Ccae031947.1
Basic Information
- Insect
- Chrysops caecutiens
- Gene Symbol
- -
- Assembly
- GCA_963971475.1
- Location
- OZ020569.1:6638425-6647613[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0014 0.33 12.8 1.2 2 22 57 77 56 77 0.94 2 19 1 2.5e+02 3.8 4.1 1 22 88 109 88 109 0.95 3 19 5.4 1.3e+03 1.5 0.1 7 23 243 260 237 260 0.87 4 19 0.00032 0.078 14.8 0.5 1 21 278 298 278 299 0.96 5 19 0.00037 0.09 14.6 0.1 1 21 320 340 320 341 0.95 6 19 0.00026 0.063 15.1 0.5 2 23 353 374 352 374 0.96 7 19 0.0013 0.31 12.9 1.6 2 23 381 403 380 403 0.95 8 19 0.0028 0.69 11.8 5.6 2 23 1007 1029 1006 1029 0.96 9 19 0.0044 1.1 11.2 0.9 2 23 1081 1103 1080 1103 0.94 10 19 0.12 28 6.8 6.8 1 23 1148 1170 1148 1171 0.95 11 19 0.00017 0.042 15.7 1.5 1 23 1226 1248 1226 1249 0.95 12 19 0.14 35 6.5 2.5 2 23 1270 1292 1269 1292 0.92 13 19 0.0017 0.42 12.5 0.1 1 23 1479 1502 1479 1502 0.94 14 19 1.6e-05 0.0038 18.9 1.3 2 23 1725 1746 1724 1746 0.96 15 19 0.0029 0.71 11.8 1.7 2 23 1752 1774 1751 1774 0.92 16 19 2.4e-05 0.0059 18.3 1.6 1 23 1819 1841 1819 1841 0.98 17 19 0.002 0.5 12.3 0.1 2 23 1848 1870 1847 1870 0.89 18 19 0.00058 0.14 14.0 1.5 2 23 1890 1911 1889 1911 0.98 19 19 0.00038 0.094 14.6 0.1 2 23 1918 1940 1917 1940 0.96
Sequence Information
- Coding Sequence
- ATGTCTGCCGATGCAGAAAAGGATGATGTAGGTGATAAAGCCGATTCTGAGTTTGGTGCAGACGATGCatcaaatgaaacaaaagaTAATAATACAGGGAGTGATGATAGTACAAAAGAAGAAACAGATGGAGATTCTTTGTTAACAAaagataaatatataattttgaaatgtgaaaaatgtttaaaagtgTTTGGGACAAGGCATTCACTCGTGCGTCATTTGAAACGGTCAAGTATTTGTGGTACTAATCCTGAAAAGCACCGTTGTGGTACATGTTGTAGAGTGTATGCGACACGAAATGGCTTACATCGGCATCAACGTTCAAGCTTGGAGTGTAGGAAAGCCGGTGATATATCCGATGATCATAACACATCCACTGAAGACAAATCGATTGTGTCGACTGTTCTTTCGCCTAACAGCAAATCTGTTAAAGAAATTAGTGAACCATCCACTCCATTATCATCTATAGCATCTGGTAATCTTAGTATGTCAAATGCACCGAGCGCATCGAGCTCACCTAGAGAATCGATTGCATCCAGCCCATCAAGTAAACCAACTACACCTAGTAAATCTGACACATCCAACGACCTCAGTCTACGGGGTAAATCAATGACTCCGAAAAAATCCCCCACAGATGATGTGCCATCTACACCATAtaaagaaacaattttcaatttgccttgtaaaatgaaaaatgatgaaTCTTTCAGTTGTGAAAAGGCTAATGAAACTTACGTATCAAAAGAGGCGCTAGAAAAACATAAGCAATACTCCCATTCCGATGTAGACAGAAAGTCCAATAAGCTTGAAAGTAGGAAAAGTGAACAATTCACTTGTGATAAATGTGGTAAATTGTATACTTCGAAAAATGGATTAAAGGAACATATAAAGAATTCTCCAGAGTGCCATTTAGAATCTCCAAATAAACCGGGTAGCTCTAAAACGGAAAGACGGTTTAAATGCGAAAAATGTGGTAAAGTTTTCATGGCACGTGGGGATTTAATGGAACATTTAAAATCCTCAACAACATGTAGTGGAGATAGCGAAGGAACTCCTTGTAAATATTGTGGAAAGCCttatatcaaaattaattcattaagACGTCATGAACGCAAtcataaagaaaataatagtTTGCAATGTCCATTTTGCACAAAGTGTTTTTCAACAGAAACTGGCATCAAATCACATATAGAAAAAATTCATGATAAGAAAGCTGATGAATTTATTCACTTACCTGAAAAGCGAAAAAGTACATCACAAAACAACAGTAGCCGTAGTAAAACAAAGTCTGCCGTTGTAGCTAAAAAGGATGATACACCTCCTGTAGTAAATTCTAAAACGCAAAGTGCAATTAATTTAACTGGGGTTAAAAGTGATGTTGTTCATGTTCTTCCTGGGAAAATATCTCACCAAACAAACCTTCAAAAAGTAGATCATATATCTGACCAAAGCAATATTAATCCTTATGCAAATACTTTTAAGACAAATGTCTACAATCCTGACAATCATATAAATTATCCGAACATTCATCAACAAGTTTGTTCTCCTCAAGCTGGCTCTTATAAAGTAGAACAACTACCtcatgaattaaatttcaatcatAATTACGACAGTAAGCCTAATCATATTATAGATCCGtcttattcaaatattcacCACCTCAAACCAAATCAGTATCATGATTACAGAAATGTAAATCCTTCATTACAAAACTTTAAAGATGGTACTAATCTTAGTGATAATATACCTGGAACATCTCATCAAACGATGAATACAAATCTAGTTAATACTAAAGAAATTGATGATATAATTGATCATGTTCTTGCCAGCCAACTCAATAACCCTCAGCAAATGAGCACTCCTAAACCTGAATATATGTCCAACCAAGGGAACATTCATGTATACATGAACACTAATCCAACAAATATGTACAGCCATACTAGCCCACCTTTTCATTCGAATTCTCATGATCGAACTTGTACTCCCGAATCTAGTACTTATAAGAAAGAGCATATACCAAATCAAGTGAACTATAATCAATTTCTTAATTCATCTGAATTTACATCAAATGAAAATCCTCCGATGACAAGACTTGATTTCTCTAGCGAACGGCTAAGTCTTAATCCTCATAGTTCAAATCAATACAGAAGCCCACAAATGAATACAACATCAACCACCCCTATTCCTAGTCATAATTATATAAGTGAATCGATTAATATAACACAGCAAGATAATTATCCAGGAGGTGATATTCCTATTAGTGAACAACCTAATGCACCCGTAAATTTTAATAGTGAAATTTCTAATACTAACATTGGAGCTCCTGGTAATACATATTTTAGAGATCATTTAAACCCATTTCTTACTAACTATAAACAAGATGGCATATCTGGCGATACACAAACAGCCAGTATGTCACAAAATTTCACGCATACaaatattaatgaaaaggATTCAACTCATGCCAGCACTAGTTCTTCGACGTCATATCAAGATGCCTACAGTCCATACCATGCATCTTGTTCAAATTCAGCAGACAAAACGCAAATAGCCAACTTAACGTGTGAAGAGCCCATGTTAACTGATCTAGACTATAGgCCCGACACAGAAGAACAGGCAACAGAGAAATCTTTCACCGTGCTAACTCCTGCCCGTCTAAGTACAAATCATTCACAACCcagtaaattttttccaaacgAATATTATAACCCAAATGAGGGGGGACACTCACAAGGATCAATGAATTCTAGTCTAACAGGAATACCATATACTGACAGTGTGGATGGTCCCAGTCACATGTATCATAACGATTACCTGAATCGCGTGCATCAATATCCATATCGGAAAAATTACGATTCTGTACAAGATAACCCGATGAATCAAAACTTTACACCACGTAATGATATACCAATACCACCTTTGTCTCACAATAATAGCGAGAGAGATGATGGAACACAAAATGTTTCAACATTTCGCGATCGCATTAACTACAATCCAGAATCCAAACTCATAAAATGTATGTTTTGTAGCAAGAGTTTTTGCACAAAATCCGGCCTCAGATATCACACAAAAAAGTACCACCCAGATAAATTACACACTATTTCAAGCATTCCACAGATGGCTACGCAATATCCAGGTCATATTCAAGTAAGCACCAATCAAAATGTCGGATCTGCTATAAATGAAACTACAAGCAAAGGATGTGAGATAAACATAAAAGCAAAGGGGCCTTTGCAATGTTTGTCCTGTGATAAAACCTTTTTCACCAAGCCAGGGCTAAAGGAACACACAGAAAAATCTCACAATAATGGAGAATGTAGCCAGGGACAACAGCCAAACACCAATTTAAATCAACACCCTGAACAAACAAGTAATGAAGAAGCCAAAAATGAAAGTGCTGAAATAAAACTAAGTATAATAGATGAAACAACATTTTTTCACTGCATGTTTTGtgaaaaacgtttttcttcGAAAAATGGTATAAGgTGGCATACTAAAAAGCATCATAGTCTTGAAGATTTTCAAAAGACAAATATTCTTTTGGGAAAGTTGAGAATAGCCGCTTCTCGAACTGAAACATCTAACGTAGATTTGAACAGATTAACTAACGTACAACCTTCTATTAAGCTTGTAAAAAACAGTTCAGGAAATATGCAAGAAATCAAAAGTTTTGAATGCTTAATGTGTGATAAATCTTTTACGGCTAAAAATGGTCTCAAAAATCATGTGATTAGACATCATGGTGAGAAACCATTTATACGGAAAAAACCTGTTCACTTGGATAAAGGACATGATTGGATAAAATGCACAATCTGTGAGAAACGTTTTCTAACAAACTCTGATTTAAAGTGTCACTTGGATAAGGATCATGACTCTCCAAAGGCTGGCGTGTCGACTAATTTGTCGCCAAATGGTTTTGTAGAGCATACTGTGGATGACGATACAAGTGCGGAACACAAGTTCGAAAATCaagaatttctttttgaatcTTCATCTGACCAGAAAACTGAAGATGTCAAatTTAGTGGCCTAAATTTGAATGAATCTGTTTTCAATAAACTAGAAAGCAGTGAGGAATATACAATCAAACGTGAAATCTTGTCAACGATTCAGGATAAAAAGGTGGACACAAAAGCAAATGATCATGACGCAAAACAAAAGCCAGAAAGCACAGAACTTCATAAGACTGACTTTAATTTTCTAGATTTTGCAGACATTCGAAACCTAACAGTTCcaactaataatttaaattcagGTTCAAGttcTGAAGCTGCACAAAATGATTCTATACTTTTGTTTGATAACATAATTCAAACTACAGACATTGCGCTTTTATACACTTGCGAAATTtgtaaaatgcaaatttgtcAATGCGTTCAAAGGGATGAATTTTCTGATAATATAAGCGCTCAAATTGATAATGCATATTTCAAGTGTAAACTTTGTCCTGCAGTTTTTTCCGGCAGTATTGATCTCTTAAGACACACAATTCTCGATCATaaAAAACTGGAACCACCAGCTAATGAAAACATAAACGAGGAAATTAATATGCAAGGGGATGAATTTAATAACACTGGATTCgatattgataatcaaaaCTATTCTCaggaaaacaatttaagcGTAATAGAAATAGATACACTAAAGGAAATAGAAACAGAAACACTAAAGGAAATAGATACAGAAACACTAAAGGAAATAGAATCAGATATActaaatttcaattctttaATCGCCGAAGGTAATGATTCCACTACGAATTCTGTACACTGCATGAATGAGGCAAATGAAAACAAGagTAACTCACAAAAGTTAGAAGAGCTAAAACCAGAAGACCAAAAAAGTAATGAAAATGACACAAACCATCGTGATGAAACAGTTTTATCAAATCCACCCATTGGAACCACTGAAACCGAACTTACAGTCTCCAATACAACCGTCACATGGAATGAGGATAATCAAAATAACATATCAAATGAAGTCGTTACGGACTCAggcgaaaataaaaatacgaCGTTGGGAGAAAGTCAACAACCCACAACATCCTCCAAAGAAGAGAATGGAATCCTTCCAAGAAATGAATGCCAAACCAGTATCATCAAAACGGATGTGTGTTCGGAATTACCTGACGAAAAAGTACGCTTCGCAACTAAAATGATGAAGTCTTCGTGCAAAATTTGCAATCGTACTTTTGACACGAAGAAAGCGTTGAAACTGCATATGATGGAACATGTAGAAGCACCTTCTGTTTGTTCAGACTGTGGTAGACTATTCCCTACACACCGATCGTTAATGAGACACAAAATACAGAAACATAGAGAGTCTTTTGATAAAGAACAACTGGCATTAAGAAAAGCACGATCGAGATCTTTCAGTCAGCCCAAAAGAACTGTCAGCATAAAAGAAGTAtcagaaaaacgaaaatacaaTAGAACAATTCAAAGTGAATATACTTGTAAtatttgtaatgaaaaattcgTTATGAAGAAATATCTACGGGTTCATATGCAACAGCATTTAAAAGATGGTCCAATGACTTGCCCGATTTGCAATCGAGTTTTTGGAACACGCCTTTCACTTATAAAGCATAATATCCAAATTCACAAaaaaaggaataaactTAGAAGAAATGCAGCCCAAAATAATCGATTGCGTTCAAAGACTTGCGATATTTGTCAAGAAGAGTTCGAACATTGGCAGGAAATGCGAATTCACAGACGAACACATGATAGTAAAGGGCCagtaaaatgtgaaatttgtgATACTGTTCTGGCTGCAAAAAGTTCCTTAAAACGTCATATGGACAAAGTTCACAATACTGTGGTACCAGAACGATCTGGAGGTTCAGGTACTACTTCCAAAAGAAAAGTGCCTCTTGTGAGAATCCTCGAGAAAAAAGACTACATATCTCCGCATGTCTGGGCTAAAGATTCAAAGAAAGGTCACGTTTTCGATGACTTCGACCATCTAAGtagaaaagaaatttcataCTTGGAGCACAGAGTCGACGATAAGAAAATGATGGAAAAAGTGGGATTACGTGAATTTTTCTTAGATCGGTTAAAAACGGAAAGCGATGCTAATAATGCGAGCAAACAGAATAGTGAAGAGTCAGTtgacaaaaaacaaaaggacAATACAATGGAGACCAATGATCAAGAGAATGTTGAACCAGAACTTTTTGTAGGCCATATTaaacttaagaaaaatttcgaaaaaatgttagTAACAAAATTTGGTAAATGTCTTCAAATCGATTTGCCTGAATCTCCTGAGAACGAATTTTACATCCCGTTCGATTATGAAGACGACATAGCTctggaattttttatttcagatGAAAAACTCTTGAATAACTTAAATTctattgtaattaaattatttgacaAAAGCACATTGGATTCTTTTGGATGGCCTGAAACATCAGCAGAGAAGGTATACAaacaattaattcaattattgaaATCTTCCCTTAACTCTCGTGTATCGTTTTAG
- Protein Sequence
- MSADAEKDDVGDKADSEFGADDASNETKDNNTGSDDSTKEETDGDSLLTKDKYIILKCEKCLKVFGTRHSLVRHLKRSSICGTNPEKHRCGTCCRVYATRNGLHRHQRSSLECRKAGDISDDHNTSTEDKSIVSTVLSPNSKSVKEISEPSTPLSSIASGNLSMSNAPSASSSPRESIASSPSSKPTTPSKSDTSNDLSLRGKSMTPKKSPTDDVPSTPYKETIFNLPCKMKNDESFSCEKANETYVSKEALEKHKQYSHSDVDRKSNKLESRKSEQFTCDKCGKLYTSKNGLKEHIKNSPECHLESPNKPGSSKTERRFKCEKCGKVFMARGDLMEHLKSSTTCSGDSEGTPCKYCGKPYIKINSLRRHERNHKENNSLQCPFCTKCFSTETGIKSHIEKIHDKKADEFIHLPEKRKSTSQNNSSRSKTKSAVVAKKDDTPPVVNSKTQSAINLTGVKSDVVHVLPGKISHQTNLQKVDHISDQSNINPYANTFKTNVYNPDNHINYPNIHQQVCSPQAGSYKVEQLPHELNFNHNYDSKPNHIIDPSYSNIHHLKPNQYHDYRNVNPSLQNFKDGTNLSDNIPGTSHQTMNTNLVNTKEIDDIIDHVLASQLNNPQQMSTPKPEYMSNQGNIHVYMNTNPTNMYSHTSPPFHSNSHDRTCTPESSTYKKEHIPNQVNYNQFLNSSEFTSNENPPMTRLDFSSERLSLNPHSSNQYRSPQMNTTSTTPIPSHNYISESINITQQDNYPGGDIPISEQPNAPVNFNSEISNTNIGAPGNTYFRDHLNPFLTNYKQDGISGDTQTASMSQNFTHTNINEKDSTHASTSSSTSYQDAYSPYHASCSNSADKTQIANLTCEEPMLTDLDYRPDTEEQATEKSFTVLTPARLSTNHSQPSKFFPNEYYNPNEGGHSQGSMNSSLTGIPYTDSVDGPSHMYHNDYLNRVHQYPYRKNYDSVQDNPMNQNFTPRNDIPIPPLSHNNSERDDGTQNVSTFRDRINYNPESKLIKCMFCSKSFCTKSGLRYHTKKYHPDKLHTISSIPQMATQYPGHIQVSTNQNVGSAINETTSKGCEINIKAKGPLQCLSCDKTFFTKPGLKEHTEKSHNNGECSQGQQPNTNLNQHPEQTSNEEAKNESAEIKLSIIDETTFFHCMFCEKRFSSKNGIRWHTKKHHSLEDFQKTNILLGKLRIAASRTETSNVDLNRLTNVQPSIKLVKNSSGNMQEIKSFECLMCDKSFTAKNGLKNHVIRHHGEKPFIRKKPVHLDKGHDWIKCTICEKRFLTNSDLKCHLDKDHDSPKAGVSTNLSPNGFVEHTVDDDTSAEHKFENQEFLFESSSDQKTEDVKFSGLNLNESVFNKLESSEEYTIKREILSTIQDKKVDTKANDHDAKQKPESTELHKTDFNFLDFADIRNLTVPTNNLNSGSSSEAAQNDSILLFDNIIQTTDIALLYTCEICKMQICQCVQRDEFSDNISAQIDNAYFKCKLCPAVFSGSIDLLRHTILDHKKLEPPANENINEEINMQGDEFNNTGFDIDNQNYSQENNLSVIEIDTLKEIETETLKEIDTETLKEIESDILNFNSLIAEGNDSTTNSVHCMNEANENKSNSQKLEELKPEDQKSNENDTNHRDETVLSNPPIGTTETELTVSNTTVTWNEDNQNNISNEVVTDSGENKNTTLGESQQPTTSSKEENGILPRNECQTSIIKTDVCSELPDEKVRFATKMMKSSCKICNRTFDTKKALKLHMMEHVEAPSVCSDCGRLFPTHRSLMRHKIQKHRESFDKEQLALRKARSRSFSQPKRTVSIKEVSEKRKYNRTIQSEYTCNICNEKFVMKKYLRVHMQQHLKDGPMTCPICNRVFGTRLSLIKHNIQIHKKRNKLRRNAAQNNRLRSKTCDICQEEFEHWQEMRIHRRTHDSKGPVKCEICDTVLAAKSSLKRHMDKVHNTVVPERSGGSGTTSKRKVPLVRILEKKDYISPHVWAKDSKKGHVFDDFDHLSRKEISYLEHRVDDKKMMEKVGLREFFLDRLKTESDANNASKQNSEESVDKKQKDNTMETNDQENVEPELFVGHIKLKKNFEKMLVTKFGKCLQIDLPESPENEFYIPFDYEDDIALEFFISDEKLLNNLNSIVIKLFDKSTLDSFGWPETSAEKVYKQLIQLLKSSLNSRVSF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -