Ccae043350.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chrysops caecutiens
Gene Symbol
-
Assembly
GCA_963971475.1
Location
OZ020570.1:36780322-36787989[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 8.8e-05 0.021 16.6 0.1 3 23 131 151 130 151 0.97
2 14 5e-07 0.00012 23.6 1.2 1 23 157 179 157 179 0.99
3 14 3e-06 0.00072 21.2 2.6 1 23 185 207 185 207 0.98
4 14 4.9e-05 0.012 17.4 1.5 1 23 217 239 217 239 0.99
5 14 1.6e-06 0.00039 22.1 1.4 1 23 245 267 245 267 0.98
6 14 2.4e-06 0.00059 21.5 0.2 1 23 274 296 274 296 0.99
7 14 1.4e-05 0.0034 19.1 1.1 1 23 302 324 302 324 0.97
8 14 6.7e-05 0.016 17.0 0.7 1 23 331 353 331 353 0.99
9 14 4.7e-07 0.00012 23.7 1.4 1 23 359 381 359 381 0.98
10 14 9.2e-06 0.0023 19.7 0.5 1 23 388 410 388 410 0.99
11 14 2.9e-06 0.00072 21.2 2.2 1 23 416 438 416 438 0.98
12 14 0.00033 0.08 14.8 0.3 1 20 444 463 444 466 0.93
13 14 0.00013 0.031 16.1 0.7 2 23 473 494 472 494 0.97
14 14 2.3e-06 0.00057 21.5 1.5 1 23 500 523 500 523 0.97

Sequence Information

Coding Sequence
ATGTTCGAACAACAGATTAAAGCCGAACCAATGGCGTTTTATCCTTCATGCCCGCCACCGCCACAAATGGCTCAAGGGCTTCAACCTCGGCCGGAAAATTCAAATGCACAGCatccacaacaacaacaacagcaacaacaaaatgcacAACAACAGCATCAACAGCAATCGGTAATTGCAATGATCGACAATAAAAGTAACGTCATACAGCCTCAAATATTGATAGCGCAACAATCGACAACACCTCTTTCCACGGTACCCGATGGTCCTAAGCCAGATATTAGTCAGACCAATGCTCATGGGATACAAATTAATATCGGTGGTCAAACaccagcagcagcaacagccACAACAACTCCAACTGTGCATTCCAGAAGTAAGCCACAAGCATGTAAAATATGTGGAAAGATATTATCTTCCGCTAGTAGCTACTATGTTCATATGAAACTACATTCTGGTACGAAGCCATTTCAGTGTACAGTTTGTGATGCTGCATTCTGTCGCAAACCGTACCTGGAAGTCCATATGCGAACACACACAGGAGAAAGACCATTTCAATGCGATTTATGTTTAAAAAGATTCAGTCAAAAATCATCGTTAAACACTCATAAAAGAATTCATACAGGTTATTGGAGCATGCACAAACCGTTCCAGTGTACCCAGTGCAGTGCAGCATTTTGTCGGAAACCATATTTAGATATCCACATGAGAATACATACCGGTGAAAGGCCATTTGAATGCGATATATGTTTAAAGAGGTTCACACAAAAGTCTACGTTAAATATTCATAAACGTATTCATACTGTTCAAGAACGTCCATTTCAATGTGAACAGTGTCCGGCTGCATTTTCACGAAAACCTTATTTGGATATTCATATGCGTACCCATACCGGAGAGAGACCATTTGAATGTGATGTCTGTTTAAAGCGTTTTACACAGAAATCATCATTGAATATACATAAGACTATACATACCGTTGGCATTCGACCATTTCAATGCGCTCTATGTCCAGCTGCGTTCTGCAGGAAGCCATATCTAGATATTCATCAACGTACACATACAGGAGAGCGACCTTTCGAATGTGAAATCTGTTCGAAAAGGTTTTCACAGAGGTCCACATTAAATATACACAAAAGAATTCATACAGTGCAAGGACGACCGTTCCAGTGTGATCAATGTCCTGCTGCATTCTATCGGAAGACATACCTAGATATTCATATGCGGATGCACACTGGCGAGAAACCATTTCAGTGTGAAATGTGCTTAAAACGTTTTACGCAGAAATCAACATTAAACATTCACAAACGTATTCACACAGGTGAACGTCCTTACGCTTGTGACATATGCAATAAAACGTTTGCTGTGAAAAGCTATGTTACTGCCCACAGatGGTCTCACGTATCCGAAAAGCCATTAAGCTGTGATCGATGTGCAATGACATTTACGAGTAAAACTCAATTTGCAATTCATATAAGAACACATTCAGCAGGACAGAATTTTGAATGTAACGTTTGTGGGCGAACGTTTATCCGAGACAGTTATTTAATTAGACATCACAACCGTGTGCATCGAGAAAATAGAACAACAGCCAACAGTATTGCAACTATAAATAGTGTTGCTACAGGAGAAGCTGGTGGCACAAATGATACTCCTGAACCAGCTGACGTGTACGATTCAAGCAATTCACAAGTCTGTGATTTGAGATATGTATCAGATTTGCAAATCAATACTTCACCAGCAGTGTCACAAATGTCATCACCTGGTGTCGCAACAGACAATAGAAACATTCTAAACGACAGAACACAAACAATAACAATTAATGCGCAAGATGGTACACGGAGTACAATAAgtATTAACGATGCGAGCGGAATAACATTGAATGAAAGATTGATGCAGGAGAGAGCAGCTCATGAAAGAGTTGTACTGCAAAATCGTGCTATGCAAGAACAACGTGCAATACATGAACGTGTCAATCAAGAACGGGCTTTGCAAGAACGTGCATTACAAGATCGCGCCTTACAAGAACAACGTGCTTTACAAGAACGTGCAATGCAAGAACGTGCATTACAAGAGCGTGCACTACAAGAACGTGCTCTGCAGGAAAGAGCACTTCAAGAACGTGCTTTGCAAGAAAGAGCCATGCAAGAACGTAATCTACATGCACCACTTGTAATACAACAAGGTCATGTATTGAATCACGACAATAGATTAGATAAAACGGTTATGGTAGGTACGATTGCAAGTCCAGGACCTGTTTGA
Protein Sequence
MFEQQIKAEPMAFYPSCPPPPQMAQGLQPRPENSNAQHPQQQQQQQQNAQQQHQQQSVIAMIDNKSNVIQPQILIAQQSTTPLSTVPDGPKPDISQTNAHGIQINIGGQTPAAATATTTPTVHSRSKPQACKICGKILSSASSYYVHMKLHSGTKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFSQKSSLNTHKRIHTGYWSMHKPFQCTQCSAAFCRKPYLDIHMRIHTGERPFECDICLKRFTQKSTLNIHKRIHTVQERPFQCEQCPAAFSRKPYLDIHMRTHTGERPFECDVCLKRFTQKSSLNIHKTIHTVGIRPFQCALCPAAFCRKPYLDIHQRTHTGERPFECEICSKRFSQRSTLNIHKRIHTVQGRPFQCDQCPAAFYRKTYLDIHMRMHTGEKPFQCEMCLKRFTQKSTLNIHKRIHTGERPYACDICNKTFAVKSYVTAHRWSHVSEKPLSCDRCAMTFTSKTQFAIHIRTHSAGQNFECNVCGRTFIRDSYLIRHHNRVHRENRTTANSIATINSVATGEAGGTNDTPEPADVYDSSNSQVCDLRYVSDLQINTSPAVSQMSSPGVATDNRNILNDRTQTITINAQDGTRSTISINDASGITLNERLMQERAAHERVVLQNRAMQEQRAIHERVNQERALQERALQDRALQEQRALQERAMQERALQERALQERALQERALQERALQERAMQERNLHAPLVIQQGHVLNHDNRLDKTVMVGTIASPGPV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-