Ccae016524.1
Basic Information
- Insect
- Chrysops caecutiens
- Gene Symbol
- -
- Assembly
- GCA_963971475.1
- Location
- OZ020567.1:79216196-79218641[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.5 6.1e+02 2.6 0.1 6 21 84 99 83 100 0.92 2 13 0.0067 1.7 10.7 0.1 1 23 168 191 168 191 0.93 3 13 0.72 1.8e+02 4.3 1.9 1 20 214 233 214 235 0.91 4 13 5e-07 0.00012 23.6 3.5 1 23 329 351 329 351 0.98 5 13 7e-06 0.0017 20.0 3.2 1 23 357 379 357 379 0.96 6 13 0.00021 0.052 15.4 2.8 1 23 385 408 385 408 0.97 7 13 9.8e-08 2.4e-05 25.9 0.5 3 23 420 440 419 440 0.98 8 13 1.5e-05 0.0037 19.0 1.8 2 23 446 467 445 467 0.96 9 13 1.3e-06 0.00032 22.3 0.3 1 23 473 495 473 495 0.96 10 13 1.2e-06 0.00029 22.5 0.7 1 23 501 523 501 523 0.98 11 13 4.1e-06 0.001 20.8 0.8 3 23 531 551 529 551 0.96 12 13 2.9e-06 0.00071 21.3 3.3 1 23 557 579 557 579 0.99 13 13 0.00028 0.069 15.0 0.6 1 23 584 607 584 607 0.98
Sequence Information
- Coding Sequence
- atggaTAATGATACAATAAAACTAGaggaaatgaatgaaattgataaattatGTAGAACGTGTTTATGCTATGATACGAATTTGAAATCATTGTTTAATGAATGCGACTCGGATAATAATGGAATATCATATGCGAAAATGTTAGCTGCATGCAGTAAATATCCAGTTGAAGAGAATGATGATTTTCCAAATAATATATGTAATAAATGTTTGAAGGATATCAAATTCACGtatgatttcaaattgagttgTGAGAAGTCTTATGAAACATTGAAATCAATGATATGGCATAGAAGCACAGAAACTGGATTTGAATCATTGAGAAATCGTCAGAAACCCGAAGCACGAGACGATCCAGATCCAGATCCAGATGTGGCTGTTGTTTACTTAGATGGTAACTTGACTGTATTAAGTGCTAGAAGGTCTTCTGAGCGAGATACCGAAGCTAATGATATGCATATTAAAGATGATGTTATATACATAGAGaATGTTCGAGATGCTTTTACCTGTGACATTTGTATGAAAGTCTACGAAGATGAggaacaattcaaaatgcatATTATCGATGGTCATATAAACGGTGATAGCTTGAATTCAGAATGTGAAATTATCACACCAGACGAACCGACAGTTGTTGCATATTCCTGTGAACGATGTAAAACGCATTTTGACAATGATGCGGATATAGAAAATCATACATGCAACGAAATTGGTGATTCcatATTTCTAACTGTCGATGTATTGAAACAAAGTGCAAGACAATCAAAAAGGAATGATGATAGCTATGATCATGATCAGAACGATTCGGATTATATGGATGTAATACGTTTGAGTGATCAGAGTAATGAGGAGAGTGAAGATGATGACAAATCTGtatcacaaaataataatactaaaacagACAAAATCACTAATggtaataagaaaacaaataaaaatcaaaaagtaAGACGAAAATATCGCAAACATAAACCGCCGAAAGTGCacaaatgtgaaatttgtgATAAGATATTCTCAAGAGCAACACACTTAAAACGACACGCATTAACACATTCGGAACATAAACCATTTGCATGTAATATATGTGAAAAGGGTTTTACACGACAAGATCATTTATCATTGCATATGCATAATCATAGTGAAATGAAACCGCATAAATGTGATCAATGTAATCGTGGTTTTATTCGAGGTGATCAATTGAGAAAGCATAAGGAAACACGTCATGGTGTTAAACCTCCAACGCAGAAAACTGAAATATGTGAAATATGTAAGAAAGCATTTACAACACCGAAATATTTACAAATCCATATGCGCACTCATACCGATCGAATATGGAATTGTAAATATTGTTCAGAGAAATTCGATTCGAAAAAAGAGTTACAGaatcatattaagaaacataCCAATGAGAAACCATATTTATGCTCGGAATGTGGTCTTAGATTTGTAAGGAATGATTATCTAGTTATACATATGAGAAGGCATAAAGGTGAAAAAccatataaatgtaaattttgtggTAAAGGTTTTCCACGTGCAACAGATTTGACAGTACACGAGAGATATCATACTGGAGAAAAAACACATCTTTGTACAATATGTGGTAAAGGATTTCAACGTGCCTATAATCTACTTGTTCACACGAGAGTACATACTGGAGAGAGACCATATCAATGTCCACATTGTTCGAAATGTTTTGCACAAGGTAATGATCTGAAAGCTCATGTTAGACGGCATACTGGTGAACGtttcaaatgtgaaatatgTGGAGATGGTTTTATTCAAGGATATCATTTAACTCAACATAAACGTGTTGTACATGGTATTGATATGAAATCTCATATACGTCGTGTGGAGAAATTCACAACACCAATTGAACAGCAACAGCAAATGCAAGCTATTAAAGAGGCTTcttcacaacaaaataaaaatgacagTAGTCCTACTGTCAATGTTgataagaaaaattcatttcaatcatCTGAAATGGAAGATATCAAAGtaataccagctacaataaaTGAACATAATAAGGATAAACTTCTACAATGCATCGATAGTGGAATGTATCAAAATAATAGTGTTCAAGATATATTTTCTCAGAAAGAAACTAAATTTAAGATAGAACCTCAGTTTGATTAG
- Protein Sequence
- MDNDTIKLEEMNEIDKLCRTCLCYDTNLKSLFNECDSDNNGISYAKMLAACSKYPVEENDDFPNNICNKCLKDIKFTYDFKLSCEKSYETLKSMIWHRSTETGFESLRNRQKPEARDDPDPDPDVAVVYLDGNLTVLSARRSSERDTEANDMHIKDDVIYIENVRDAFTCDICMKVYEDEEQFKMHIIDGHINGDSLNSECEIITPDEPTVVAYSCERCKTHFDNDADIENHTCNEIGDSIFLTVDVLKQSARQSKRNDDSYDHDQNDSDYMDVIRLSDQSNEESEDDDKSVSQNNNTKTDKITNGNKKTNKNQKVRRKYRKHKPPKVHKCEICDKIFSRATHLKRHALTHSEHKPFACNICEKGFTRQDHLSLHMHNHSEMKPHKCDQCNRGFIRGDQLRKHKETRHGVKPPTQKTEICEICKKAFTTPKYLQIHMRTHTDRIWNCKYCSEKFDSKKELQNHIKKHTNEKPYLCSECGLRFVRNDYLVIHMRRHKGEKPYKCKFCGKGFPRATDLTVHERYHTGEKTHLCTICGKGFQRAYNLLVHTRVHTGERPYQCPHCSKCFAQGNDLKAHVRRHTGERFKCEICGDGFIQGYHLTQHKRVVHGIDMKSHIRRVEKFTTPIEQQQQMQAIKEASSQQNKNDSSPTVNVDKKNSFQSSEMEDIKVIPATINEHNKDKLLQCIDSGMYQNNSVQDIFSQKETKFKIEPQFD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -