Ccae038573.1
Basic Information
- Insect
- Chrysops caecutiens
- Gene Symbol
- -
- Assembly
- GCA_963971475.1
- Location
- OZ020569.1:50301375-50304529[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.062 15 7.6 0.2 3 23 15 36 13 36 0.90 2 15 0.00038 0.093 14.6 1.5 1 23 39 62 39 62 0.95 3 15 0.1 25 6.9 0.0 3 20 72 89 70 91 0.92 4 15 6.8e-05 0.017 16.9 1.8 1 23 99 121 99 121 0.98 5 15 0.00019 0.046 15.6 1.8 1 23 127 149 127 149 0.99 6 15 0.00011 0.028 16.2 0.6 1 23 155 177 155 177 0.95 7 15 0.034 8.2 8.5 1.2 1 23 489 512 489 512 0.93 8 15 0.22 53 5.9 0.3 2 23 534 555 533 555 0.88 9 15 3.1 7.5e+02 2.3 2.0 1 19 563 581 563 582 0.92 10 15 4.8e-06 0.0012 20.5 0.8 3 23 592 613 590 613 0.96 11 15 0.0035 0.86 11.5 0.1 2 21 629 648 628 649 0.93 12 15 7.7e-06 0.0019 19.9 2.4 1 23 657 679 657 679 0.98 13 15 1.3e-06 0.00031 22.4 2.3 1 23 685 707 685 707 0.99 14 15 1.8e-05 0.0044 18.8 0.2 1 23 713 735 713 735 0.97 15 15 0.017 4.2 9.4 3.6 1 23 741 763 741 763 0.98
Sequence Information
- Coding Sequence
- ATGGCAAGACAAAGAGCACGTGCATTAAGGGAATCATTAGCTTGCCGCTATTGTCCTAGCGTATTTTCAACCAAGAATGAGCAAATTCAACACACGGAGGAAATACACAAGGTATTCAAATGCCAACTTTGCAAGCGGGTGTTTGATACTCGAGAAAAGTATTCAAATCATATACAAGATGAACATAACGGAAAAGATCGTGAATATATGGCCTGTGAAAGATGTGGACAACAATTTCGATTGGTCaatcagttgaaaattcatgTAGAATCAAAATGCGGGACagagaaaatgttttcttgCGATGAATGCGGGCTTAAATACATGACTAAGAGTACATTGAATACGCACAAAATGAAACATAAAGGCCACTTGTCTTATGAGTGCTCATTTTGTGAGAAGCGTTTTTTAAACAAAGGACAGTTGACTGTTCATAAGAGGATGCATACAGGCGAGAAACCCTATAAGTGTGACCAATGCCCTAAAATGTTTGCATATCGGGAAAGTCTGGTAACTCATTCATCATTGCATACTGGAGTTAAACCTTTCATGTGTGAATGCTGTCGTCAAACGTTCTCATGCATaggtaattttcaaaaacatcgAAGGAGTAGACCAAATACTTGCGGATTGCCTGAATATGATAGAAGCATAAAAGTAGCACCACGACCGAGCATAAAAAATCCCGGTTCTCTGACAATGCAGAAGAGAACCACAGTTACACCTCGAAAAGTGCTTAAGGAAGAGGATAAGAAAGTTAGAATGAAGAACAAGTTGCAGGATTTTGCTGATATTTGTGTACTAACTGCAAGTGGCGCAAAGATCAGCGCTATCCCCGACGATGATTCTAGTTATATGTTTGTCAACGAAATGGAAAACGAAAGCCAAGAGGAGAACACTGTTGAATTTATTGCTTATAAAGGATCAGATTGTGAAGAAGAACTAGatAACAGCGAATTAATCGAAGTGATTGAAATGTCTGAAAATGTGGAAGATGATGAAAACACTAATTTAAGCCACAGTACAGGAAATGAATTGGTTTACGAGGTCGATTATACTAATGATTGCAATAATGACAACGAGACAAAAGACAGTCCTGTTTATTTAATGCTTCCTGAAAGTGAAGtagaaaatcaagaaactgtgTATTCATATGATCAAAATTGTGAAACATCTACAGAATCCACATCGATTGAGTTCATTCCAAATACGGAAGATGACGATGATCAATGCACTTACAGGCTAATTGAGAAATTGGACGAAGAAAAATCCACAAGAGACATTGAGATTGACACAAACGAGAAATCTACCGGATCACATGAATTGGAAGTTTTGCAAAGTGAACTCTCCATGGAATCTgtgaaagaagaaattttagACGAGAATATGTATGAGGTTGAAGTTCTTGAAACTGAATCTCAGAGTTTGGAAGACCTCCAAAATGTAACTCATTCGAAAGGTAGTCATGCTTGCCCGTTCTGCCCTAAAGTATACCAACTACGAATATCATTTATTAAACATTTGTTCAAAGATCATAGAAAAGGCTATGAAGAAGTATATAAAGTCTTGCCAAAAACACTAGAAAACAATTCAGCTTTGACTTGTAAGTACTGCGATAAACTTTATCTAAGTCAAACTGCCTTGGATAAGCATGAAGCTGGTCATGGTACTGCAGGGAAACTGTTACATAAATGTTTCTGCTGTGATGAGTTTTTCACAACTCTAGCGGAAGTAGCAAAACATGCTTGGGTAAAACATCCGGAAAAagtaatttgtaaaatttgcgAAAGGAAATTTTCGGATCCAGATAGTCTAACTAGTCATCATCGTTCTGCCCATAAGCCGAACAAGGAAAAAACCAAATCAACAAAAGCAATACAATCAGTTTGTGCCAGGTGTGGTGAAATGTTTTCTTCTAAAATGTCTCTGTTAGACCATGAGCGATCACTTTGTGGATCTTCTCCGCAGTACAAATGTGATGATTGTGGTAAATCTTATCACAGTTCAGGTTCATTGAGAACACATAAAAGTATTCATACGGGGGAACTACCGTTTAAGTGTTCTTACTGCGAAAAAGCGTTTCGGACCCGTGGCCAAGTAAAAGTCCATCAACGAAAACACAGTGGAGAGAAGCCATATCAGTGCGATATGTGTCCAAAAGCCTTTGCTTATAGAGAAAATCTCCTGATACACTTTTCAATTCACACTGGAATGCAGAGATTTCAATGCAATAATTGTAGcgcaaaattttcttgtataacAAACTTGCAATCACATAGaagaattcataaaagtaCATGTGGAGCAAAACCGAGCGTGACTAAGCCAGTGGGTAAAATGTTAGGTGTCGTTCATGGATCAGTTTATGTTGGAGATAAGTCTAATGTacaaggaacaaaaaatgaataa
- Protein Sequence
- MARQRARALRESLACRYCPSVFSTKNEQIQHTEEIHKVFKCQLCKRVFDTREKYSNHIQDEHNGKDREYMACERCGQQFRLVNQLKIHVESKCGTEKMFSCDECGLKYMTKSTLNTHKMKHKGHLSYECSFCEKRFLNKGQLTVHKRMHTGEKPYKCDQCPKMFAYRESLVTHSSLHTGVKPFMCECCRQTFSCIGNFQKHRRSRPNTCGLPEYDRSIKVAPRPSIKNPGSLTMQKRTTVTPRKVLKEEDKKVRMKNKLQDFADICVLTASGAKISAIPDDDSSYMFVNEMENESQEENTVEFIAYKGSDCEEELDNSELIEVIEMSENVEDDENTNLSHSTGNELVYEVDYTNDCNNDNETKDSPVYLMLPESEVENQETVYSYDQNCETSTESTSIEFIPNTEDDDDQCTYRLIEKLDEEKSTRDIEIDTNEKSTGSHELEVLQSELSMESVKEEILDENMYEVEVLETESQSLEDLQNVTHSKGSHACPFCPKVYQLRISFIKHLFKDHRKGYEEVYKVLPKTLENNSALTCKYCDKLYLSQTALDKHEAGHGTAGKLLHKCFCCDEFFTTLAEVAKHAWVKHPEKVICKICERKFSDPDSLTSHHRSAHKPNKEKTKSTKAIQSVCARCGEMFSSKMSLLDHERSLCGSSPQYKCDDCGKSYHSSGSLRTHKSIHTGELPFKCSYCEKAFRTRGQVKVHQRKHSGEKPYQCDMCPKAFAYRENLLIHFSIHTGMQRFQCNNCSAKFSCITNLQSHRRIHKSTCGAKPSVTKPVGKMLGVVHGSVYVGDKSNVQGTKNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -