Ccae003858.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chrysops caecutiens
Gene Symbol
RREB1
Assembly
GCA_963971475.1
Location
OZ020567.1:19246004-19251358[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.004 0.97 11.4 0.6 1 21 168 188 168 190 0.96
2 15 0.00023 0.056 15.3 0.2 1 23 200 222 200 222 0.98
3 15 1.6e-05 0.0039 18.9 7.5 1 23 228 250 228 250 0.98
4 15 5.1 1.2e+03 1.6 0.8 1 23 371 395 371 395 0.78
5 15 0.038 9.4 8.3 2.3 2 22 401 421 401 421 0.95
6 15 1.5 3.6e+02 3.3 0.5 1 21 464 484 464 485 0.83
7 15 0.006 1.5 10.8 0.1 1 23 645 667 645 667 0.97
8 15 4.2e-06 0.001 20.7 0.3 1 23 676 698 676 698 0.99
9 15 0.00056 0.14 14.0 2.0 1 23 704 727 704 727 0.97
10 15 0.00064 0.16 13.9 2.1 1 23 1065 1088 1065 1088 0.95
11 15 2.9e-05 0.0072 18.1 0.3 2 23 1426 1447 1425 1447 0.97
12 15 0.098 24 7.0 6.3 1 23 1453 1476 1453 1476 0.97
13 15 1.7 4.1e+02 3.1 5.4 1 23 1537 1559 1537 1560 0.95
14 15 0.0062 1.5 10.8 0.4 3 23 1607 1627 1605 1627 0.96
15 15 0.00095 0.23 13.3 4.8 1 23 1633 1655 1633 1655 0.99

Sequence Information

Coding Sequence
ATGGAACGACGCTCCTCCACAACATCAGAATCTTCAGTTGAACCAATGGATCTTGGTCGTACACCAAATACAACagaaaatacaaatgaaataacaacaaattcacttttattacaaacaacagcagcaacaaattcaaatgattCACAAAATTATGAATCAGataatgaagatgatgatATGAATctaataaaacgtgaaaatttacgtcaaaatgaaacaaaattttcaatagttcATCAAGATGAACTAATCAGTTCGAATACGACATctttaagaaagaaatttcGAATAAGTACACCAAATAATAgattaacaaataataataacaaagatcatcataataacaacAGAATaacgacaacaacaacagctaCAGCAGCATctacaacatcaacaacagaCAGAACTAGCAATGAATCAGGATTTGTTGATAGTAGCAGCCATAATTTGAATTCTAGTCCGGAATCTGGAGCAACTAGTGAACATGACGATGTAAAGTATGTTTGTCCAATATGTGAAGTAGTATCAGCAACACCACATGAGTTTACAAATCACATACGATGCCATAATTACTCGCCTAGAGACTCGGAGAATTTCACTTGTCGTATATGTTCCAAGGTTTTATCGTCAGCTTCATCGCTTGATCGACATGTTTTGGTCCATACTGGTGAGCGGCCATTTAATTGTAAATACTGCCATCTAACTTTCACAACAAATGGCAATATGCATCGCCATATGCGGACCCATAAGCAGCATCAACAATATAGAAATAGTAGTAACACATTGAGCACGAATAATGGTGGGTCTGGAAATCATATAAGTAGTGATGGTGGAGGTGGTGGAAATGCTAGTAGTAGCAGTACTGGAACTGGTAGTGCTGGTGGTGATGGGGAAAGCTATGAAAGCGATGGATGTTCAACAGATTCAAGTGCCAGTAGTTCGaacaataacagtaataacaataataacaacagcAGTTTGAATAATCACAATTATAAGAGAAAACACACTGACGATGAATTTGCAATGACAAAACGTCGAATGAAAACGATCAACAATAACCACATTATAACCGAAAATGAATTCGATCACAGTTTCATGCAGAAGTATTGTTGTCCAGTTTGTAATCGCAACGATTTTTCAAGCATGATAACACTTGGATCACATATGGACCGAGAACACCCAGGAGTGCCAGCAAAATGTCGTCAATGCGAGACAATTTTTAAGACTTACAAGGCCTTGAACGCTCATAGATGCACGAACAAGGTCAACATAACTCAAGGGTTCAAAGACATTACATTCGTAGACTTCTCCAGCGAAAAATTTCCTCTTATCGCAAAATCATTGTGCGAACAGTCTATCAGGACCCCTATCACAAGCCAAAAGTTTGAATGCACCAAATGTTTTCGAGCTTTTCCATGTGCCAGTGCTGTAGATATCCATATGAAGGATTGCGGTGAAATCGCTCAAGATTTCTCAATACACAAACGACGTGCCACAAATGAAACTAGTTCCGATGAAGAAAATCGTCGAGACGAGTTTTTTGCTCATTTAGATTTACAAAATAAGTCAGCCATGAGTGTTGGTAGTAGCAATCTATCATCACCACATGCATCTGATAAATCAGAGAAACTTAGTTTCGataaaacaccaaaaggaATCAGTACCAGCAGCATTACAAATCACAACACTAACACAAACAGTAACTTCAGTACAAGCGACAGTATCGGTCACAATACAACTAATAGCCATCGAGAAGATTTGGCTGATATTCAGTCAATTTTAAATGTAGCCACATCttcaaacagttttttgcGAAATTTTGAGAAGTGTATCAATACACCAAGTAGTGATTATGGTGGTAAAGATGAAGAGGAAGCTCAGGATGCATTTACAGCTGAAtttagaaaaatgaaattacgtGGGGAATTCCCATGTAAACTATGCACAGCTGTATTTCCAAATCTACGCGCTCTCAAAGGTCACAATCGCATTCATTTGAGTGCAGCTGGAGCAGGTCCATACCGGTGCAACATGTGCCCATACACAATAAATGACAAGGCGGCTCTAATTCGTCACATGCGGACGCATAATGGAGATCGTCCATATGAATGTGCGGTTTGTAATTACGCATTTACAACAAAAGCAAATTGTGAACGCCACCTGCGAAATCGCCACTCAAAGACAACACGTGAAGATGTTAAACGTGCAATCATATATCATCCATCCGAGGATTCAAGCTGCGATGATCCACTGAAGAAGCTCCATCTGTTTTCATCACCCGAATTCGATCATGATGAAGATCATCCATTGCCAAAGGATCGGTCTTCAACTCCAGTATCTCATTTGAAAGAAATCTTACAATCTGATAAACCGCTTAAGATCCAAGTCAAAAGCTTGGAGAAGCTCATAGACAAAAATGCCACGTCGATGAGTGTCTTTGAAGATGAACCTGATAAGgaacatgaacatgaacatgaaaaGGAATCTCACACGGATGGTGGACGTCCAGTGGATTTGAGTATGGAAGTCTTGGATTTGAGTGTAAAAAACAAGTATCCATCTGAATCAGAGATGATCAAAGATGATGCTGACTTACAAAATGACCAAAAAGTCGATTTATCAGTTCTTgaaaaaaatcaacaaatccTTCTCGCTCAACAGCAATTTCTCAATGAAGCACTACCTAAAATTGATCCAGCTCATTACTTCCAGTTGTCTCAAATCTAcagaaatttagtttttccacCCTTCAATCCgtttttgttacaaaattcatttttgccAAATAATATTACTGATCTCAGTAAATTTTCATCGAACATGCTCATAAATCATTCCATATTTGGCCAAACTCCACCAAGCGATCGTCAATCACCAGCATTGAGTACAATTGGTTTGCCGAATGTAAATTCACCTCAATCTGGATCTATGCCACCGAACATGGCTGAGTCGCATGTCCAGAAACCCATGCAGCCAGCAACTCAACCACTTCAAAGAACCTCCCAATCTACAACAGCACAATCATCACAATTAAACATTCCGAATCATCCACTACATCCATCAGTTCAGAATCCTCAACCAACTCTCCTTGCGACATCTTCAAACTCTGGCCACGTCAAAATGGTAATTAAAAATGGTGTCCTTATGCCAAAGCAAAAGCAACGCCGCTATCGAACTGAACGTCCATTTGCATGCGAACACTGCTCGGCTCGTTTCACGCTCCGTTCGAATATGGAGCGACACATTAAGCAACAACATCCACAATATTGGGCACAACGACAACGGAGCGGGCATCATGTTATACGGCGTGGTAATGGATTGAGTGTTATGCCACAACAAATCAACACACCACCTAATCCAACATCATCCCCAGTAATTTCACAATCTGTTGGAGCAAATCCTTTAAACGCAATTTCTGATCAAGTCAAATATGCAATTTTAGCACAACAATTAAAGGCCAGAAAAGACACAGATATCCTTCAACAGGCACTCATCCAAagcaataacaataataccaACAAAAGTAATTCCTTATCAAGTATTACTAACAATGTAAATAATGAGAAAGTCAATGAACGCAGCTCAACTAGTCCGATTGTAAGCAGCAATACAAATAATCTTAGCGTAAGTCTGGAGGACGACGACCCAAAACTAGTGATAGACGAAGAAAATGATGAGGAACCAGACGATGAATACAAGGACAACCATGAATGTGAAGAACacgaagatgaagatgatgatatGGATCACACTCGACCAGAAGATTTGTCAAAATCTAACGAATCTACAGTGAATCCTACGAATTTAGCTGCCAAAAAAGTTGCAGAAACAATTCTAGAACAAGCTATGAAAGCCAGCAAGCCCACAGGCGTGAAGAACTTTAACCAAACGGTGCCATTGGAAAATCAGATGCAACAAAATGAAGCAAAGGATTTCGTTGCTGGACTCAAAATGGCGAACAACATGATAGCTACAGCTGAATCTGTTGGAAAATACCTAAAGGAAGTGGCAAGTTCATCTTTCAAAGACGAATCAACTGATTTGGTGCCTGTCTCAAAGTTAGTAGACAATGCAACAGCTCATACATTTAATAACTACTTTCCTCCCAGTGATATTGCAAATCAAACAGAACAAAGCGATGAAGAGGGACTAGTTGCATCTGGAAGTGCATCTGAAGGTAATCACTCAGGCACTGAAGAACCACAATCAAGTGGGTCTGGTGCGGagcaaaagaaaaaatcagCATACAGCTTAGCACCAAATCGTGTGTCATGTCCATATTGTCAACGAACATTTCCATGGTCAAGTTCGTTGCGTCGTCACATCCTAACACACACCGGTCAAAAGCCATTCAAATGTTCACATTGTCCATTGCTATTTACAACCAAAAGTAACTGCGATCGTCATTTGCTAAGAAAACATGGAAATGTTGAATCTGCTGTCTCACTTTACGTTCCAATTGAAGACATTCCAGATCCAGTTCCTACACCAAAGATAAAATCCGAAGAATTGGAACAATCAAAGCCAACCATTTCAACCAGTCTCAATTTGAATAttccaaatttaaaaaacgaaCCAATCATTCCAGCCTCAGATTTGCCATTTAAATGTCACCTTTGTGATAGTTCGTTCCCGGAAAGAATGCAGTGTTTGGAGCATATTAAAGTTCATCACACCCAGGAGTTTGCTCTTCTTCTGTCCAAGGGTGCCATTGATGCGGAAGCCGACTACAATCATATGCAACAAAACGATGAAGATGACCGTAACGATGGACGAGGGAAGTACCCAGACTACGCCAATCGCAAGGTAATATGTGCCTTTTGCGCCCGACGATTTTGGTCCACAGAAGATCTACGTCGCCACATGCGGACTCATTCTGGAGAACGACCATTTCAATGTGACATTTGCCTCAGGAAGTTCACACTTAAACACAGCATGTTACGACACATGAAGAAACACAGCGGAAATCCTcataataatcaatcaaattcaatcaatAGCGGATCAGATGCATCTGATGATGAACAACAAACATCTAGTTTGGCAAGGATGAGCAAACTCCAGGATATTCTCAGCAAAACCGAATCATGGCGCAACAGTCACTTCAGTGGCGaacataaagaaaatatttccttgcaATCATTACGAAAAACCGATCGCGAGGGAAATGATGAACCTAATTCCGATTTAATTGGTAACTTATTAGGTATAAGTGATCAAGGTATACTTAATAAACTCCTATCATCAGCTGATGAAGCAGCTAAATTTTTAGGAgttgagaaataa
Protein Sequence
MERRSSTTSESSVEPMDLGRTPNTTENTNEITTNSLLLQTTAATNSNDSQNYESDNEDDDMNLIKRENLRQNETKFSIVHQDELISSNTTSLRKKFRISTPNNRLTNNNNKDHHNNNRITTTTTATAASTTSTTDRTSNESGFVDSSSHNLNSSPESGATSEHDDVKYVCPICEVVSATPHEFTNHIRCHNYSPRDSENFTCRICSKVLSSASSLDRHVLVHTGERPFNCKYCHLTFTTNGNMHRHMRTHKQHQQYRNSSNTLSTNNGGSGNHISSDGGGGGNASSSSTGTGSAGGDGESYESDGCSTDSSASSSNNNSNNNNNNSSLNNHNYKRKHTDDEFAMTKRRMKTINNNHIITENEFDHSFMQKYCCPVCNRNDFSSMITLGSHMDREHPGVPAKCRQCETIFKTYKALNAHRCTNKVNITQGFKDITFVDFSSEKFPLIAKSLCEQSIRTPITSQKFECTKCFRAFPCASAVDIHMKDCGEIAQDFSIHKRRATNETSSDEENRRDEFFAHLDLQNKSAMSVGSSNLSSPHASDKSEKLSFDKTPKGISTSSITNHNTNTNSNFSTSDSIGHNTTNSHREDLADIQSILNVATSSNSFLRNFEKCINTPSSDYGGKDEEEAQDAFTAEFRKMKLRGEFPCKLCTAVFPNLRALKGHNRIHLSAAGAGPYRCNMCPYTINDKAALIRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHSKTTREDVKRAIIYHPSEDSSCDDPLKKLHLFSSPEFDHDEDHPLPKDRSSTPVSHLKEILQSDKPLKIQVKSLEKLIDKNATSMSVFEDEPDKEHEHEHEKESHTDGGRPVDLSMEVLDLSVKNKYPSESEMIKDDADLQNDQKVDLSVLEKNQQILLAQQQFLNEALPKIDPAHYFQLSQIYRNLVFPPFNPFLLQNSFLPNNITDLSKFSSNMLINHSIFGQTPPSDRQSPALSTIGLPNVNSPQSGSMPPNMAESHVQKPMQPATQPLQRTSQSTTAQSSQLNIPNHPLHPSVQNPQPTLLATSSNSGHVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHIKQQHPQYWAQRQRSGHHVIRRGNGLSVMPQQINTPPNPTSSPVISQSVGANPLNAISDQVKYAILAQQLKARKDTDILQQALIQSNNNNTNKSNSLSSITNNVNNEKVNERSSTSPIVSSNTNNLSVSLEDDDPKLVIDEENDEEPDDEYKDNHECEEHEDEDDDMDHTRPEDLSKSNESTVNPTNLAAKKVAETILEQAMKASKPTGVKNFNQTVPLENQMQQNEAKDFVAGLKMANNMIATAESVGKYLKEVASSSFKDESTDLVPVSKLVDNATAHTFNNYFPPSDIANQTEQSDEEGLVASGSASEGNHSGTEEPQSSGSGAEQKKKSAYSLAPNRVSCPYCQRTFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNVESAVSLYVPIEDIPDPVPTPKIKSEELEQSKPTISTSLNLNIPNLKNEPIIPASDLPFKCHLCDSSFPERMQCLEHIKVHHTQEFALLLSKGAIDAEADYNHMQQNDEDDRNDGRGKYPDYANRKVICAFCARRFWSTEDLRRHMRTHSGERPFQCDICLRKFTLKHSMLRHMKKHSGNPHNNQSNSINSGSDASDDEQQTSSLARMSKLQDILSKTESWRNSHFSGEHKENISLQSLRKTDREGNDEPNSDLIGNLLGISDQGILNKLLSSADEAAKFLGVEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-