Basic Information

Insect: Chrysops caecutiens
Gene Symbol: Kr-h1_1
Assembly: GCA_963971475.1
Location: OZ020569.1:44939710-44942105[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0035 0.85 11.6 2.7 1 23 133 155 133 155 0.99

2 8 1.1e-06 0.00027 22.6 0.6 1 23 193 215 193 215 0.99

3 8 1.5e-06 0.00038 22.1 2.5 1 23 221 243 221 243 0.98

4 8 2.9e-07 7.1e-05 24.4 2.8 1 23 249 271 249 271 0.99

5 8 1.2e-07 2.9e-05 25.6 1.7 1 23 277 299 277 299 0.98

6 8 8.9e-05 0.022 16.6 1.5 1 23 305 329 305 329 0.99

7 8 0.4 98 5.1 3.7 1 23 335 357 335 357 0.94

8 8 8.2e-07 0.0002 23.0 0.5 1 23 363 385 363 385 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0035	0.85	11.6	2.7	1	23	133	155	133	155	0.99
2	8	1.1e-06	0.00027	22.6	0.6	1	23	193	215	193	215	0.99
3	8	1.5e-06	0.00038	22.1	2.5	1	23	221	243	221	243	0.98
4	8	2.9e-07	7.1e-05	24.4	2.8	1	23	249	271	249	271	0.99
5	8	1.2e-07	2.9e-05	25.6	1.7	1	23	277	299	277	299	0.98
6	8	8.9e-05	0.022	16.6	1.5	1	23	305	329	305	329	0.99
7	8	0.4	98	5.1	3.7	1	23	335	357	335	357	0.94
8	8	8.2e-07	0.0002	23.0	0.5	1	23	363	385	363	385	0.98

Sequence Information

Coding Sequence: ATGGTTTATTATCCAGCACTTCCACTGATTGTTAaatcagaaattaaacaatCTCAACTATGTTCAACATTAAGCAATGTTGATGCACATCTTTATCCCAATGCAATTAATAttcaacagcagcaacaattactgcaacagcaacaacaacatcatcaGATATTAAGCAATACTTTGCCATCATCACCAACGCCTTCATCTTCATCACCGTCAAATCAATTGACTCAAACAATGTTaataacacaaaatcaaacatttccGAATAATATTAAGTTAGAGCATAATgatcatcatcaacaacagcaacagcaacagcatcagaatcatcatcaacatcaactaCAGCAATCCATACATATAGATCAGCCAATAAATAGTACTCATactaaattaacatttaaatgTGAACAATGCAATATGATATTCGGAAGTAAGAGTGCACATACAAGTCATATGAAATCTCATAGCAGTACTACAACCGCATCAATGCAAGACAATAATTATCAAAGCTCCTCTTCATCGATTTCACCAGTTATACCGACTAATGGTCAAGTACCAATTGGTGGATCCGATCCTTATCAATGCAATGTGTGCAAGAAAACCTTTGCTGTGCCTGCAAGACTGaTTCGACACTACCGTACCCATACCGGCGAAAGGCCTTTTGAATGTGAATTCTGTCACAAAATGTTTAGTGTTAAGGAAAATCTTCAAGTTCATCGCCGGATTCACACCAAAGAAAGACCGTATAAATGTGAAGTATGTGGTCGAGCCTTTGAGCACAGTGGAAAATTACATCGTCATATGAGAATCCACACTGGAGAAAGGCCACACAAATGCTCAGTGTGTAATAAAACCTTTATACAATCTGGCCAATTAGTTATACACATGCGAACTCATACTGGTGAGAAACCTTATAAGTGTCCTGTAGAAGGATGTGGAAAAGGTTTTACATGCTCAAAACAACTTAAAGTACACTCACGTACTCATACTGGAGAAAAACCATATCATTGCGATATATGCTTCAGAGATTTTGGATATAATCATGTACTGAAACTTCATCGTGTGCAGCATTACGGATCTAAATGTTACAAATGTACGATTTGTGATGAAACAtttaagagcaaaaaagaAATGGAAGCCCATATTAAAGGTCATGCTAATGAGATTcctgatgatgataatgataccGAGCAACAGGCTCAACCGCAAACACAATCACAACAACAACCGGAACAGGAACAAGAACAACAGCAGCCACAACAAACGCAATCGCAGCCCCCACGTGTTAAGAAAGGTAGTACAATTGCTATAAATACTCCAGCATTATCTCCAGTTGCTACTCTTCCATCGGTTGTTGCTCCACCAGTGACTACATCTCCTGGACAATCAGTAGCTATCAAAAAGGAAAAACCGATCTATAATTCCTATGAGCTGCTGCCTATTGCTGATGTGAGCAAGAGTCGAGACCCGATTGGTTTGTTCCCAGATACACCAATTGAATCAAGTTCCAGTTCAGAGCCGGATCCAAATACTGATAATTGTGAAGATGCCTTTTATTACAACATGTACAAGCGGTTTGACACTCAACCAGAGCAACAAATTGGAATCGATTATTCAATGAATCATAATCGAGCAACGATCAATCCAGCACTACTAGCAGCTGCATGTATAGCAAGTCGACGAAATAATAGCGAATCACCAAAACATAAAATGTCACCGCCACAATCATCGAATATCTCATCGCTTTCACCATTATCACCAATATCAACAAGTTTACATGTAACAACATCACCTTCTTCACCACAACCAATTGTTTCTATGGAAATTCcaatggaaatttcaaatgaaccAAATCCTAATGAAATGGTAGAAATAGATCTCAGTCAAAAACAATCAACTTTAAGAAATGAACCACAAAATACCTTCCCTTATGAACCATCACCGTTGACGGTGATGAGGCAACAAGGATATTTTGCACCTGCTCCAGTAGCTGAATACAGaCCATCACTAAAATCTGCTAACGACATTGTTCGTCAAGTAGAAGCCGCAATAGCTGGTGCTGAACCATTGTTAACACCACCAAGATCGTCTACAGAATCACCAGATCGTTCATCATCACCAGAAAGTGATTCAATGATGATGGCTGATCGTGACATGATGACACTTCCTCTacgtaaaagaaaattatatctTAAAGACAATCAATCGAATGATGTTTCACCAGTTATGCGTATGAGTTCAGTTATTCAATATGCTAGAGCATCGTAA
Protein Sequence: MVYYPALPLIVKSEIKQSQLCSTLSNVDAHLYPNAINIQQQQQLLQQQQQHHQILSNTLPSSPTPSSSSPSNQLTQTMLITQNQTFPNNIKLEHNDHHQQQQQQQHQNHHQHQLQQSIHIDQPINSTHTKLTFKCEQCNMIFGSKSAHTSHMKSHSSTTTASMQDNNYQSSSSSISPVIPTNGQVPIGGSDPYQCNVCKKTFAVPARLIRHYRTHTGERPFECEFCHKMFSVKENLQVHRRIHTKERPYKCEVCGRAFEHSGKLHRHMRIHTGERPHKCSVCNKTFIQSGQLVIHMRTHTGEKPYKCPVEGCGKGFTCSKQLKVHSRTHTGEKPYHCDICFRDFGYNHVLKLHRVQHYGSKCYKCTICDETFKSKKEMEAHIKGHANEIPDDDNDTEQQAQPQTQSQQQPEQEQEQQQPQQTQSQPPRVKKGSTIAINTPALSPVATLPSVVAPPVTTSPGQSVAIKKEKPIYNSYELLPIADVSKSRDPIGLFPDTPIESSSSSEPDPNTDNCEDAFYYNMYKRFDTQPEQQIGIDYSMNHNRATINPALLAAACIASRRNNSESPKHKMSPPQSSNISSLSPLSPISTSLHVTTSPSSPQPIVSMEIPMEISNEPNPNEMVEIDLSQKQSTLRNEPQNTFPYEPSPLTVMRQQGYFAPAPVAEYRPSLKSANDIVRQVEAAIAGAEPLLTPPRSSTESPDRSSSPESDSMMMADRDMMTLPLRKRKLYLKDNQSNDVSPVMRMSSVIQYARAS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -