Basic Information

Insect: Chrysops caecutiens
Gene Symbol: L
Assembly: GCA_963971475.1
Location: OZ020567.1:451515-458271[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 3.7e-06 0.00092 20.9 1.7 1 23 165 187 165 187 0.98

2 19 0.3 73 5.5 5.7 1 23 193 215 193 215 0.98

3 19 1.6e-07 4e-05 25.2 3.1 1 23 221 243 221 243 0.99

4 19 1.4e-05 0.0033 19.1 0.2 1 23 249 271 249 271 0.98

5 19 0.69 1.7e+02 4.3 0.1 10 23 336 350 328 350 0.90

6 19 0.0017 0.42 12.5 0.4 2 23 371 393 370 393 0.96

7 19 0.069 17 7.5 0.5 1 23 480 502 480 502 0.95

8 19 0.00026 0.064 15.1 0.9 2 23 511 532 510 532 0.96

9 19 0.0076 1.9 10.5 2.7 1 23 540 564 540 564 0.90

10 19 1 2.5e+02 3.8 0.1 1 19 569 587 569 589 0.93

11 19 0.19 47 6.1 1.6 1 23 599 622 599 622 0.98

12 19 0.00098 0.24 13.3 2.9 1 23 654 676 654 677 0.96

13 19 4 9.8e+02 1.9 0.6 1 23 813 837 813 837 0.84

14 19 0.00071 0.17 13.7 4.6 2 23 846 868 845 868 0.96

15 19 0.082 20 7.2 0.1 1 23 874 896 874 896 0.92

16 19 1.1 2.6e+02 3.7 0.2 2 23 904 925 904 925 0.93

17 19 0.96 2.3e+02 3.9 0.4 2 23 1009 1030 1009 1030 0.94

18 19 0.00047 0.12 14.3 0.0 1 23 1040 1062 1040 1062 0.98

19 19 0.0025 0.61 12.0 0.1 1 23 1069 1091 1069 1091 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	3.7e-06	0.00092	20.9	1.7	1	23	165	187	165	187	0.98
2	19	0.3	73	5.5	5.7	1	23	193	215	193	215	0.98
3	19	1.6e-07	4e-05	25.2	3.1	1	23	221	243	221	243	0.99
4	19	1.4e-05	0.0033	19.1	0.2	1	23	249	271	249	271	0.98
5	19	0.69	1.7e+02	4.3	0.1	10	23	336	350	328	350	0.90
6	19	0.0017	0.42	12.5	0.4	2	23	371	393	370	393	0.96
7	19	0.069	17	7.5	0.5	1	23	480	502	480	502	0.95
8	19	0.00026	0.064	15.1	0.9	2	23	511	532	510	532	0.96
9	19	0.0076	1.9	10.5	2.7	1	23	540	564	540	564	0.90
10	19	1	2.5e+02	3.8	0.1	1	19	569	587	569	589	0.93
11	19	0.19	47	6.1	1.6	1	23	599	622	599	622	0.98
12	19	0.00098	0.24	13.3	2.9	1	23	654	676	654	677	0.96
13	19	4	9.8e+02	1.9	0.6	1	23	813	837	813	837	0.84
14	19	0.00071	0.17	13.7	4.6	2	23	846	868	845	868	0.96
15	19	0.082	20	7.2	0.1	1	23	874	896	874	896	0.92
16	19	1.1	2.6e+02	3.7	0.2	2	23	904	925	904	925	0.93
17	19	0.96	2.3e+02	3.9	0.4	2	23	1009	1030	1009	1030	0.94
18	19	0.00047	0.12	14.3	0.0	1	23	1040	1062	1040	1062	0.98
19	19	0.0025	0.61	12.0	0.1	1	23	1069	1091	1069	1091	0.96

Sequence Information

Coding Sequence: ATGCCGCTATCGCTACCATTCGTAGATTTGTACTCAACTCACACTTCGTCCAGTTATTCTCCCTCCATGTCAGAGGAAGCAGCAACACCAAATTCACTCCATCATCAACATCACCTACACCATCACCACCATCATCATGGGGAAAATGATGACGAAGATGATGAATGTAATCGTCTTAGGGATAACGTAAGCGGAAAggattcaaatttaaatggaTCCGCTAATGAAAAATCAACCAACAAAGAAGGGAATGGTGGAACTAACGGTGACATTGACAACGAAGAACGTGAAGACGATGAAGTTGGGTCAAATGACGAAGGTAGAGGGTCAAAACGTCACGGTGACAAACATGCCTCCACCAATCACAAGGAGGTAAGATTTAGAGATGGAAGTGGAGACATAAGGATCCCGTCAAAAATGAGGAAAATCGACAGAGAAACTGGGAAGGAAAAGATGACAGGTGATGGTATTAAAACCACCTCAGATGGTTCCTATCAATGTCAGTTCTGTGATAAATCATTTCCACGTCTTGGATACCTCAAGAAACATGAACAGAGTCACGCTGAACATCTCCCGTTCAAGTGTGAATATTGTGCAAGACTATTCAAGCACAAACGTTCACGAGATAGACATACGAAACTTCATACTGGAGACCGCCGCTATCGATGTCCACATTGTGAAGCGGCTTTTTCAAGAAGtgACCACCTTAAGATTCACATGAAAACACATGACAACCAAAAACCGTTTCAATGCACAGTCTGTAACCGAGGCTACAATACAGCAGCCGCTCTAACTTCCCACATGCAAAACCACAAGAAACAAGCAGCTCTTCTGGGTGGCATACAGCCTTTGAGTTATAGCCCAAGATCAACAGGATCAGCTTCTAGCAATGGAAGCTTTCACAGGAGGCGATACGGAGCTGTGGATTGTAGCCCGAGTCGTATTGAGTTCCGCAAGCAACTTCGTGGTTCCATCATTTCTTGTATTTACTGTACAAAGGCGGATTTCACGTCTGTGGATCAACTGAATGCGCACATCAAGTCAATGCACGAAAACGCTGCAAACAGGGATCTTAACCACACGAACACCAATCATACACTGTTTCAATTATCCTGCGAGTACTGTACCATGAAGTTCCCAAATATTCCGGCAATGTTTCAGCACATGAGGACTACGCATGTTGATCGTTTGGCAAGTCCAAATTCGTACTTCGAGCACTTTAATAGACTAGCTGCATCAGGCACATTCAGTCCTAGACTTGCTGGAAATACTCGTTTCGAAGAAGTCAAGGTAAAAGTAGAAGAACCAAGTCCAAAGCCGGAACGACAAAACGAGccaaaagaagaagaacaagTGAGTCCCACAGATCTCAGTCAGCCGAAGAATCAACCGAGTCCACAAAACACTGAACGGGAATCTCCGAAAAAACCAGGAATGTTTCTCTGCAACCAGTGCAATGCTGGGCTGCCTGATTTTGAGACATTCCGATCACATTTGAAGACACACATAGCTCAAGGTGTAACAAATCTAGTATGTCATCATTGCGGCCTTTCCTTGAGAGATCAGGCTGAATACGAGCGACACGTAATTTCTCATTTCCTCATAACAAACTCCGAGTTCACGTGCGCTCATTCTTGTAATAAAACGTTTACGAAGGTGGAGGATTTACAAAAACACTTATTTGAGACTCATATCCAAAGCATTTTCAAGTGTACATTGTGTACGGATGTCTTCGATACGAAAGTGGCCATTCAAGTCCACTTTGCATGCGCTCATTCGAATGAGAATAAGATCTTCAGATGTTCAGCGTGTATGGAGACTTTTAGATCGGACAAAGATTTTTCAATGCATGTTAGAACAAGACATAGCAACGCTAGTGCTATACAATGCATGTTTTGTCGCGCAGTTTGTTCTTCAGAATTAGAAATGCATTTCCATTTGGCGGCACATGCTCGACAGTTTAGATGTCCATCTTGTCCGGAAACATTCCACGTAGAATTTTTACTAGATCGACACATGCAAACTCATCATTCCCAGAAAGATGGATCAGGATCGATCGGTATCCAATCCAATTCAAGTGGTTCAAGTTACCCATCAGGATTTAATAAGCAACAACAAATcacaaataataacaataacatttTGGACTACCATGCGTTTGCAGGTGGCAAATCACTTTTTCAACTACCCGGAAATAAGTTCTACAATCCTCTACAAGTGGACACTAGTGCTTCGAAGCAATCAGCAGCTTTGATGTATGGTCTTGGCCAAAGATACTTTGAGGCAAACAAAACTCTTATGGATATGTACAATTATCATCATCAAGACAGCAAAAATCCCAACTATTTCCTACCTCcgaattcatttgaaaacaGACGCACTTCGAAGGCGCCACCACAGGAGCAGAAGCAATCGGATCGAACGACAAATAACGGTTTCAGCTGTGGCATCTGTGAGAGAAGTGACTTCCGAACTGAAGCTGAAGTGCATTCTCACAGAAAGGTGGTTCACAACCTCAAAACTGGAGTAAGTCTGAGATGTGCCTACTGCAGTGGAAACTTTAAATCTAGAAGTGAGCTGGAGCATCATATGAAAACATGTCACAACTCTACAGGCAAACACAAGTGTCTCATTTGTGATGAAATATTTCCGTCACCAGCAATTTTAGCTGAACATAAGCTTCAACATTCCAAGGTTGGTCAGTCTGGAAAATGCACACACTGCTCTGCTCCTCTCAACGACGTTGCAGCGTTTAAGGCACATCTCGGGGAGCATAATGCCGAAGGTCAGATACCAGTCCAGTGCATTTGCTGTAGACAAACGCtgaattcagattttgaaattggtcTTCATGCAAAaTTTCACACAAAGTCGTCCATTAGCCCAGAAAATGTTTGTGCTTTATGTTTGGAACCTTTGCCAGTCAATACTGAGACAAGAGTTTGTGAGAAGTGTTGCAGAAAACACAATTTGACATCGAAGTTTAACATGCGGTTTGGAGCAACTCGCACCTACGTGGAAAACCGTTGTAATCTTTGTAAAGTTATCCTACCTCATGCACAAAAGCTTCAGGAGCACTTAGTCGAACATACCTTCGTCGGATGCGAAGAAAGGGGTTATTCCTGTTATATTTGTTCTGCGGTATTTACAGTACCAGCAGGTTTGTTGGCCCATATGAACGAACATGGGCAAAATGCTCGTCCGTACGACTGCAACATTTGCCCGGAAAAGTATTTCTTCCGAGCAGAACTCGAAAACCATTTAATAGAACACGAACTCAATGGTGGAACATCAAATTCCACTGACAAAAATAATGAGCCTCCATCAGCAGAAAAAGAGAGAAAAGTTGAGCAACAAAGTACAACACAATCACAGCCTCAAGCTCAAGTCAAAACTGAAACCACTGATCCTGATGATGAAGAGGAAGAATACATCGAAGTTGAAAAAGTTCCAGAAATTACTAACGCTAACTTGGATCCATCGGACTGCACCAGTAATTAA
Protein Sequence: MPLSLPFVDLYSTHTSSSYSPSMSEEAATPNSLHHQHHLHHHHHHHGENDDEDDECNRLRDNVSGKDSNLNGSANEKSTNKEGNGGTNGDIDNEEREDDEVGSNDEGRGSKRHGDKHASTNHKEVRFRDGSGDIRIPSKMRKIDRETGKEKMTGDGIKTTSDGSYQCQFCDKSFPRLGYLKKHEQSHAEHLPFKCEYCARLFKHKRSRDRHTKLHTGDRRYRCPHCEAAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQNHKKQAALLGGIQPLSYSPRSTGSASSNGSFHRRRYGAVDCSPSRIEFRKQLRGSIISCIYCTKADFTSVDQLNAHIKSMHENAANRDLNHTNTNHTLFQLSCEYCTMKFPNIPAMFQHMRTTHVDRLASPNSYFEHFNRLAASGTFSPRLAGNTRFEEVKVKVEEPSPKPERQNEPKEEEQVSPTDLSQPKNQPSPQNTERESPKKPGMFLCNQCNAGLPDFETFRSHLKTHIAQGVTNLVCHHCGLSLRDQAEYERHVISHFLITNSEFTCAHSCNKTFTKVEDLQKHLFETHIQSIFKCTLCTDVFDTKVAIQVHFACAHSNENKIFRCSACMETFRSDKDFSMHVRTRHSNASAIQCMFCRAVCSSELEMHFHLAAHARQFRCPSCPETFHVEFLLDRHMQTHHSQKDGSGSIGIQSNSSGSSYPSGFNKQQQITNNNNNILDYHAFAGGKSLFQLPGNKFYNPLQVDTSASKQSAALMYGLGQRYFEANKTLMDMYNYHHQDSKNPNYFLPPNSFENRRTSKAPPQEQKQSDRTTNNGFSCGICERSDFRTEAEVHSHRKVVHNLKTGVSLRCAYCSGNFKSRSELEHHMKTCHNSTGKHKCLICDEIFPSPAILAEHKLQHSKVGQSGKCTHCSAPLNDVAAFKAHLGEHNAEGQIPVQCICCRQTLNSDFEIGLHAKFHTKSSISPENVCALCLEPLPVNTETRVCEKCCRKHNLTSKFNMRFGATRTYVENRCNLCKVILPHAQKLQEHLVEHTFVGCEERGYSCYICSAVFTVPAGLLAHMNEHGQNARPYDCNICPEKYFFRAELENHLIEHELNGGTSNSTDKNNEPPSAEKERKVEQQSTTQSQPQAQVKTETTDPDDEEEEYIEVEKVPEITNANLDPSDCTSN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -