Ccae003404.1
Basic Information
- Insect
- Chrysops caecutiens
- Gene Symbol
- hang
- Assembly
- GCA_963971475.1
- Location
- OZ020567.1:13421191-13429575[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0077 1.9 10.5 2.0 3 23 242 263 241 263 0.95 2 23 0.25 62 5.7 2.4 2 22 325 345 324 345 0.93 3 23 1.3 3.3e+02 3.4 0.6 3 21 355 373 354 374 0.94 4 23 0.0008 0.2 13.6 1.5 1 23 414 437 414 437 0.94 5 23 8.5 2.1e+03 0.9 0.0 3 20 451 468 450 469 0.92 6 23 1.7 4.1e+02 3.1 3.4 2 23 478 500 477 500 0.90 7 23 0.00056 0.14 14.1 0.5 2 23 539 561 538 561 0.93 8 23 1.4e-05 0.0035 19.1 0.4 1 23 569 592 569 592 0.92 9 23 6.6 1.6e+03 1.2 0.9 1 23 605 628 605 628 0.91 10 23 0.099 24 7.0 2.1 1 23 631 653 631 653 0.97 11 23 0.00053 0.13 14.1 4.2 2 23 703 724 702 724 0.97 12 23 1.2e-05 0.0028 19.4 2.6 2 23 775 797 774 797 0.96 13 23 0.0012 0.3 13.0 0.6 2 23 806 828 805 828 0.95 14 23 1.4e-05 0.0035 19.1 0.1 1 23 841 864 841 864 0.97 15 23 0.00018 0.043 15.6 0.5 1 23 892 914 892 914 0.98 16 23 0.0011 0.27 13.1 0.9 1 23 922 945 922 945 0.96 17 23 0.0072 1.8 10.6 1.4 2 23 953 974 953 974 0.97 18 23 0.0016 0.4 12.6 0.4 3 23 1033 1053 1032 1053 0.98 19 23 1.9e-05 0.0046 18.7 0.3 3 23 1087 1107 1085 1107 0.97 20 23 6.8e-05 0.017 16.9 2.9 2 23 1136 1158 1135 1158 0.96 21 23 0.17 42 6.2 0.1 2 20 1175 1193 1175 1195 0.93 22 23 0.0016 0.38 12.6 0.3 2 20 1209 1227 1208 1230 0.92 23 23 0.00074 0.18 13.7 1.0 1 23 1397 1419 1397 1419 0.97
Sequence Information
- Coding Sequence
- atgaCAGAAGAATTAGTTATTCGTGCTAGACAAAATTGTTGTCGGCTATGCCTAGCCCCGGACAGTGAATGTGTTCCTATTTTCACAACTTCAGCTGCTGATAAGGAGCCactttttacaaaaattattgctTGTATTGGCATCAAGGTTAGTCGATCTGATCGCCTATCATGCAGAATATGCCACGCTTGCATAAGTTATTTGAACTCATGGCAGAGTTTCAAAAATCGTTGCGTAGCTGCACAAGTGAAACAACAGAATTGGCTAGAAATGGTCAAGAATCCAGCAGGACATCACAACGTAAGACATGAATTTGGTCCTGGCTTTAACTCCATAAATGGATctggaaaatgtcaaaaatcaaattatcaaAGGCACCTACCTTTTATGATTAAACAGGAGCCTATTGATGAtatgaaatttgtaaaaaccGAAGCAACAGAAAATGTAAAACTTGAACTGGATCCAAGACATCTCTTACCAAGAGATTGTGAAATAACAATTGAACAGTCTGAAGGCACACCATCCACACCTTCATCGTCCGCAAACGCACCAAATATTTTAGCATCATTGGGACTAACCAGTGTACATAGTGGGATTAATCCATATTCGTTCTTGAGCACCGAGCTCAATGACAGTCCCTATGGTCTTGATTTCAAAAGTAAAATGTCATCaataaattcagaaaattacGAGACGTCCACAAGTTGTACTCCACCATCTTGCCGTATCtgcaaaatgcaattttccaCACGTGCGAATGCTCGCCGTCATGAACGAAATAAACATGGAAGACTATCAATAACATCCACATCACAAATTGTCAACAAATCACAACCAGTTCAAATGACTCCTGAAATGATGGGTATATTCGATTATACAAACCCAACAAAGTATCGGCATTTGCTAACAGATCAAAAGATATTATTCCTTAGACGTAATGAGGAATTCATGAAACAGTATCAGGACATGACTTGTAAATGTTGTAGTAAAGAGTATCcttcatataaaaattttatggtaCACATGCGAAAGAAGTACCCTAGTTTGGCAAGAAACTTATGCTTTAAGTGTCTCAGACAATTCCAATCAAAGGCAATGTTTGTTGCTCATCTGAAAAAGAAGAATTGTATTAATTTGTACAAAGTGTTCATGAGTGATGAGAGTATTCCTAAGAATGGTCCGCTGTTTTCATCACCCGACAAAATGGGAACAAAGGAATTGCtggcaaacaaaatatatgagTGCAAACTTTGTAATAAAACTTTCCGATTAAAATTGGATTTCCGTACTCATGTTAACGATGAACATAACGAGgaaatacaaaagaaggaacaTTCTCCTGGTATTTGCGTGTTTTGTGGTATTGAAGTAACAGATCCGGTAACGAGAAAACGACATTATGGCAACAATGAGTGTATTGTAATTCTACATTGTGGTACATGCAAGGAAACATTTGAAAgtcatcaaaaatttatagatcATGTGTACAATACTCACTTGCCTACATCAAACAATGATGCTTCACAGTCAGAGAACACAACAAGTCAGAATAATGGTGTCTTGCCTTCAAATTTAGAAGATTCAAGTTTGAGTTCATTAGGATATCCACAAAGCTGTACAATTTGTGGTCAAAAGTATAACAACTATTATAATGTTCTACGACATATGGAGGCCAAACACCCCGATCAACTCCCGAAAACTTATAATTGTGAGAAATGTGATACAGGATTTGCCAGACAATCATCATTGCGTGAACATATGTACGATGTACATGGTACAACTTTGCCAAGAACTCCAAAACGGGACGTATATTCCTGCCGCTTGTGTTCTGATACATTTGATCATCCTTTAAAATGGGTTGCTCATCAATCTGACAAGCACCAAAAGTACGTCTGCTGCCATTGTCCCTATCAAACAGAAAGTATGGATGACTTCAAAGCACATCTCGAAGAACATCCACTAATGGCTAGTAGACTTGGGCTAAATGTTCCTACGGAATATGACACTGGCATGAATGGTGAAATcaacattaaaattgaaagttcaAGTGATTTTGGTCCCACTGCCAAGAAAGCCAAAATTGAGGAAGATAATGTAAAGAAAGAATGTCAAACCTGCCACGAAGTTTTTGATAATTCTATAACATTGTCTCATCATATGAAAACACATTTTAACGTTCCTCATCCGAAACAAATGTTAGCAAACGAAAGACTTGTCAACGTTAGACCTTTGaatatcaaagataaaatattgACTGGCACAGGAGCTACCAACGTAGCTACTTCAGCTACATTTGGGGATCCACGATTTCGTCGAATGCGCTGCAGGATATGTCAAAAACGATTCTCAACAAAGAAAAGTTACCGAAGGCACATGTTAGTCGATCATCAAATTCGTAACGTCCAGTTCATAAAATGTGGTGTTTGTAATGCTGAATTTACACATGAGAAAGGACTTAAAGTTCATATGTTTAAAATACATCAAACGATTTTAACCAACGACAGTATGGAAGTTCAGTTTGAATGTGAAGTATGTGGAACGGTTTACAGAAATGAGGATCAATTAAATGCTCATAAGAGTACTGTTCATGGAATTCAATCAATTGAAGATGTGCCCATGCAAGTTTCTGAGTCTCCACTTCCACCTGCGACAAATGATTCAACGTTATGGTTCCAATGTCGTTATTGTCCTGCTAACTTCGATACAAATAAGAAATTAGCCATACATATCAACTCTCACGAAGAATTCGATTCCAAAGACTACTCATGTAAAGATTGTGGAAATGTTTATAGTGGTAGAAAAAGTCTCTGGGTTCACAGGTATAAAAAGCATCCAATGGTACCAGATCCAGCAGAAtgtaaaatatgtataaaaatgttttttgacaaaaatatGCTTTTTATGCACCTGAAAACCCATTCAGCTACGGATGTTTACGAGCAATtacaaaaattgcaaaaaaacataaaaaaagaGAATACGACGGAAAGTAAAGCCAATCAAAAGCTTGAAAATCCTGTTGGAGTTGGAGTTGGTGATGAAAATGGTAATGAAGAACTAGAAGACGACGATGAAATGGTTGGACATGTCGCTTGCTCGATGTGTGGTGACAAATTTAATGATCAGGATTTATTCGATAAACATATGCAAATGCATGAAATGGAActttacagtgacaatccaCTTGCGTCTATGTTCGACACAGGTCCAGACGATTCTAGACCATCATTAGACGATGAGTGTGATGAACACGGATGTGATTTATGTGATAAAGCGTTTGCAACACCATCTGCGCTTAAAGCGCATCGAAACTGGCATTTCAGATCGGACGCAAAACAgACACCATCTGAACCACTGGAATTACGTACAGCTAATAGAAAAAAATGTGACCTTTCATCAATCAGATGTCATTTTTGTAATGCTACATTTACCAAACGCAACAACTTACGAAGGCACATAGTGACACTACATAaggataaattaaataaacaggACAATGAAGAACATGAGAACAGTCGTGAGTGCCAAACATGTACCATCACTTTTCCATCATTGACCGAATTTATAGCACATAAAATCAATGATTTGAAAACAGTTGCGATTGCAGAGGACACTAATTGGACCTGTGAAATTTGTAGTAATAGTTTTTCAAGTAGAGATAAACTTGTACAGCATATGCCTTCTCATTTGAAAAAAGATAGAAACAATGTGATTGCTGTAAATGCTGAACAAATAGCAAGTGAAATAGGATCAGAGAACAATTCGCGAGATTCTGCATCTTTGTCAGGCCTTTCTAATAAAGATCCTAGTCCGGatcaaattttcatcaaaagttCAAATGGAGGTGGGATTAGTAATGTAAAAGCCGAGTGTACTCCTGAAACAAATTTTGCCGCAAAGGACGAAAACGTTCAAGATGTTATAACTATTGGAGACGAAAGTAACGTTGaagatgaaattgaaaacgaaCTTGAAACGGATGAAGACTTAGATGCTGATATAGAGACAAGTGGTGAACTCTCAGAAGAAGATGAGTCAAATGAGGAATTTAGTGAAAATGAAAGTGTAGAATCAAATCTAGACGATGATAGTCCTGATACGAGcaatcagaaaattttaaaaacaaatgtaGCACACGTAGTTGGTGATTCAATTCAGAAAGCCGAACCAAAAAGTTCTGGTTCATACTCATGTGATTTATGTCAAGTTTATTTTGATACATCAAAAGAGTTACGACGTCATGTGACTAGTCATTTCTTAAATGGACCTGGATCGGTTACATTAACTGAAATACCCAAAGATAAATCAAATATGTAA
- Protein Sequence
- MTEELVIRARQNCCRLCLAPDSECVPIFTTSAADKEPLFTKIIACIGIKVSRSDRLSCRICHACISYLNSWQSFKNRCVAAQVKQQNWLEMVKNPAGHHNVRHEFGPGFNSINGSGKCQKSNYQRHLPFMIKQEPIDDMKFVKTEATENVKLELDPRHLLPRDCEITIEQSEGTPSTPSSSANAPNILASLGLTSVHSGINPYSFLSTELNDSPYGLDFKSKMSSINSENYETSTSCTPPSCRICKMQFSTRANARRHERNKHGRLSITSTSQIVNKSQPVQMTPEMMGIFDYTNPTKYRHLLTDQKILFLRRNEEFMKQYQDMTCKCCSKEYPSYKNFMVHMRKKYPSLARNLCFKCLRQFQSKAMFVAHLKKKNCINLYKVFMSDESIPKNGPLFSSPDKMGTKELLANKIYECKLCNKTFRLKLDFRTHVNDEHNEEIQKKEHSPGICVFCGIEVTDPVTRKRHYGNNECIVILHCGTCKETFESHQKFIDHVYNTHLPTSNNDASQSENTTSQNNGVLPSNLEDSSLSSLGYPQSCTICGQKYNNYYNVLRHMEAKHPDQLPKTYNCEKCDTGFARQSSLREHMYDVHGTTLPRTPKRDVYSCRLCSDTFDHPLKWVAHQSDKHQKYVCCHCPYQTESMDDFKAHLEEHPLMASRLGLNVPTEYDTGMNGEINIKIESSSDFGPTAKKAKIEEDNVKKECQTCHEVFDNSITLSHHMKTHFNVPHPKQMLANERLVNVRPLNIKDKILTGTGATNVATSATFGDPRFRRMRCRICQKRFSTKKSYRRHMLVDHQIRNVQFIKCGVCNAEFTHEKGLKVHMFKIHQTILTNDSMEVQFECEVCGTVYRNEDQLNAHKSTVHGIQSIEDVPMQVSESPLPPATNDSTLWFQCRYCPANFDTNKKLAIHINSHEEFDSKDYSCKDCGNVYSGRKSLWVHRYKKHPMVPDPAECKICIKMFFDKNMLFMHLKTHSATDVYEQLQKLQKNIKKENTTESKANQKLENPVGVGVGDENGNEELEDDDEMVGHVACSMCGDKFNDQDLFDKHMQMHEMELYSDNPLASMFDTGPDDSRPSLDDECDEHGCDLCDKAFATPSALKAHRNWHFRSDAKQTPSEPLELRTANRKKCDLSSIRCHFCNATFTKRNNLRRHIVTLHKDKLNKQDNEEHENSRECQTCTITFPSLTEFIAHKINDLKTVAIAEDTNWTCEICSNSFSSRDKLVQHMPSHLKKDRNNVIAVNAEQIASEIGSENNSRDSASLSGLSNKDPSPDQIFIKSSNGGGISNVKAECTPETNFAAKDENVQDVITIGDESNVEDEIENELETDEDLDADIETSGELSEEDESNEEFSENESVESNLDDDSPDTSNQKILKTNVAHVVGDSIQKAEPKSSGSYSCDLCQVYFDTSKELRRHVTSHFLNGPGSVTLTEIPKDKSNM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -