Ccae018365.1
Basic Information
- Insect
- Chrysops caecutiens
- Gene Symbol
- -
- Assembly
- GCA_963971475.1
- Location
- OZ020568.1:12729392-12732924[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 8.4 2e+03 0.9 0.6 3 23 227 248 225 248 0.89 2 19 0.58 1.4e+02 4.6 2.4 2 20 291 309 290 311 0.92 3 19 0.079 19 7.3 4.1 2 23 322 343 321 343 0.91 4 19 0.0066 1.6 10.7 0.1 3 23 352 373 350 373 0.95 5 19 5.1e-05 0.012 17.3 0.6 3 23 381 401 379 401 0.94 6 19 0.033 8.1 8.5 0.8 1 23 407 430 407 430 0.90 7 19 5.7e-06 0.0014 20.3 3.2 1 23 436 458 436 458 0.98 8 19 1.5 3.6e+02 3.3 0.1 2 12 468 478 467 487 0.89 9 19 2.3e-05 0.0056 18.4 0.2 1 23 506 528 506 528 0.97 10 19 0.063 15 7.6 2.5 1 23 533 555 533 555 0.97 11 19 0.084 21 7.2 1.5 3 23 573 596 571 596 0.89 12 19 0.0076 1.9 10.5 2.1 3 23 605 626 603 626 0.95 13 19 0.15 36 6.4 1.2 1 23 631 654 631 654 0.94 14 19 7.6e-05 0.019 16.8 0.6 2 23 660 682 659 682 0.96 15 19 5.3e-05 0.013 17.3 1.1 1 23 685 708 685 708 0.98 16 19 0.22 55 5.9 3.7 1 23 714 737 714 737 0.94 17 19 0.00026 0.064 15.1 3.9 1 23 743 765 743 765 0.99 18 19 1.5e-06 0.00036 22.2 1.4 1 23 771 793 771 793 0.99 19 19 0.22 55 5.9 0.1 1 23 799 822 799 822 0.93
Sequence Information
- Coding Sequence
- ATGGTTCGAACACGGCGCAAAAAAGCACCAGTAAAATGCGTTATATGCTCAGAGGAATTGGAGGAACCATATCAACAAATATTTGATGAAACTGGAGAAGAACTGAGGCTGCAACAGCTCTTAGATGAATTTTATTCTATGAAAGTGAAAAAGGACAAAAATAGAACGCAGGCATTATGTGACCATTGCTTAAATGAGCTGATAGAAGCCTTCGACCTCAAACAAAAGCGATTACAGGAAAATAACGAAGATTTGGAAAATGTAGACATAAAACTGGAGATTACTGATAATGAGGATGCTCCGTCTAGTGGAGATGAATATGAAACTGAGATTTTAGACGAACAGTACGTGTCTGATAGGGAAAGCGATCAACATGttgaaataaaagaagaagcaGTAAGTGGTATAGTTcatgatgaaaatttatttgaaatgttcGCTGCAAGTCAACATGCAAAAGGGATAGACATTGGACAAAATGCAGACGATATGGTACCGAaggaagaaaatgaagaagatGGTTATATTACAAATGATGATCCGGATGATCCTCCAATGGAAGTTGAAGCTGCTGGTGTCGGGGAGGACGAAGAACCATATTACGTTGATTTAAAAGAGTATAAACGACTCGCTATTCGTAGTAAATTTGAAGATGTTGTCTTCCCTAAGTCGATAAACTGTAGGATTTGTGATACCGAACTACCTAGTCACGTTGCCGTATTGGATCACACAAAACATGAACACAGCATTAACGAAACTTCTTTTTCATGTGTCATAAGCGAAAAATGTGAGACTGAGTGTACCATGGAGGATCTCTCCtttcatttagttttcaaaCACTATGATCTAGAAGCTTTAACCGTATTCGTTCAATGCCCAGAATGTTTTGTTAGATTTAATAACTTTCTTCAATACAACAAGCATGCGTGCCATGTTGCTAAAAACGTTCCACGAGCTGCAACAAAATGTGAAACTTGTGGTAAAAACTTTAGATCAAATAAAAGGTATAGGTTCCATCAACAATTCCATCTGGAACGGTGTCGTCCTATGGCGTGTCTAATATGTGACGTTACATTCAATAACGAAGACACATTTTTTGAGCATGTCAAGTATGCCCATGAAAAAGAGTTGGATTTGATTTGCCTTGCtTGCGATAAAACATTTACTACCAAGAAAAATTTGCTTGATCATGAACAAACTCACAAAGTTGTGCGAAATTTCAAGTGTAAATCATGCCCTAAATCATATTTGGATAAACAAATGTTAAAGGATCATGAGATTGCTTACCACTCAAAAAGTAGTCCGTTTCAATGTTACATTTGTGGCAaatgtttaaacaaaaaatcactACTAAATAAGCACATAATGTCGCATGATGTACCTGAAGCAAGAGAAGTTTCAAGTTGCTCAGTTTGCGGAATGGTATTCCCAGACGACCAAGTTGGACAGAAACATATCGATAGTAAAAATCACGAAGAAGAGGCGGAAATTGAAAAGATAACCATTGATAAATCATTTGCATGTGAATATTGTGAACAAGCATATAGTAATGAAGATCAATTGCGTGCTCACCGTAGTACTCACAACAAAAAGGTGTTCTATTGTCATTTGTGTCCATTGGCTTATGACGAATACAAGAAGCTGAAAACTCATAAAGTAACACATTTTGGATATACGGATATAAAGAAAACGTTCCCCGTAATGAGGCACTATTTGTGTGATGTTGATAGTTGCAGCAATAGTTACATGCATTGGACCAGTTTAAAGTCTCATGTAAGGACTAAACATAATAAAACTAGTGAAATTATGAATTGCCATGAATGCTATGAGACCTTCGATAACGTGCATAATTATGAAGATCACGTTAATAAAGTTCACAAAAAAGGAATGCACATATGTCAATTTTGTGCGCaagtttttcattcaaaaatggCTTTAGCTGTTCACGTTGCTCGAAAACATAACACAGCACAAATTCAATGCGATGAATGTGAGAACACCTATTCAACTAATTATGATTTGAGAAGGCACAAACAATCAGCTcatcaaatattcaaatgtgaaacatgtaataaaattatgaaaaacagaaaaaatctAATAGTCCATCAAAGAATGGTACACGAAAAATTGAAGAGATATTATTGCCAATATTGTAATAAAGGTTATTTCAACAAATGTGATAGATTAGAGCACGAGTCAACAgtGCATGTAAAGATCAAGAGGTACAAATGTGAGCTTTGTTCGTATTCTTGCGTGTACAAACAGTCACTGAGTATACATATGCGAAAACATAGAAATGAAACTCCCTATAAGTGCACGCTTTGTCCAAAATCATTTCGCAGGGGTTATGCGTTGACTTTGCACTTACGGCGACATAACGATATAAGAGACTATGTTTGTCAATATTGTAATGCAGCTTATCCAATTCAGGGAATTTTAAACTCTCACATTAAAGCTAAACATCCTAACGGAATTAATACTAAAACTCGTGCAAGAAGAACAATTGCAATTTCATCTGCTCGGCGTAAACAATCTACTGTTCAGCGTACAACTACATTTGTAGACGACGATGATGGCTTAGACGAAGGAGCCGCCCCCGAAGAGTCCCTTGAAGAGCACCAACCTGAAAATCACGATGATCAAGTAATGGTTGCAAACTTCGAAATTGATCATGAAAATCCAGATGATCCAGGTGAAGAACAAGAACAAAGAATCTACATTATATCAGATGCTGAATCTTCTGTAATATTGcaacaaaacgaaaacgaTCATGACTACATTGTGCGAACGTGGATGCCATCATAA
- Protein Sequence
- MVRTRRKKAPVKCVICSEELEEPYQQIFDETGEELRLQQLLDEFYSMKVKKDKNRTQALCDHCLNELIEAFDLKQKRLQENNEDLENVDIKLEITDNEDAPSSGDEYETEILDEQYVSDRESDQHVEIKEEAVSGIVHDENLFEMFAASQHAKGIDIGQNADDMVPKEENEEDGYITNDDPDDPPMEVEAAGVGEDEEPYYVDLKEYKRLAIRSKFEDVVFPKSINCRICDTELPSHVAVLDHTKHEHSINETSFSCVISEKCETECTMEDLSFHLVFKHYDLEALTVFVQCPECFVRFNNFLQYNKHACHVAKNVPRAATKCETCGKNFRSNKRYRFHQQFHLERCRPMACLICDVTFNNEDTFFEHVKYAHEKELDLICLACDKTFTTKKNLLDHEQTHKVVRNFKCKSCPKSYLDKQMLKDHEIAYHSKSSPFQCYICGKCLNKKSLLNKHIMSHDVPEAREVSSCSVCGMVFPDDQVGQKHIDSKNHEEEAEIEKITIDKSFACEYCEQAYSNEDQLRAHRSTHNKKVFYCHLCPLAYDEYKKLKTHKVTHFGYTDIKKTFPVMRHYLCDVDSCSNSYMHWTSLKSHVRTKHNKTSEIMNCHECYETFDNVHNYEDHVNKVHKKGMHICQFCAQVFHSKMALAVHVARKHNTAQIQCDECENTYSTNYDLRRHKQSAHQIFKCETCNKIMKNRKNLIVHQRMVHEKLKRYYCQYCNKGYFNKCDRLEHESTVHVKIKRYKCELCSYSCVYKQSLSIHMRKHRNETPYKCTLCPKSFRRGYALTLHLRRHNDIRDYVCQYCNAAYPIQGILNSHIKAKHPNGINTKTRARRTIAISSARRKQSTVQRTTTFVDDDDGLDEGAAPEESLEEHQPENHDDQVMVANFEIDHENPDDPGEEQEQRIYIISDAESSVILQQNENDHDYIVRTWMPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -