYHTDEESNRDYEGNQGTAETEENHDSVYCEVITIDETDYLENYETKESHHKIDVDTSSELNETISVEYLDYDSIISEILKTDNNEHVSSPEPTVDHSSNSREQDVNYREIMKNGHLLITRKQLIARLHEFFNLTCTLCEESAKTNSFSKMYELLKHYTQNHQVQGYVVCCKKKFFNYKEMSMHYISHVEPKAFNCTFCSRKVFNPLYMRQHVKCHTRSSSHIRCHLCNKRFISEHFLKVHINKIHQYPDSSEPELELDQIEPHPDFPGFPKTIMRKGKLIVKRSVLMELMCRFFKFECELCDDSKEHTDLTTLFDHYKEVHQTQGYVTCCGTKFDVRRALQFHMASHLDPDVFKCSECGKQMNNPSRLRDHFQKHKPHNERPYFCPECPKRYSSRTGLDKHLVYHIPKEKRKKHICEECGKVFFTASALKTHFRYSHLDQKLVCDKCGKQCKNKPILMVHIASHAKKSEEKRKFRRSDSTHLSMEWETECYICHINLHEKTRLQRHMEQKHDGVVHKCEKCKYENRKWALYARHMIVQHSEKKFVCYECGRSFRYSFMLRDHIEVHAGHQKYTCEFCGKKYASLSGFCRHRRETHAADYEELKTRKREERSKLRRKVKVCTPVNNIVSNTQRSLFQKREAKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -