Basic Information

Insect: Chrysops caecutiens
Gene Symbol: -
Assembly: GCA_963971475.1
Location: OZ020567.1:30717669-30721296[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0013 0.32 12.9 1.0 1 23 255 278 255 278 0.95

2 14 0.028 7 8.7 3.2 1 23 317 339 317 339 0.99

3 14 3.7e-08 9e-06 27.2 2.8 1 23 356 378 356 378 0.99

4 14 5.2e-06 0.0013 20.5 0.7 1 23 384 406 384 406 0.97

5 14 0.00058 0.14 14.0 1.5 1 23 412 434 412 434 0.98

6 14 0.00012 0.03 16.1 4.0 1 23 440 462 440 462 0.98

7 14 2.3 5.6e+02 2.7 3.7 3 23 476 497 468 497 0.90

8 14 0.011 2.8 10.0 1.4 2 23 512 534 511 534 0.94

9 14 0.0014 0.35 12.8 0.7 5 23 544 562 543 563 0.94

10 14 1.6e-05 0.0038 18.9 1.8 2 23 569 590 568 590 0.97

11 14 5.5e-07 0.00013 23.5 1.3 1 23 596 618 596 618 0.97

12 14 2.3e-06 0.00057 21.5 3.9 1 23 624 646 624 646 0.99

13 14 2.6e-06 0.00065 21.4 1.3 1 23 652 675 652 675 0.98

14 14 9.2 2.3e+03 0.8 0.1 2 19 677 694 677 695 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0013	0.32	12.9	1.0	1	23	255	278	255	278	0.95
2	14	0.028	7	8.7	3.2	1	23	317	339	317	339	0.99
3	14	3.7e-08	9e-06	27.2	2.8	1	23	356	378	356	378	0.99
4	14	5.2e-06	0.0013	20.5	0.7	1	23	384	406	384	406	0.97
5	14	0.00058	0.14	14.0	1.5	1	23	412	434	412	434	0.98
6	14	0.00012	0.03	16.1	4.0	1	23	440	462	440	462	0.98
7	14	2.3	5.6e+02	2.7	3.7	3	23	476	497	468	497	0.90
8	14	0.011	2.8	10.0	1.4	2	23	512	534	511	534	0.94
9	14	0.0014	0.35	12.8	0.7	5	23	544	562	543	563	0.94
10	14	1.6e-05	0.0038	18.9	1.8	2	23	569	590	568	590	0.97
11	14	5.5e-07	0.00013	23.5	1.3	1	23	596	618	596	618	0.97
12	14	2.3e-06	0.00057	21.5	3.9	1	23	624	646	624	646	0.99
13	14	2.6e-06	0.00065	21.4	1.3	1	23	652	675	652	675	0.98
14	14	9.2	2.3e+03	0.8	0.1	2	19	677	694	677	695	0.88

Sequence Information

Coding Sequence: ATGGCATTAGCACGAAGCCAAATGGAAAAATACtttattgaaaatgatataaataCCATGTGTCGTTTATGCGGAGTCCCATCAAACGATGAATTAGTtgaaattttcggaaaaaattGTATAGAGGATCTTGGCGTTAAAATCAGTAAATACTTACCGGTTGAGATATGTGAGGATGATGTTTTACCAACACAAGTGTGTTCATCTTGTGCAAATAACGTCTTGAACTGGGATTTACTCTATAATCGATGTTTGAATGCAGACAAGGACTTTAAAATCCTTCTATCAGAAGAAAAGCTCATAGAAGAAACGGTTCCCGAAGGACTGATTGACTCCAAAAAGATTGAAACGAAATTGTTTGAAGAAAGTGATCACAGTAGAGTACAATTGAAATCTGAAGCTTCACAATGGTCATTAACAGATAAAGACTCTAGTAACGACTTAGATAATGGTACCGAAGAAACGCTTCACTCAATAAAGTATGAATACGATAGCGAAATTGAAGATTATGAGCTGGAAGGAAATCTTACCACGgACAGTGAGTCGacaaaagaagaaacaaataatGACCATGCAAAGCCGGCAAACGTGCAGAAAAGGAGGTGGAATactagaaaaatgaaattgacgAAGTCAGATtcgaatgaaatggaaaatttgtcAGATGATAAAGACAAATTCTACTTGTCAACAGGAAAACAGACAGATGTTATAACAAAACGAAATTCTGCAAGACGAGCGTTTTGTGTAAGAAATGGAGTTTACATTTGTCCAGATTGTGATAAGAATTTCATGGAAGTAACACAGTTTTGTCAACATTTGTTAAATGTACATAATGAAAAGGGTTCATGGCTGGCctcaatttcaaaaactcaaaCTCCAAGTAGAATGAATAAGGATACAGAGCAATTAGAAAAAgctaaaatttatattgacggaaaattatgttttaagtGTAACGAATGTAAGCACATAGCTCGAAAAACATCACTTTGGCTTAATCATTACAGAACACATACTGGAGAAAAACCGCATATTCAGTCGGTTCATATGCTGGTTAAAAATTATACTTGCCATATATGTGACACAAAATTTGTTAGCTCATCAAACTTAAAAGAACATATGAATACCCATACCGACAACAGGCCTTTTATTTGTGATGCTTGTGGGAAAGGTTTCCGTCAAAAATCGTCATTATTTCTTCACAAAAGGATCCATCAATCAACGTGTAAATATTACTGTCCAATTTGCAAAAAAGGATTTCATCAAAGAATACCAATGACCACACATTTGCTAACACACACTGGTGAAAGACCATATGCATGTGATGAGTGTGATAAAACATTCAGGACCAAACGTGAATGCTTAAATCACCAGAAAACACATTCAGAGGAAAGACCATTTCAATGTACAGCCTacaatttttgtaatttgtgtTGTGCAAGTTTTaatactgaacaaaatttagatAAACACAAATCAGTACAACATCAGAACGAGCTGGAACATTACGATGCAACAGAGAAAATCGTTCAGTGTAAAAATTGCGAACAATCTTTCAAttcaaaacttaaattatATGAACATTTTCTGAAAGAACACGAGgaaagaaacaaaacttttatctGTGAATGTGGTAGACCTTTCGAAACTGAATCGATGTTAAAAATGCATGAAAGAATTCACCATAATAAAGGTACCTTAAAATGTGATATTTGTGATAAGGAATTCAGTAGATACAAAAGTTTTCGTGAGCATACTAATTCACATTCAAATTATCGACCTTTCGCTTGTAACTTGTGCGATAAATCTTTTAAATACAGCAGTAACTTGGCCCAACATAAAAATATGCACAAAGGTATAAAACGTTATAAATGCACAGAATGTGATCGTTGCTTCTCTCGTTCAACCACCTTAGataatcatttaaaaattcacagaaatgaaaaaaattatgtttgtgAACATTGTTTTGTAGCTTTCATACAATTGAGTTCGCTTCGCAAGCACATCAGAACAATGCATCGTAAGTGTGAAAGATGTGGAAATATAGTAGGAGATAAAAAGGAATATCTTGTTCACAAATGGAAATATTGTGCAAAACTTCAGGTATCACAAAATTCTAACCAAGAATCATGTTTTGCTGAACCAGAGTATCAAGCTAGCAATAAATTGGATCAGTAA
Protein Sequence: MALARSQMEKYFIENDINTMCRLCGVPSNDELVEIFGKNCIEDLGVKISKYLPVEICEDDVLPTQVCSSCANNVLNWDLLYNRCLNADKDFKILLSEEKLIEETVPEGLIDSKKIETKLFEESDHSRVQLKSEASQWSLTDKDSSNDLDNGTEETLHSIKYEYDSEIEDYELEGNLTTDSESTKEETNNDHAKPANVQKRRWNTRKMKLTKSDSNEMENLSDDKDKFYLSTGKQTDVITKRNSARRAFCVRNGVYICPDCDKNFMEVTQFCQHLLNVHNEKGSWLASISKTQTPSRMNKDTEQLEKAKIYIDGKLCFKCNECKHIARKTSLWLNHYRTHTGEKPHIQSVHMLVKNYTCHICDTKFVSSSNLKEHMNTHTDNRPFICDACGKGFRQKSSLFLHKRIHQSTCKYYCPICKKGFHQRIPMTTHLLTHTGERPYACDECDKTFRTKRECLNHQKTHSEERPFQCTAYNFCNLCCASFNTEQNLDKHKSVQHQNELEHYDATEKIVQCKNCEQSFNSKLKLYEHFLKEHEERNKTFICECGRPFETESMLKMHERIHHNKGTLKCDICDKEFSRYKSFREHTNSHSNYRPFACNLCDKSFKYSSNLAQHKNMHKGIKRYKCTECDRCFSRSTTLDNHLKIHRNEKNYVCEHCFVAFIQLSSLRKHIRTMHRKCERCGNIVGDKKEYLVHKWKYCAKLQVSQNSNQESCFAEPEYQASNKLDQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -