Basic Information

Insect: Chrysops caecutiens
Gene Symbol: su(Hw)
Assembly: GCA_963971475.1
Location: OZ020569.1:6635329-6637783[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 6.3e-05 0.016 17.0 1.6 1 21 68 88 68 89 0.94

2 12 1.3e-05 0.0031 19.2 0.4 2 23 147 169 146 169 0.92

3 12 0.045 11 8.1 1.1 1 23 175 197 175 197 0.96

4 12 4.2e-06 0.001 20.7 1.5 1 20 203 222 203 224 0.93

5 12 1.3e-06 0.00031 22.4 0.1 2 23 237 258 236 258 0.96

6 12 9.9e-06 0.0024 19.6 0.3 1 23 268 290 268 290 0.99

7 12 3.9e-07 9.4e-05 24.0 0.4 1 23 296 318 296 318 0.97

8 12 7.5e-05 0.018 16.8 0.2 1 23 324 346 324 346 0.99

9 12 3.8e-06 0.00094 20.9 1.6 1 23 352 374 352 374 0.95

10 12 2.7e-05 0.0065 18.2 0.6 1 23 380 403 380 403 0.92

11 12 0.36 88 5.2 6.0 2 23 412 433 411 433 0.96

12 12 0.024 5.8 8.9 0.4 2 23 463 485 462 485 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	6.3e-05	0.016	17.0	1.6	1	21	68	88	68	89	0.94
2	12	1.3e-05	0.0031	19.2	0.4	2	23	147	169	146	169	0.92
3	12	0.045	11	8.1	1.1	1	23	175	197	175	197	0.96
4	12	4.2e-06	0.001	20.7	1.5	1	20	203	222	203	224	0.93
5	12	1.3e-06	0.00031	22.4	0.1	2	23	237	258	236	258	0.96
6	12	9.9e-06	0.0024	19.6	0.3	1	23	268	290	268	290	0.99
7	12	3.9e-07	9.4e-05	24.0	0.4	1	23	296	318	296	318	0.97
8	12	7.5e-05	0.018	16.8	0.2	1	23	324	346	324	346	0.99
9	12	3.8e-06	0.00094	20.9	1.6	1	23	352	374	352	374	0.95
10	12	2.7e-05	0.0065	18.2	0.6	1	23	380	403	380	403	0.92
11	12	0.36	88	5.2	6.0	2	23	412	433	411	433	0.96
12	12	0.024	5.8	8.9	0.4	2	23	463	485	462	485	0.95

Sequence Information

Coding Sequence: ATGTCAACAAACGTGAAACCGTCTATAATGAACGTTAAAATAAATATGGAAAATGATGAAATTGAAGTATTGGATGAGGTACCAGCAACCACTGTAGAACAAGAAGAATATGTTGTTGAAGAAGTCGATGAGATGGAAGCTATAGAACTTGTTCCGAGCGGAGAAGACTCCATGGCAATATTGGTGAAGGAGCTGGTGGAACATGTTTGCGGGAAATGTAATAAGACTTACAAGAGTTTCAATACACTTAAAAGGCACATGTTGGTTTGTCGTATAAAACCGAAATTTCATAAGGACGTGTCCATGGAAGAATCCGAACTTGCTCGGAAACTATTTAGTAACGTTGAAGAACTTGAGAGATTGGCACAAGAAATGGAAGATCAAgagatttgtttttgttgtgaagaaaattttagtaCGGCTCATACTGGACATATCCGATGCCCAAATTGTCCAAAAGCTTTCAAGAATTCGCAGAGTTTCGAGAGGCACTTGATATTTATTCACGCATCAAACGATGATTTTCCATGTGATGTATGCAATGCAAAATGTCCTTCGAAATTCTTCCTTGAATTACATAAGAATGCTCATAAGCGTGGAAAACCATTCGCTTGCCAAAAGTGTGGGAAGGAATTTACTCGGAGATACCATTTGATAAGGCATGAACAATATACCAGTTGTGATGTTACAAAACGAAAAGAGGAGCTTCCGTGTGAAGTATGTGGCAAAGTGTTCTTTAGACTCGATAATTTACGTTTGCATTTGAGAGGTCATATGGGTGAAAGTCAAAAACGCAGAGACTATCAATGCCTGTATTGTGATATGGCGTTCTATGGCTCTGCAACACTCAaCATCCATTTGCGGACCCACACTGGAGAGAAGCCTTTCGCTTGTGATTTATGCGACAAATCATTTCCTTCAAATCCTGCCCTTAGAAAACATCGACGAACGCACACTGGCGAGAAGCCCTACAAGTGCGCAACGTGTTCAAGAGCGTTTGCAGCCAAAGAAGTACTTAATCGtcacatgaaaattcataCAGGAGAGCGTCCACATGCTTGTAACGTGTGCGGAAAGAGATTCATCCAAGCAACTCAGCTCAAATCTCATATGTTCAATCATACTGGTGAAAATGGTTTCAAATGTGAGACTTGCGGGGCGAACTTCAACAGGAAAAGCAGGCTTACCAAACATTTGGTTGAGGCTCATACCTCACCCAAGAAAACTAAATGGACATGTGTAATCTGTTGCCAAACattcaaaacacaaaagaatCTAGAATGCCACCAAAAATCCCATGAAAATAATTTGCTTAACAATGTGAAAGGTGATTTTCAAACTATGGAGATCAAATCTATTTCTCGTCCTGCAAAACAGAGACGATTAAAGTGCCCCGCTTGTATTGAAACTTTTGTACACTTAGCAACACTCACGCAACATCTGGAAACTAAACATAAGTTGGACCGCTCCATTGCTTTGGAAGAACCAACAAATGCTAACAACTCTGTGTCACCTAAAAAGGAAAAGACTGTATCATACAAAATCCAAACCATCAAAGATGAAACTGATAGTGGAACAATCATATTCTCTGAAGAAATATCTCTTTCACCAGCAAGGGATGTAACGAGTGATAAACCAAATATTGGCGATGTTATATATCTCCCAACGAAAACGCcgaatgataaaataaatcaaataattaaagatgaaataattaataatagtgGTGACGAAGATGATGAAGACAACCCACCATTATTTATGGACGATAATTCCCTCAATGAAAGCGTTTCAAAACTCTTACACGTCCTATTAGATGAAGCTATGTTGAAGTCGTTAGGTTGGCCTAATGCTCCTATTGATTATgTACTCAAAGAAATCATCAAACAATGCGGACATGTTCCAAATAATTTCGATGATTGTTCAGACTACACTACACAAATGAGGGATAATGTTAAACTCCTATTCAATTTGGTTATAGacaataatacaattaagGCTCTTTTGAACAATAACACAATTGATGAAGTCATACATCACGTTTTAAAAATGGCTAATGTAAAGTAA
Protein Sequence: MSTNVKPSIMNVKINMENDEIEVLDEVPATTVEQEEYVVEEVDEMEAIELVPSGEDSMAILVKELVEHVCGKCNKTYKSFNTLKRHMLVCRIKPKFHKDVSMEESELARKLFSNVEELERLAQEMEDQEICFCCEENFSTAHTGHIRCPNCPKAFKNSQSFERHLIFIHASNDDFPCDVCNAKCPSKFFLELHKNAHKRGKPFACQKCGKEFTRRYHLIRHEQYTSCDVTKRKEELPCEVCGKVFFRLDNLRLHLRGHMGESQKRRDYQCLYCDMAFYGSATLNIHLRTHTGEKPFACDLCDKSFPSNPALRKHRRTHTGEKPYKCATCSRAFAAKEVLNRHMKIHTGERPHACNVCGKRFIQATQLKSHMFNHTGENGFKCETCGANFNRKSRLTKHLVEAHTSPKKTKWTCVICCQTFKTQKNLECHQKSHENNLLNNVKGDFQTMEIKSISRPAKQRRLKCPACIETFVHLATLTQHLETKHKLDRSIALEEPTNANNSVSPKKEKTVSYKIQTIKDETDSGTIIFSEEISLSPARDVTSDKPNIGDVIYLPTKTPNDKINQIIKDEIINNSGDEDDEDNPPLFMDDNSLNESVSKLLHVLLDEAMLKSLGWPNAPIDYVLKEIIKQCGHVPNNFDDCSDYTTQMRDNVKLLFNLVIDNNTIKALLNNNTIDEVIHHVLKMANVK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -